RNA id: XM_043216832.1


Basic Information

Item Value
RNA id XM_043216832.1
length 2717
RNA type mRNA
GC content 0.48
exon number 5
gene id cog8
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19994589 ~ 19999743 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agttttttgcgGGTTCTCGAATCAGCACTTCGATCATGGCCGCCGTAGACGTGGAAGACGAGAGCATCCTGGCGTCGATCTTCAAAGACAGCTTTCCCGAGAACTGGAGAGAGAAGCCGGATTTCGCAGCGTATCTGTCGCAGCTGAGCTCCTGCGGCGTGGACGAGCTGAACCGGGAGCCGGAGCGTCTGGCCGAGGAGCGGGCGCAGATCCTGCAGCAGACCCGGGAGCTGGCCTTCACCAACTACAAGACGTTCATCAGGACCGCGGACTGCACACAGCACATCTACACCGACTTCAGCACGGTGGAGAACTGCCTCTCCAAACTACTGCACAAACTCCCCGGCTTCACTGAGAGATGCAGAGGTTTCATAAAGGAGGCAGAGGAGATCAGCGTCAGCAGGAGAATGAACAGCCTGACACTGAATCGTCACACTGAGATCTTGGAGATTCTGGAGATCCCTCAGCTGATGGACACGTGTGTGCGTAACGGATACTACGAGGAGGCGCTGGAGCTCGCCGCTTATGTGAAGAGACTGGAGAAAAAACATTCATCGCTTCCTGTCATTCAGGGAATTGTGCACGAGGTTCGACTGTCTGCTCAGCTCATGCTGAACCAACTCCTTCAACAACTGCGCAGTAACACACAGCTTCCGGTTTGCCTGCGCGTGATCGGATACCTGCGCAGAATGGATGTTTTCACCGAAGCCGAGCTGCGCGTCAAGTTCCTGCAGGCCCGCGGAAGCTGGCTGCGATCCATTCTCGCGGCCATCCCGGACGAAGACCCGTACTTCCACATCACCAAGACCATCGAAACCTGCCGCGTGCATCTCTTCGACATCATCACCCAGTACCGCGCCATATTCTCAGACGAGGACCCCTTGCTGCCTCTCGGGGGTCAGGCGCTGAACGAGAGCGCCATCTTTCACGGATGGGTGGTGCAGCAGGCGGCGCACTTCTTGGAGACCCTCGATCGGGACCTCCAGCGCGGGGTTGGAAGCCGTCTGGACTCTCTGCTGGGCCAGTGCATGTACTTCGGGCTTTCCTTTAGCCGGGTCGGGGCCGATTTCCGCGGACAGCTCGCTCCTATATTTCAGCAGGTTGCCATGGAGACGTTCCGGAAGGCCGTTCAGGAAGCAGTGGACAAGTTCCAAGAGGATATGAACTTGTACACGCTCATTTCTCTGCCGTCGATACTCGGAAGCGCTATTCCTCCGGCGGTCCCGAGCACCCAGCCGGGCACACTGCAGCCCCCCATGGCCCTGCTGGATTTCCCTCCTCTAGCCTGCTTCCTCAATAACGTCCTGACGGCCTTCAACGACTTACGGCTGTGCTGCCCGATCGGTCTCGCACAGGAAGTTAGCAGATCTGTTGAGGAAGCCCTTATTAAGGTGACCAAGCTGATCCTGGTTTTCCATCGAGCTGAGGAATCTGCCTTCAGCAGTCGTGAACGAGAGTTATTCGTTCAGTTCTGCAGCGCATTTGCTGAAGACATGGTGCCTTTCTTGAACCGATGTTTACAAGTTCTCTTTCCTCCAGCCCAGCTCGCGCTCATACTGGGCGTCCCGCCAACCCAGGTTTATAAATACGGCAGTCTCGGCTGCATCAACGTGAACTCGGTTCTGGAGCCGCTGGAGTTTGTTCTGCCACAGAAGGAGCCCGTGACCTCTGTCCTGGATCTCTGCACTGATCTGAGCAGCCTGACCACAGCTGAATCTGATCCTTCCGCCACATTCGAACCCTTAACGCCTCAAGAAAAACCTGTACTACCCGAACGAGAGCCTGTGTCAGCATCTGATCCTCGTCTGTCTCAAAAAGAGGACTTATCTTCTGAAGCAGTCAGCACTGAGCAAAACAACCCGATCCTTGAGCCTCAATTGAACTTTGATCTACAAAACTCGACAGGACCAGATGATTTGTCCACAACAGATAATAATGttgagatgaaataaaaaaacactacattCGGTGTATTTTAGGGGTcctaaaaatatgcaaaattttTCCAAGGcttgattgcatttttatttggtgAAGGTAATAGTGTAAATACGGTGTCATGAAATAtggtataatatatttaaaatgtgaaaaaaaaaaattcatacgCTCACTGTTTATGACAGAGGTCCCAAAAAGCATTTGGACACTTAAAATATCTGAATAcctttgcattaaataataaatgccacttattttatttaaaaagagatGCACTTTCAGACAAAACATTAGATGATACGATTAGaatgaagacaaaataaaaattctgtttaagaataatttttatttttgggtgaattgtttttttaagtttaacttaTGTGTTCTTAAACATTTATCTGTATGTTCTTGTAATTAGACAATGTATTGCAtttgttgtatgtttttcatttgctcattttttCCAGGGTGTTTCGGGTTGGGGaaaggtttaataaaaaaaaaaaaaaaaaacatcaactgaTGATTAGGCTGCTTGTTTCTGAAATTCCCCATAAAACCTGCATGGAATACCAGACTGCCTTTGCAAAGTTTGATTTTATCTAGATCACAAAATCAAGTTAAATGTCAgaaatttgcacaaaaataacatttccgTATCACAACTTGGTACAAGAGTAGAATATGGAAAATACTTTGCAATATACAGTTAAACTTGATGTCAAGGGAAAAATGAAGCAGATTATTCAATAAAATtatcataaacattttaa

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20295 COG8; conserved oligomeric Golgi complex subunit 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188509 lncRNA upstream 2953 19985741 ~ 19991636 (+) True G127663
TU188470 lncRNA upstream 69787 19781765 ~ 19924802 (+) True G127637
TU188465 lncRNA upstream 368068 19626153 ~ 19626521 (+) True G127632
TU188463 lncRNA upstream 371307 19623013 ~ 19623282 (+) True G127630
TU188450 lncRNA upstream 418430 19575889 ~ 19576159 (+) True G127617
TU188679 lncRNA downstream 203005 20202748 ~ 20211417 (+) True G127766
TU188681 lncRNA downstream 203005 20202748 ~ 20215231 (+) False G127766
XR_006253191.1 lncRNA downstream 221561 20221304 ~ 20224584 (+) True LOC122363139
TU188698 lncRNA downstream 256969 20256712 ~ 20281295 (+) True G127780
TU188708 lncRNA downstream 325587 20325330 ~ 20383758 (+) True G127785
XM_043216838.1 mRNA upstream 5775 19981461 ~ 19988814 (+) True zdhhc7
XM_043216817.1 mRNA upstream 40390 19945146 ~ 19954199 (+) True LOC122323149
XM_043264324.1 mRNA upstream 53776 19938028 ~ 19940813 (+) True LOC122362767
XM_043216825.1 mRNA upstream 58830 19928226 ~ 19935759 (+) True LOC122323153
XM_043216839.1 mRNA upstream 86367 19903146 ~ 19908222 (+) True LOC122323160
XM_043216820.1 mRNA downstream 3261 20003004 ~ 20015706 (+) True wdr59
XM_043216821.1 mRNA downstream 3261 20003004 ~ 20015706 (+) False wdr59
XM_043216822.1 mRNA downstream 3261 20003004 ~ 20013705 (+) False wdr59
XM_043216819.1 mRNA downstream 17631 20017374 ~ 20055307 (+) True glg1b
XM_043216814.1 mRNA downstream 67935 20067678 ~ 20093601 (+) True zfhx3a
TU188266 other upstream 1153054 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1212430 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 1432979 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 1432979 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1854336 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 3261 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 86952 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 548084 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 551405 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2401231 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile