RNA id: XM_043216817.1


Basic Information

Item Value
RNA id XM_043216817.1
length 4686
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC122323149
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19945146 ~ 19954199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaagtTTCTCCCAGATGCAGAAGACATCAGCACTGATCAACATGTCTCTCACCTCTCTGCTCCTGGCCGAGCTTCTGCTGGTCACCACGGTAACAGCTTCACACTTCTATGGGGGCTCAATGACCTTCAACCCAAGAAGGAATAACGATGGATCTTACAAGGTTGAGCTTCGCTTCAAGACAACCTACCATTCCTGTTATGGATATGATTACTGGTCGTGCATCTCTGGAGACTGTGGAAATGATGTCAGTTCTGTGATTGGTCAAGTAGATTCAAGTCCAAATGGTGACAATTGGTGTCAGTCTGAGGGAGTGATAACAAAGATAGTTTCCACCAACAGCCCATTCCAGCTCctCAAAAGTGGttgctgctggatctacaacaCTGTCACAAATTCTGGAGACTGGAGTCTTCTCACTTACATTGACCTTGGTGTGAGATCAGACACCTCAGAGCCCAACCGATCACCAATAACAACCACCCTACCATTTGTCAGAGTTCCTCAAAACTGTCCCAGGAGGTACAATCTTTTAGCCTTTGATCCTGATGGTGACCATGTCACATGCAGATTTGGACTCAGACAAAACATGGAGTGTGGAATCTGCAACCAACCTGCTGGTTTTACATTGGATGAGCATAACTGCACTCTGTCATATTCACACACATTGGTCCTTGGAAGTTATTCATTCGAGCTGGTGCTGGAAGACTTCCCCACTCAAAAGATTACTCTGTCCTACACCAATCaacctttaaaagaaatatcTCCACGCATTGCCATCAGAAGCCGACGTTCTGTAACATCTATAGTATCTCAAATAACCATGACATCACCCACAACAACCACTACATCATGGACGACAACAACCACTACatcaccaacaacaacaactacatCTCCGacaacaacaactacaacaTCACCGACAACAACAACCACTACATCACCGACAACAACAACCACTACatcaccaacaacaacaactacatCACGGACAACAACAACTACTACATCACCGACAACAACAACCACTACATCACGGACAACAACAACCACTACatcaccaacaacaacaacaacatcaccCACAACAACCACTACAACACCTACAACAACCACTACTACATCACCGACAACAACTACTACATCACCAACATCAACAACTACTACATCACCGACAACAACAACCACTACATCACCGACAACAACAACCACTACatcaccaacaacaacaactacatCACGGACAACAACAACTACTACATCACCGACAACAACAACCACTACATCACGGACAACAACAACCACTACatcaccaacaacaacaacaacatcaccCACAACAACCACTACAACACCTACAACAACCACTACTACATCACCGACAACAACTACTACATCACCAACATCAACAACTACTACATCACCGACAACAACAACTACTACATCACCGACAACAACAACCACTACATCACCGACAACAACAACCACTACATCGCCGACAACAACTACTACATCACCGACAACAACAACTATTACATCACAGACAACAACAATCTCTACCTCACCGACAACAACTACATCAACGACAACAACCACTACATCACCAACAACAACCACAACTTCACCAACAACAACCACTACATCACCAACAACAATCACAACAACACCTACAACAACCActacatcaacaacaacaaccacaacaacacCTACAACAACCACTACATCACCAACAACTACAACATCACCAACAACAACCACTACATCACCGacaacaaccacaacaacacCTACATCAACCACTACATCACCAACAACTACAACATCACCAACAACAACCACTACATCACCAACAACAACCACATCATCACCAACAACAACCACTACATCACCAACAACTACAACATCACCAACAACAACCACTACATCACCAACAACAACCACAACTTCACCGACAACAACCACTACATCACcaacaacaaccacaacaacTCCTACAACAACCACATCAACGacaacaaccacaacaacacCTACAACAACCACTACatcattaacaacaacaacacttaCAACAGCCACTACAACACCTACAACAACCActacatcaacaacaacaaccacatCAACACCTACAACAACCACTACATcaacaacaaccacaacaacacCTACAACAACCActacatcaacaacaacaacctcaACAACTCCAACAACAACCATTACATCGCCTACAACAACCACTGCATCAGCTGCAACAACTTCACCACTGAGCACAATACCTCTTCAGTTCTCTCTGAAAGTTGATGGTCCGGCACCATCATGCACTGAGGGTGAATATCTACCACGGTTTCTTCACCCAACTCCTCATCATGGAGAACAACTTCAGGCTCGTGTAAATCAAGAGCTTGAGATCAGAGTGAAAGCTGTTGCATCTTTTTCTAGaaTCGTTGATGTCATCATTAGTGGACCTCTGAACAGCACAAAGTACAAAACCACCACTGAGGAATATGTGATTAACTGGACACCAACTGCAGAAAACTACGGCCAACATTTTCCATTTTGCTTTATCGCAGAAGGACAATATGGACTTGACATTTACCACTCTGAGATGAGGTGTGTTGTTGCAAAGGTTGATGCTAAAGGACCTGAGACGAGTGTAACCTGTACTGAAAACTCAATGTCGGTGACAATTAAGAGATCCTCCATCAAAAACCTCAGCGGTGACCACTTGAGACTGATAAATCCATCTTGTCTGGTTTACACCAACACTACCCACCTGTTCACCAACACACTTCTAAACGACTGTGGCACTCAGATTGAGGAGAACAATAATGAACTCATCTTCAAGAATAAAATCATTACATTCGATGATCCCAGAGACATTATAACCAGGAGGGATAACCTAGAAATTGAAATCCTGTGCAAATACCAGAAAAGGAGCAACGTTACGCTGGAGTTCGATACTCACAGACCGCCAATCATCATCTCAGAAAAAGGTTTTGGAACATTCAACTATCAGTTTGAGTTTTATGCTTCTGCAGATTTCCAGAACAGCAGGGGTCCAGAATCTTACCCGCTTGAGTATGATGTGGGCGATAAGATCTTCATGAAGATCGAGCCCGTCACTTCAGTCCTAAACACTGAGATCTTCCTCGAGACGTGTGTGGCTACACCTTACGATAATCCCAACTACCCCATCTCCTACCCCATCATCCAGAACGGatgcatTGTGGATGAAACAGTTCAGTTTTCTCCAGCCACCAACCATGTCCAGTTTGAAATGGAGGCCTTCAAATTCATTGGGTTCCATGACCAGGTGTTCATCAGCTGCTCAATCATCATCTGTCAGGTCAACAATCCCAACACCCGCTGCTCTCAGGGCTGCATCAACAGCACAGTCTCTCCACCGGCCCACCTCCATCGCAAAAGAGAGGCTCCCATCCAGACCGGCAGTCACTTCATCTCCCAGGGGCCCCTGCGGCTGAAGAGGAGCGCATCACAGGTCACCGCAAGCCCGGGTCTGAATCTGAACCTTGTTGTCGTCGCTGTTGGTCTTTTGGCAACAGTAGCCATGGTGTGTGGAGTGATCGTCTACAGAGCCCGAGCGCAAAGAATCAGATACCAACCTGTGCCATCGCACGACTTTTAGTCACGTCAGCTctgttgtttctttatttttcaaaacatgctATATTTTCCTTTATAAACAGAGAATTAGAATTGGTGTGCTTTGAAAGAGTTCTTATGTGAGTTGTTGGTCAAAGTGTGTCATAAAAGTGGAATATATCAGCAATCAAACTTTAGTTTGGGGACCGTACTATTAACTGTTAACTGTTAATTTGCTACATATTAGTAGTTGTTGAGTTTATTTAGGTAAGGTTAAGAGATCTAAAATATTGTCATTCAAAATATGGCATCAATATGTgctaataaatactaaaaacagccaatatgtttgttataagcaactagttaacagtGAAAATTGGTCCATATCTGATTAAACACCTTGAACAACTGTACCATTTATATAGTAGCAAATGTTTGATAATTAGCATCATTACTACAGTCtccagcgtcacatgatctgtcagaaatccttctaatatactgatttgcagctcaagaaacatttgtaattattttcaatactGAAAAgagttttgctgcttaaaatttGTGTGGAAACATTATACACTTTGTATTAGTGCCTTtgccaaataaaatatattaatttctcaaaaataaattactacaCCCAcattttttgattgattgattagaTAATTATGTTCCATAAAAGTGCAAGGGCAATGCATTAGTAAGAActgacatattaaatatatggaACATTTTACTTTACACTATGTGAATGGAGTTGATAAGTCGGTTTTGATTCCtgtgaattatataaaaatattaaactatcCATTTTAGTCATCAATTTACAACCAATTCAATTCAGTTATTTTGTGTAATTACTACAACCTGCACATAAGTCACTATGAGGTTTTTCTGATGCTTTTACAATTTTAGATGatgataaatacacattttatatttatcgCTGGTGTGTATTGGTATTTCTTTAAGGGGGAATATATGGAAACAGTGCcttgtttcttttaaacaacagtgtttactgcattttacattctgcattaaacattttgattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188470 lncRNA upstream 20344 19781765 ~ 19924802 (+) True G127637
TU188465 lncRNA upstream 318625 19626153 ~ 19626521 (+) True G127632
TU188463 lncRNA upstream 321864 19623013 ~ 19623282 (+) True G127630
TU188450 lncRNA upstream 368987 19575889 ~ 19576159 (+) True G127617
XR_006246958.1 lncRNA upstream 376661 19487570 ~ 19568485 (+) True LOC122323166
TU188509 lncRNA downstream 31542 19985741 ~ 19991636 (+) True G127663
TU188679 lncRNA downstream 248549 20202748 ~ 20211417 (+) True G127766
TU188681 lncRNA downstream 248549 20202748 ~ 20215231 (+) False G127766
XR_006253191.1 lncRNA downstream 267105 20221304 ~ 20224584 (+) True LOC122363139
TU188698 lncRNA downstream 302513 20256712 ~ 20281295 (+) True G127780
XM_043264324.1 mRNA upstream 4333 19938028 ~ 19940813 (+) True LOC122362767
XM_043216825.1 mRNA upstream 9387 19928226 ~ 19935759 (+) True LOC122323153
XM_043216839.1 mRNA upstream 36924 19903146 ~ 19908222 (+) True LOC122323160
XM_043216837.1 mRNA upstream 43668 19885134 ~ 19901478 (+) True serpini1
XM_043264321.1 mRNA upstream 319534 19624212 ~ 19625612 (+) True LOC122362762
XM_043216838.1 mRNA downstream 27262 19981461 ~ 19988814 (+) True zdhhc7
XM_043216832.1 mRNA downstream 40390 19994589 ~ 19999743 (+) True cog8
XM_043216820.1 mRNA downstream 48805 20003004 ~ 20015706 (+) True wdr59
XM_043216821.1 mRNA downstream 48805 20003004 ~ 20015706 (+) False wdr59
XM_043216822.1 mRNA downstream 48805 20003004 ~ 20013705 (+) False wdr59
TU188266 other upstream 1103611 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1162987 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 1383536 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 1383536 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1804893 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 48805 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 132496 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 593628 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 596949 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2446775 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile