RNA id: XM_043216873.1


Basic Information

Item Value
RNA id XM_043216873.1
length 4146
RNA type mRNA
GC content 0.51
exon number 21
gene id lrch3
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17457090 ~ 17482180 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCCTCGCCGGTGCTCCGTTGATCGGCGCGTCTCTGCCGTCCTCGCGCTGCGCATGCGCACTGCCACTGTCCGCGCTCGTGCGGGGCCCGTGACGATCCAGCGGGAGTGTTAGCTGTGTAATGGCGGCTTCGGTGTTGCTCTCCGCGGAAAGCGCCGTGCCCTCGTTTACCGTCGGCCACCCCGCCGGAGCCCCGGCGGCGGGAGCCGCTCATCACGGATTATCCAGTGCTCCCGGAGCCGCGTCCTGGAGCCGCTCGCTGGACCGGGCGCTGGACGAGGCGGCGGCCACCGGAGCGCTCGCCCTCAGCGGCAGGAAGCTGAAGGAGTTCCCGCGGAGCGCCGCCGGACACGACCTGACCGACACCACGCGCGCCGATCTATCACGAAACCGACTGACGGAGCTGCCGGTGGAGGTCTGCATGTTTGTGTCGCTGGAGAGTTTGAACCTGTACCAGAACTGCCTGCGTTCGCTTCCAGAGAGTCTGATCAACCTGCAGTCGCTCACCTACCTGAACATCAGTCGGAACCAGCTGTCGACTCTCCCCGCTCATCTGTGCCGCCTGCCGCTCAAAGTCCTCATCGCCTGCAATAACAAGCTGGTATCGCTGCCGGAGGACCTGGGCAAACTCAGACAGCTCACCGAGCTGGACGTCAGCTGCAATGAGATCCAGACGCTTCCTCCACAGATCGGTCAGCTGGAAGCCCTGCGCGACCTCAACATCCGCAGAAACCACCTCGTTCGGCTGCCTCCGGAGTTGGCCGAGCTGCCGTTGGTCCGGCTCGATTTCTCCTGTAATAAGGTCACGACAATCCCGGTATGCTACCGCAATCTCAGACACCTCCAGAGCATCATTCTGGACAACAACCCTCTCCAGAGCCCGCCTGCACAGATTTGTATAAAGGGAAAGatccatatatttaaatatctgaacATGGAGGCATGTAAAGCAGCGTCAGACCTTCCAGACTACGACAGAAGACCGCTGCCTTTCGgatcctgTGCGGAGGATCTGTATTCTGGCCGGCCGTACGGAGCTCTGGACTCCGGCTTTAACAGTGTGGACAGCGGAGACAAGAGGTGGTCCGGAAATGAGCCTTCAGACGAGTTGTCGGACCTGCCTTTAAGAGTTGCGGAAATCACCAGGGAGCAAAGACAGCGACGGGACCGAGAAAGAGAACGCGAGGATCACCGGACAGGGTCCCACATAACCAACGGCACATTGGAAGCGGAGCTTGAGCAAATAGACTTCATCGACAGCTGCGCGGCGGATGATGACGACGAAGATGGGCGGAGCCGGAGAGGGGCGGAGCCTGTCAGCCTCAGCTCGCAGTTTATGGCCTACATCGAAAGACGGATCACCAGAGAGGGTTCGCCGGTGAAGACCAGCCCATCCCGAGACTTAAGAACCGATGATCCAAGACGCCAAACCTCCTTACGTGGTGGGACAGAGACAGCATCTTCATACGCTCACAATCAGcgctCCGGTTCTGGTGGCGGCGTGGAGAGAATGAGACGGGAAGCTCAGCTGGCGGCGCTGCGGTACGAGGAGGAGAGACAGAAAACCAGATCCGTGCAAAGAGACGCCGTCATGAACTTCGTCAAGCACAAGTCGTCTCAGAGCCCCACGAAGCTCAGTCCGACGGACAGCGAGAGTGAGTTTGAGCCCCTACTGATATTTGAGATAGACACAGATACCAACACTATAAAGAAGAGGCCAGACCCTCACAAACAGTCTCTCTCTGCTGTGCCGCTGGATGGCTGTGTGTCTCCCTCTTTATCCGTCGCCTCCTCCTGTTCACCGCAGCAAGGTGAAGACTATGGCTCGCTGTCACCCACCGCCCTGCAGTCTCCGTCGTACCCCAGCCCAGGGGCCCCGTCCCCGACCCGCGGCCCCAGCCAGAGACCCGAGAGTTACCTGTTCCGCCTCAGTCAgcgagaagagaagaaaaaagGAGATTCAGGCACACAGAAGGCGGAGCCAGTTGAAACCACTCCCACACAGAGCCCCGCCCCCACAGGAGAGGAGGCAATGCTGATAGAGCAGCTGAGAAGGAATATCGAGTGCCGCCTCAAGGTGTCTTTACCCAGTGATCTCGGGGCAGCTCTGACTGACGGGGTCGTGTTGTGTCACCTGGCCAACCACGTGCGTCCCCGATCCATCCCGAGCATCCATGTTCCCTCACCGGCGGTGCCCAAACTAACGATGGCCAAGTGCCGGCGAAATGTGGAGAACTTCCTAGAGGCCTGCCGAAGAATTGGAGTTCCTCAGAACCAGCTGTGTCTCCCCCTGCACATCCTGGAAGAGCGAGGTCTGCCTCAGGTGGCCGGGACGGTCCGAGCCCTCCTGGACCTGGCTCCTCCGAAACACACGCCGTCCCCGAGCTCGACCCCGACGGGCCCCAGCACCGCCTCGCCCCTCGCTCTGTAGGAACCTCCTCCAAGCAGCCTCCGAGATCTttaagactcttttttttttttgttcttgagtGCCTCATGAACGGTTCTGTGACggtaacacactcacacactacctgctcagtgcacacacacacacactcacacacgcacacgctcacacactcgTACACACTcgtgcacacacgcacacacacacgcacacacacacacacacacactcactccgaACCCCAGCCAGAGGAGAGACGACTGACCCGCAGACATGTCCAGAGACTTCGATTTTGTTTTAACAGTTAGTTTTACACTTTAATATCTCTAACTATTATGGGTggtgtttatttctattttgtattgttgttgttattgttgttgttgttattattattgactcTCAAATGATGTGGAAATGAGAGTTGGCCAAAACTACCCAAGCTTACGTCGGCTGGCGGTTTAATCTCACCAAACCTGCAGCTCACATTTCACCccgaaataaaaataagatagatatatatatttgtgggaCGTTTAGAATTATGTGCCTTTTTTTTGTGGCGTACAAAACTATTTCTCATTATCacattgcaaaaatgtaattgtatttatttcctgtttttctcCCCTTTGCATcgtaatgcatttaaaatattttgaaacggGTCgttgaattttttattaatagaatttttaaaaccattaggatttttgtgatgtacaaaataaatctgCCAAAattgtttacaattttacaaaaatgccaATTTTTCTTAGCATTAtgaatgcagttaaataaattaaaacggATGGTTTAATTGCAACGTAAAGCTAAAAAGAGCATCGAAACgcattttttaggtttttgtggCAATTTCCGCGACATGCAAATCAAATTCTCATCACCACGAAGCAAAAATAcgattattatttaaattgaaaggtaatataaagaataaaatcttgaagaaaaacaaagaaagtagCAGTAAGCttcatgcagtgtttttcttttttatttgggGTGAAGCGTGTGATGTTTTGGTGAGACTGGAGCGTGAGCGTTTAAGTAGCTAGCAGCAAGTAACTGACTGAAAGACACTACTTCCCAGCGGTCCTGAGTCCAGTGTGTATCCACAGGGTTttcttcatgtttgtttgtttcggTGCTGCTTTTAATCGCACGAGAAGACTATTAAAACTTTTAAGAGCTCACAGACTTTATTGACCTTGTAAAATTGAGAGGTATATTAGTGCTATAGCGAGTTTTAACAGGACGggcacaattttattattattgtttttttaaaacggaTGTATGTAAAGATGTTTGAAACGCAGTAAAAGAATGAAACACTCTTATTTGGTAGACTCGGTCGCGCCGGGGGCTGATTTCTGTCGTGTGGTTGTATCCGGTCTTGCATGCGAGGGGTTCTGGGTGTCGGGAGTTTGGACTGAAACGGGACGGCGgtataaaagctgtttttgttttatttccttgtTATTCAGATTGTTACGGCTTTGCTTGCGATCGTCTTCGTTACTTCCGCTCGGGTCTGCCGTGTCGTGCCGGACTTCCTGGAGCGAGTCTTGAGCTCCCAGCAGCGCTGGTTTCCAGGGAAGCTCACAAACACGCTTAAGAGCGTGGCCAGGTCCATTTCacggcaaaataaaaaaaaacaacaacatttattcttttttcatgacagttaagcacatttttactgcaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187716 lncRNA upstream 1446 17454183 ~ 17455646 (+) False serp1
TU187713 lncRNA upstream 7291 17449471 ~ 17449801 (+) True G127110
TU187705 lncRNA upstream 11028 17444961 ~ 17446064 (+) True G127103
TU187699 lncRNA upstream 45499 17410866 ~ 17411593 (+) False G127098
XR_006246930.1 lncRNA downstream 33479 17515659 ~ 17520724 (+) True LOC122322999
TU187720 lncRNA downstream 33626 17515806 ~ 17519391 (+) False LOC122322999
XR_006246945.1 lncRNA downstream 39444 17521624 ~ 17527930 (+) True LOC122323095
TU187819 lncRNA downstream 213154 17695334 ~ 17695593 (+) True G127195
TU187831 lncRNA downstream 267211 17749391 ~ 17750176 (+) True G127207
XM_043216880.1 mRNA upstream 1435 17454154 ~ 17455657 (+) True serp1
XM_043216533.1 mRNA upstream 17027 17437151 ~ 17440065 (+) True LOC122322924
XM_043216683.1 mRNA upstream 31115 17425154 ~ 17425977 (+) True ompa
XM_043264317.1 mRNA upstream 102244 17325966 ~ 17354848 (+) True unc13c
XM_043216503.1 mRNA upstream 151047 17303769 ~ 17306045 (+) True LOC122322904
XM_043264179.1 mRNA downstream 16349 17498529 ~ 17500517 (+) True LOC122362636
XM_043264911.1 mRNA downstream 73030 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA downstream 73031 17555211 ~ 17693234 (+) False LOC122363047
XM_043216686.1 mRNA downstream 287478 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA downstream 287591 17769771 ~ 17776977 (+) False pigb
TU187698 other upstream 45499 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 147934 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 151118 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 292335 17129922 ~ 17164757 (+) False LOC122362575
TU187881 other downstream 326494 17808674 ~ 17812167 (+) False G127239
XR_006253166.1 other downstream 401485 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 440748 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 443920 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 656355 18138535 ~ 18140253 (+) True G127292

Expression Profile