RNA id: XM_043216766.1


Basic Information

Item Value
RNA id XM_043216766.1
length 4780
RNA type mRNA
GC content 0.43
exon number 26
gene id slc12a3
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25371705 ~ 25381143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaattttttaagaTTCTTACATGagtagaaagttcaaaagaatagcttttatttacaatataattactttttgcCACAATGGAATTtgttactgtcacttttgctcAATTTAGTGCTTCCTTGCTGGATAATAAGTATGTATTTCTTCTGAAAAGATTAATTAAATCCATCTTTTGATGTTGTTACAATGATTTTATGTAATATGAAAAATTGGCTGTTTCCAACAGTGGACTCATTGTAATTTCAATTGAAACCACTTTATACAGTCTTCTACTTCTTGTTCTGACAGCTCCCCTCAGGCAGCATGAGGATTTCTAAATGACCATTTAGTAGCTGGTTTTCTGCTTAAGCTCTTGGTGTCTAATAATagaaatttaatcaaaaaatctGCTTCAAAGCAGAGCACCTGTGGGTACGTTTGTAGGATCTGCACTAATTACACCGAAAAGGCTCCACCTTTGGGGCTTCCAGACCAATTTCTGCAGAAATAATTACTTAACCCGATGCTGCTCCCTGGGTCACATGCATTGGCAGACATCGGCCTTTTAGTTAATGAGGAACAGTTTCTGCAATGATCAGTCAACGCTTAAGGCAAAGGGCTGTCTTCTGGAACGACTGTGTGCTGCTGGCAGGTTAAAGTGGCTAAAATGAAGGTCACTACGGGTTGGAAAATTCTCTGATCAAGAAAAATACACTGTCTCAGTCGATATCGTTGCTTGGCtacacttattttaaagtgccttGCTGCACTGTAATTATACATGTAAGCACTGAGtgacattaattaacatgaagtTACTATAGGGTTAGTTGCATGTTGcctaattatgcataatttactgttattattaaagtaagTACATGTGACAAAAACACTAGAAGAAAGTCAGAAAGTTTTCCCGATATTGTCATCTGTCCTGATTgctatcagaaaaaaaacaacactaccAAAATGTCAGaggtgaaaaacaaacaagactaaataaaaaaaaaaaaaaagtatggttTACTATGCATGTCTCAGGACTCTGAAAACCTGCAGTTGTCCTTGAGAACAAGTGTCAAGGATATCTGACCTGAGATCTGAGTCATTACATGTATAGATGATGTTTACAAGCCTCAGTACAAGCAAAAGGCCCTGCAGCAACAATTCGGAATTAATGACCGTTACAAAAGCTCCTGAATATGTTCTCACAATAATCATGCATCCATAAGTGGTTCCTTCCGGCCCAGGTACAATATAACCCTTCAAATCAAGCCCTCGCTTTACTCAGAGGGCTGTTGATTCAGTTGTGTTGGAGGGATGAACCTCACAACCGCCAGAAGCCCTTTCTCAGTCTCTTCAATGAGCAATGGAGATGACCGTAAATTCAGTTTGGGGGGATGTAGCAATTCCGATACTGACAGCGTAGCCTCCCGCAGCTCTGGAGTCTTTTCTGGATATGACACTTTGGATACTCCGCCGAGCTATGACTTCTATACCAACACTGAGGTCTTTGGGAGAGCAAAAAAGTCAAGACCTTCTCTCTTTCAGCTTCACTCCAACCCACAGGTGTTCTCTCAGGACGACCCTTCTCCACCTCCTCTCTATGAGGAGTCGAGTGTGGACAAACAGAGTCCGGATGAAGATGAACCAACAGAACCTCCTCCAGAACCGACCCGCTTTGGATGGGCTCAGGGAGTCatgATCCGCTGTATGCTGAATATCTGGGGTGTTATTTTGTACCTGAGGCTTCCCTGGATCACAGCTCAGGCAGGGATTGGAATGACCTGGATTATAATCTTGGTCTCCTCTTCTATTACTGGCATCACAGGCTTGTCCACATCAGCCATTGCCACTAATGGAAAGGTTAAAGGAGGTGGAACATATTTTCTGATCTCTCGTAGTTTGGGTCCAGAACTAGGAGGCTCGATTGGGCTTATATTTGCTTTTGCTAATGCGGTAGCTGTAGCTATGCACACTGTGGGTTTTGCTGAAACGGTACAGGTGCTCATGCAGGAGACTGAGGTTAGCATGGTAGACAAACTAAATGATATCCGTATCATTGGAGTGATTACTGTCACCTGTCTGCTGGCCATCTCAATGGCTGGAATGGAATGGGAGTCCAAGGCCCAGGTCTTGTTCTTCTTGGTCATCATGGTCTCCTTTGCCAGTTACATTGTGGGAACCATCATACCAGCCACTCCACAGAAGCAAGCCAAAGGATTTTTCAGCTACAGAGCTGATATTTTTGCGGCAAACTTTGTGCCCGGCTGGCGCGGACCGGAGGGGAGTTTCTTTGGCATGTTTTCCATCTTCTTCCCCTCGGCTACAGGCATCCTTGCGGGGGCTAATATCTCTGGAGATCTGAAGGATCCAAATGTTGCTATACCCCGTGGTACAATGTTGGCCATTTTTTGGACCACTATATCATATCTTATTATCTCAGCTACTATTGGCTCCTGTGTTTTGCGTGATGCTTCTGGTTATATAAATGATACCGTCTCGTCTTTGTCTGGGGAGTGTTTGGGAGTGGGCTGCAACTATGGCTGGAACTTCACAGAGTGTATAACCAACAAGACCTGCCCCTATGGACTCAGCAATTATTACCAGAGTATGAGCATGGTGTCAGCGTGTGGTCCTCTGATTACTGCTGGCATTTTTGGAGCAACTCTTTCCTCAGCCCTGGCCTGTTTGGTATCTGCTCCTAAAGTTTTCCAGTGCCTTTGCAAGGACAAGCTGTATCCAGGCATTGGGTTTTTCGGGAAGGGTTATGGGAAGAATAATGAACCACTGAGAAGCTATCTGCTAGCCTATGTCATCGCTATATGCTTCATTCTAATTGctGAGTTGAACACCATTGCTCCCATCAtctccaattttttcctctgcTCCTACGCCCTCATTAACTTCAGCTGCTTCCATGCCTCCATCACCAACTCACCAGGCTGGCGTCCAACTTTTCGATTTTATAGCAAGTGGTTGTCTTTGCTCGGAGCAGTAGTGTCTGTGATCATCATGTTTCTCCTAACCTGGTGGGCTGCTCTTATAGCCATCGGCATAGTCATCTTCCTGCTGGGATATGTGCTCTATAAGAAACCCGATGTCAACTGGGGTTCATCAATGCAAGCCAGCTCATATAACATGGCACTGTCTCAGTGTGTAGGTCTTAACCAAGTGGAAGACCATATTAAAAATTACAGGCCACAGTGTTTAGTCCTCAGTGGGCCTCCCTGTATGCGTCCTTCTCTAGTGGATTTCATCGGCACCTTCACCAAGAACCAAAGCCTAATGATATGCACAAATGTCATAACAGGTGGACCCTCACCTGACGCTGTGGAGTCGGCCAAAATCAGtactcatttaaaatggcttGACAAACGGCGCATAAAGTCCTTCTACCACACTGTAGTAGCTGATGACCTTCGTGTCGGCGTACAGATGTTGCTGCAGAGTACGGGTTTGGGTCGGATGAAGCCTAATGTCCTAGTCATGGGATTTAAGAAGAATTGGCGTAAAGCTCAACCAGGCGTCATTGAAAACTATATTGGAATTCTGCAcGATGCATTCGATCTGCAATATGGTCTATGTGTTCTTCGGATGAAGGAGGGTCTTGACATAAGTCGAACAATGCAAGCACATGTGAATTTAGGGTTTGAGACTTCTACCGAACAAGCACTTGACACAAGGACCTCAACTACTACTACATCACCCACAATTGACACATCACTGGACCCCGAGGAACTAATGGCCATATCCCAGCCAACCACTGTATTTCAGACTAGACAAGGAAAGAAGACCATTGATGTGTATTGGCTATCTGATGATGGAGGTCTGACGCTATTATTGCCTTACCTCCTGACCCGTAAAAAGCGCTGGGGCAGATGCAAAGTGAGGGTGTTTGTTGGAGGTGAAGCTCAACAGGTTGATGAGCAGAAACAAGAGCTCAAAGCTCTGATCAGCAGGTTCCGTCTGGGTTTCCAAGATATTCAAGTCCTTCCGGACATCAATGGAAAACCACAGTCTGAGCAcattaaaagaTTCGAAGACCTCATAGCTCCATACAGAGTAAGTTCAGTCCAAAAGGATGGTCAAGAAGCTGATGAGACCACAAAGGATTTCTCCTGGATGGTGTCTGATGAGGAGATTGAAACGTTCAGAGCTAAGTCCCTCCGACAAATACGCCTGAATGAAGTTATTCAAGATTACTCAAGAGATGCCGCACTGATCATTGTAACGATGCCTGTGGGGCGAAGAGGGGCATGTCCCAGTTCGCTTTACATGGCTTGGCTAGAGATTGTGTCACGTGACCTCCGACCTCCAGTTCTTCTTGTCCGAGGCAATCAGGAGAATGTGCTGACGATGTACTGCCAGTGAACACCACCTTTTACTGACATAACTGTTCACACACGCACTTCAGATGAAAAGAAACTCTTGTTAATGATATGTTCAAATTATGACagatttacattcatatttacattcatatcaATTTACTTTCATATTGTGTTTCATACTTGTTTTGATGTTAATAgggtgtttgttttaaatggtttaacctcagtatatattcaaaaacatacatttgtgCTGATTTAGATATTATGTACTTTCTCCAGAAGTAATGAACAAGTAATTCAAACAATTTCCTTTCAAAACTACAAATTAAGTAACAAGAATCTGTTTATCCTGATCTTAATTTAGTGATTGAACAATTTGCatatgtatagttttttttctttttaatggaaactctaatattactgaatatatttaataaattactacTTATGTATTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015377 cation molecular_function

KEGG:

id description
K14426 SLC12A3, TSC; solute carrier family 12 (sodium/chloride transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190833 lncRNA upstream 22667 25348756 ~ 25349038 (+) True G129262
TU190829 lncRNA upstream 24425 25346405 ~ 25347280 (+) False mt2
TU190813 lncRNA upstream 83168 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 229846 25063454 ~ 25141859 (+) True G129135
TU190635 lncRNA upstream 327885 25043088 ~ 25043820 (+) True G129134
TU190852 lncRNA downstream 58905 25440048 ~ 25442441 (+) True G129270
TU191004 lncRNA downstream 281354 25662497 ~ 25663585 (+) True G129360
TU191012 lncRNA downstream 293928 25675071 ~ 25675310 (+) True G129368
TU191014 lncRNA downstream 295414 25676557 ~ 25676861 (+) True G129370
TU191118 lncRNA downstream 585873 25967016 ~ 26221023 (+) True G129435
XM_043216548.1 mRNA upstream 238 25349481 ~ 25371467 (+) True nup93
XM_043216549.1 mRNA upstream 238 25356121 ~ 25371467 (+) False nup93
XM_043265145.1 mRNA upstream 24518 25346392 ~ 25347187 (+) False mt2
XM_043264601.1 mRNA upstream 37700 25322656 ~ 25334005 (+) True phaf1
XM_043264604.1 mRNA upstream 37700 25322656 ~ 25334005 (+) False phaf1
XM_043216547.1 mRNA downstream 565 25381708 ~ 25387860 (+) True herpud1
XM_043263913.1 mRNA downstream 7891 25389034 ~ 25394241 (+) True LOC122362468
XM_043264785.1 mRNA downstream 13739 25394882 ~ 25413257 (+) True nlrc5
XM_043264787.1 mRNA downstream 16974 25398117 ~ 25413257 (+) False nlrc5
XM_043264788.1 mRNA downstream 17223 25398366 ~ 25413257 (+) False nlrc5
TU190830 other upstream 23111 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 63640 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 63640 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 375755 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 783660 24583845 ~ 24588045 (+) False LOC122323037
unassigned_transcript_2193 other downstream 516280 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 540124 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 571255 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 847951 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 922744 26303887 ~ 26306806 (+) True G129468

Expression Profile