RNA id: XM_043216824.1


Basic Information

Item Value
RNA id XM_043216824.1
length 3220
RNA type mRNA
GC content 0.50
exon number 9
gene id si:ch1073-390k14.1
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20101629 ~ 20118432 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCCCTCTAAAGTCACCGGAGACGCTGTTACGTACTCATCATGCCTCTTTTACTAAAGTTTATGTAGTTAATGTACGTAATAAATTCATCATTACATTCATCATTTCGTGAATTTGCTGGCTGAGAGAATGTCTACATGCAGAGATGTGAAGTCTGAGGTCCGTGAACTGCTGAAAGAGCTGATGTCGGGTCGCGAGGATCCGGATgggtttttctgtgtgtgtttgtcactgCTGGGGGACACCGACACCCGAACACACTTTCTGGACCTAATCAAACCTCTTTTAAGCGGACATGAACTCCTGCACAGTCAGCTGATTGCAACCTTCCTAGAGTACTTCTCTAAGGATGAAGCAGATGGATTAGAGTTGGCCTTAACACTCTCTGTTAATGAAACCGAACAAATCAAACCAGATCATCAGCCTCATGTGCCTCCCTGTTATAAAAGCTGCGCCGGCATGACTGCTGTAACTTCAGGTTTTGATCAGCCAAACCTCAATGCAGCAGAGAGCCAGGCTGCTGCGAAAAGGACGCTAGATAATGAAGTACATAAAACCGCATGCgccattaaaaacacaaatgaagacaatGACGATCTCAAGGTCACGAAGTCAACGAGGTCACAAAGACGTCGGCAGCGGAAGAAGCAGCATTTGTTGAAGAACCCATCGGGACCGCGACCGGTTCTGCTCTGGTTCAGAAGGGACCTCCGTATGTGGGACAAccctgctctgattggctccttTGAGCTTGGTGCGCCTGTCATTCCCGTCTTCCTGTGGAACGCGGCGGAGGAGGAGGGTCCAGGGGTCACTGTGGCCGCCGGCGGGGCGTCCAAATACTGGCTGCATCAGGCACTAGTGGGTCTGAGTCGCTCTCTGGAGCAGCGTGGAAGCCACTTGGTCACCTTGAAGGCAGAGGCCTCGTCTTTGACAGCGCTGCAAGGGTTGATCGCTGAGACGGGGGCAGGGTCGGTCGTGGCAACGGCCCTGTATGAGCCATGGCTGAAGGAAAGAGATGAGCGTGTGTGGGAAGCGCTGGAGAAACAAGGTGTCAAGTGCCGTGTCTATCACTCTTACTGCCTCAGAGACCCCTACACAGTCAGCACTCGGGGCGTTGGGCTGCGAGGCATCGGCTCTGTCTCTCACTTCATGAACTGTTGCCAGCAGAACCCCGGCAGTAGACTGACCGCCCCGCTGGACGCTCCCGTTGTCCTGCCTGCTCCCTCGACATGGCCGAAGGGATGCCCGCTTGCTGACCTGGGACTGGCACGCATGCCACGCAGGAAAGATGGCACAGAgATTGATTGGGCCGTGAACATTCGGAAATCGTGGGACTTCAGTGAGGAAGGAGCTCGTGCCCGTCTCGAGGCCTTCCTGCGAGATGGTGTGTACCATTATGAGAAGGAGTCGAGTCGTGCGGATGAGCCCAACACCAGCTCTCTATCTCCATATCTGCACTTTGGGCAGCTAAGTGCACGCAGCTTATTGTGGGACGCCCGTGGAGCTCGCTGCAGACCTCCCAAGTTCCAACGCAAACTGGCCTGGAGGGACCTGGCATACTGGCAGCTGTGCCTTTTCCCAGACCTTCCCTGGGAGTCCCTCAGGCCACCGTACAAGTCCCTGCGTTGGAGCTCAGACCCTGTCCATCTGAAGGCATGGCAGCGTGGAAGGACAGGATACCCGCTGGTAGATGCTGCCATGAGACAGCTGTGGCAGACTGGCTGGATGAACAATTACATGAGACACGTGGTGGCCTCCTTCCTCATCGCTTATCTACATATTCCCTGGCAGGAAGGATACCGCTGGTTTCAAGACACTCTGGTAGATGCTGATGTTGCTATAGATGCCATGATGTGGCAGAATGGAGGAATGTGTGGACTGGATCACTGGAACTTCGTGATGCACCCTGTTGATGCAGCGCTGACCTGTGACCCCTATGGCACTTTTGTGCGACAGTGGTGTCCTGAACTGAAAGCGCTTCCTAATGACCTCATCCATAAGCCCTGGAAGTGCCCAGCATCGATGTTGCGTAGAGCAGGTGTGGTTTTAGGCAGCAGCTACCCAGAACGGATCATTACTGACCTCGAGGAGCAACGTGCACAGTCTCTAAAGGATGTTGCATCTGTGAGAAGGCGTTTTAAGGAGTTTGTAGACCAGCGATCAGGCTGTGACATGGTACCTGTTCCTCCAAGGCTGGTGCAGGAAGCTCTGGGTAATTTGGAGGATGTTGTGAGTCACAAAGGAACCGGCTTTCTCCTCCCAGTCATCACCCGCATGGAGTTTAAACACCACTCAGAGGACCCAGGTAACCAAGATAACCCGTACAGCTCTGTGCTGAAGGGCTACATCAGCCGCAAACGGGACGAAACCATTGCCTTCCTAAACGAGCGAGACTTCACAGCCAGTGTGATTTTTGAGAGCGCACAGCGTAGAGAGAGGGTAGAGAAGGACCGGTGTCTTCTGGAGGGTCTGCCGAAACCCACAGACTTGTTCGGCCGGGCCAGACGTAAACCAACCAGAGACCCTTACAGCAAAGTGCCTGGAGGTGTCACTGTTCCCCACAGATAACAGGCTGACTCGTCCaagctggaatacactacacaGTTTTGCAGATTTATAACCAATTTGCAGGATGAGCCAACTCCGGTCAGTCAGTCTGCACATTTTCGGCTGTCAGAGTCGATTTCACCCATATTCATGTGGTGTGTTATTGGGACAGACTCAGATTTTTTAGCTTCAGACTTTGATCCAGTCTGAGGAAATCAAACGTATTTGACATTTTGAGACCTTAAACAACCCACTAGCAGCGTCTGAAACCACATACTAGTCTATAGGTAATACAGTTGGTTTGAAATTTACCACACAAGCTCTAAAAAAAGCATGTCGTATGTATAATATGGGGGGTATGAATCCACTaggttgttattgttttcatcttTAGATAGACTGTTATCATTgcttatgtgtttatataatgtatcaTTACTTATATAAGTTATCAGACTTTTTTAGCTGGGAGGTATGACAGTCGGAAATCTTATTCTTTTATTACATCTAGAGATCAGAATAACAGGATATTATTTTGACCTTTAAGCAGCTGTATTGCAAAGCAAGTACGGTCAGCTTTTCACGTCGACTAAAAAAAACGCAGCATGAGCAagttttttctctttgtacAAACACATCCATCATAGTGTtagaaatgtaacttttttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188509 lncRNA upstream 119602 19985741 ~ 19991636 (+) True G127663
TU188470 lncRNA upstream 186436 19781765 ~ 19924802 (+) True G127637
TU188465 lncRNA upstream 484717 19626153 ~ 19626521 (+) True G127632
TU188463 lncRNA upstream 487956 19623013 ~ 19623282 (+) True G127630
TU188450 lncRNA upstream 535079 19575889 ~ 19576159 (+) True G127617
TU188679 lncRNA downstream 84316 20202748 ~ 20211417 (+) True G127766
TU188681 lncRNA downstream 84316 20202748 ~ 20215231 (+) False G127766
XR_006253191.1 lncRNA downstream 102872 20221304 ~ 20224584 (+) True LOC122363139
TU188698 lncRNA downstream 138280 20256712 ~ 20281295 (+) True G127780
TU188708 lncRNA downstream 206898 20325330 ~ 20383758 (+) True G127785
XM_043216814.1 mRNA upstream 17637 20067678 ~ 20093601 (+) True zfhx3a
XM_043216819.1 mRNA upstream 55931 20017374 ~ 20055307 (+) True glg1b
XM_043216820.1 mRNA upstream 95532 20003004 ~ 20015706 (+) True wdr59
XM_043216815.1 mRNA downstream 3224 20121656 ~ 20154452 (+) True otogl
XM_043263956.1 mRNA downstream 37034 20155466 ~ 20160178 (+) True LOC122362491
XM_043263955.1 mRNA downstream 41689 20160121 ~ 20197815 (+) True ptprq
XM_043264419.1 mRNA downstream 111722 20230154 ~ 20238801 (+) True wash1
XM_043264422.1 mRNA downstream 131970 20250402 ~ 20256447 (+) False fkbp4
TU188630 other upstream 23657 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 97452 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1269703 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1329079 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1549628 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 429395 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 432716 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2282542 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2316374 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 3338668 23457100 ~ 23579802 (+) False cdh13

Expression Profile