RNA id: XM_043216913.1


Basic Information

Item Value
RNA id XM_043216913.1
length 4446
RNA type mRNA
GC content 0.45
exon number 3
gene id slitrk3a
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19380035 ~ 19388663 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTGATACtaaccagccaatcagaaaaggCCTCTAGGTGGGGCTTTATGTTGCATGCGTCAGTGCATTGTGAAAGcCAAGCATCGGAGGCAACCTGGGACCACCCGTCTCCAAACCCTGGAGATGTAAAGTTGGACACCACTAAAACCGATGCTGTGAAGTGGCTCTCAGCCTTAACTTCATCAGGACTCGGCGGAAGGATGCTGTGGTTTACCCTGCTAAGCACAATAGCTTTAGGATGGACTACGCCGATCCCTCTGTTGGACGAGTCGGAAGAAATAGATGAGCCTTGCTTTGACCCTTGCTACTGTGAAGTCAAGGAGGGCATTTTCCACGTCCACTGCGACAGCAAAGGATTTACAAATGTCAGCCAGATCTCCCAGACGTGGACGAGACCCTTTAAACTCAATCTGGCAAAGAACTCCATGCGCAAGCTGTATTTTAACAGCTTTTTGCACCTTAACAATGCTGTGTCACTCAATCTGGGGAATAATGCGCTACAGGACATACATGTGGGCGCTTTCAATGGCCTGAGCATCTTGAAAAAGCTGTTTCTGCATGAAAACAAACTGGAGGTGTTCAGGaatgacacttttatggggcTGGAGAGCCTCGAGTATCTTCAGGCGGATTACAACGTCATCAAGAGAATAGAGAGCGGGGCGTTTCGGAATCTGCACAAACTCAGAGTACTTATTTTGAACGACAATTTGATACCCGTGCTACCCAATTTATTATTCAGGTCCGTATCTCTCACGCACCTTGACTTACGTGGCAACCGCTTAAGAATTCTACCCTATAAAGGGACGTTGGAATACATCGGTCGCAGCTTGATGGAGATCCAGCTAGAGGAAAATCCATGgaactgtgtgtgtgacattGTGCAGCTCAAAACCTGGCTGGAGCGCATCCCCTACACGGCACTGGTGGGCGACATAACGTGTGAATACCCTTTTCATTTACACGGTAAGGACCTCCGTGAGATCAAGAGAAGCGAACTTTGTCCATTGCTCTCTGAAGCAGAACTGGAGGCCAAACACGGCATTCCCAGATTACCGTTTAATAACGAAAATGTCTGGCCCACCAAGCCTTCGTCTATGTTGTCATCTTTTCATAACACAGCCTCCTCGGTAGAGTACAGAGAGAGACACGTAAAGCCGACTAAGCGGCCGAGACCCACAAAAACACCACCCACTCCTCGTAGCATTTACCCAGGGCTGAATCAGCCTCCAATGGCTGCCTACCAGACCAGACCCCCTATACCAATCATTTGCCCGACAGGGTGCATGTGCAATTTACACATCAATGACTTGGGCCTCACTGTCAATTGTAAAGAGAAAGGTTTCCACAACATTTCTGAGCTGCTGCCGCGACCACTCAACGCCAAGAAACTCTATCTAAGTGGGAATTTGATTCAGAAAATTTACAGGTCGGATTTTTGGAACTTCTCCAGCTTGGATTTACTGCACTTGGGTAACAATCGGATATCGTATGTTCAAGAAGGCGCCTTTATGAACCTACCTAATTTGAAAAGCTTATACTTGAATGGCAACGACATCGAAAGGCTCACTCCAGGCATGTTTCGCGGTCTGCAGGCGCTCAGTTACCTCTATTTCGAGTACAACGTCATTCGAGAGATCCAACCGGCCGCCTTCAGCCTAATGCCAAACCTGCAGTTGGTTTTTCTCAATGACAACCTGCTGCGCACCCTGCCCTTGGATGCTTTTGCCGGCACCTCCCTGGCTAGACTCAACCTGCGCAACAACTACTTTCTGTACCTTCCCGTGAGCGGAGTCCTGGAGCATCTCCACTCCATCGTTCAAATTGACCTTCACCAGAATCCGTGGGACTGCTCCTGCGACATCATCCCGCTCAAGCAGTGGATCGAGAAGCTCAGCTCCGTCATTGTTGTGGGGGAAGTGACCTGCAAGACCCCGGACTTCGCTCTTGGCAAGGATCTGCGCACCCTGGAGGCTGAGGTCATCTGCCCCGAGTTGAAATTCACCTCTTCTTCTCCGGTCCTGCCTAATGACATGACGGCCACCAGCGGCTCTGAGTTAGGACAAGCGCCAGCGACGGGAGCCGTGCCGCTCTCCGTGCTGATTCTCAGCCTGCTGATTCTCTTCATCTCGTCTGTGTTTGTGGCCGCCGGTCTCTTCGCCTTCGTCCTGCGGAGGCGAAAAAAACTTCCCTTCAGGAAGCGTCAGGAGGTGGACCTCACGGGCATTCAAATGCAGTGCAAGATCTTTGAAGAGAGGCAGACCGCCTCGCCCGAGAAGCCACCCGGTCACGTCTACGACTACATCCCCCACCCCGTAACTCAAATGTGCAACAATCCAATTTACAAACCACGGGAAGGCGAGATCGAGGGCGAGCAGTTCGCAGAAACCAAGgaaaataacagtaattatCGAACTCTTctggagaaagagaaggaatgGACGATGGCTGTGTCCAGTTCCCAGCTCAACACCATTGTCACCATCAATCAGTCAGGTGACATGGCAAGCTTTCACGAGAACGGAGTGCTTTGCCCTACCGTGATTGACAGCCAGAGACCGACCCCAACGGTGGGTTTTGTAGACTGCCTGTACGGCACCGTTCCCAAATTAAAGGACATGCACGTTGCACACGCACATCCCCCCGGAATGCAATACCCTGATTTACAGCAAGACGCCagattaaaagaaacattacttTTCACTGCGGGGAAAGGATTCCCTGAACAAACCCAAAGTGAATACCTCGAGTTAAGGGCAAAACTCCAAACCAAGCCGGATTACCTCGAAGTCTTGGAGAAATCGTATAGATTCTAATTGAattggaaacaaacaaacaaaaaaagagtaaaCTCACTTACACAAACTCTCCCCTCTCCACGCCCCAGAAAAGAATACCTATCAAAAAAGAAGCATGGCAAAATTATATGTTTCACACACGTACAcgtacacactctcacacacatttcCCCCAAGTCGCTTTTGGAGGAAAGGCCATACTCAGATTTTTCAATGAAGTGCCTTTTTTTCAGAGTAGCCAGCAATGTTACCACCCATTATTTTTGTACGGAACAGATTTGTTGTTGAACCTCCGGAGCGCCTGGCACACTTTGTAGAGTATTTGCAGTTTGCTGCATGCATTCGACTGCAGAAGGAGGTTACTGAGCAAAAACTTCACCTGCTATAGAGATACAGCGACGTATTACCCGTTGAGTGGtctatttaattttctattcCGCAAAAGACAGAGTTCTATCTCAAGGACGCACCTGAGGATCaatatttgtgaatatataatGACACTTCAAGATTTTATGGAGTTCAACGCACTTTCTTAAGAAAAATGCTTCTGGATACTATCACTAACAGCTTTTTAGGAAgcacttttaatgttttctctctctctctcacaaagATTTGACaaagttaaaaatgtgcatatatttattctgtaatttCAGTGAAAGATTTAATTGTAAAGGTAATGTTAAATCAATGTATAGTGATTATGCGTCTGGTATAGCcttcttaataaaaatacaaagtcttaaatcaaataaaaaagggTACCAATGCATACTGTTTGTGAGAAATAGACTTGACGTATTGGTATGGCGCttcaaatgataaaattataaaatgcacattaaccTATCAAGGTCTCGCTGCTGCTAGGAGAGTCAGGTTGAGACAGTCTGGTGTTCCCGCCTGTATGCATGTGTCATCGATGGGGTTGGACAAGAAAAGGAGACCTTGGTTTAGATTTGAGTCTTTCTGTGAGGTATGTTGTTATACCTGTCCACCGCTTACTAAATTACACAACATTTGagatgaatatttaatgcaatgtcACTTATACATGTGTCCAcaagagggagaaagagagacacactGGCATCATATCTGTGGATGGACAAAATTGATGTTTTACTAGTTGAGGGAAAACGCCACTTATTTGTTCAGGTACGACATACAACTTGCAATTTGTGCAATTCGAATATAAATTCTGCTTGTgttgtgcgtgcgtgtgtgtcgGGGGGTCATTTTAATGTCGATGCATTACTCGAGTGACACAATTACGTAATAGAAAGTGATCTGTCCAACAAATACCGATTTTCTACTCCCCTTTGACAACGAAGTGGctattttttaaaccaaatattttATGTCTGTTTGCCTTTGCCAGTTCTATCCATAACCACTTACGACAAACAGCCAAATGCAGCCCATCTATTATAAAGTATAATTATTTCTCCTGAGGTTGTCAAGGATGCAGAACggtctttctttatttgttccTAATCATTCAGCTGACTAGCGTAGCTTCTGATTCCTCTGTTCAATACCCACCAagaatttcatttatattttttccctACATTCATCATTTCCCCAGCCTGTTTTgtcaatatttcaataaattttGCTTGGTCTATATTTAACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253152.1 lncRNA upstream 31556 19330322 ~ 19348479 (+) True LOC122362700
TU188406 lncRNA upstream 91489 19269663 ~ 19288546 (+) False LOC122323181
TU188269 lncRNA upstream 598331 18730690 ~ 18781704 (+) False G127500
TU188255 lncRNA upstream 686804 18690565 ~ 18693231 (+) True G127492
TU188242 lncRNA upstream 733199 18646556 ~ 18646836 (+) False LOC122323076
XR_006246957.1 lncRNA downstream 63867 19452530 ~ 19480221 (+) True LOC122323165
XR_006246958.1 lncRNA downstream 98907 19487570 ~ 19568485 (+) True LOC122323166
TU188450 lncRNA downstream 187226 19575889 ~ 19576159 (+) True G127617
TU188463 lncRNA downstream 234350 19623013 ~ 19623282 (+) True G127630
TU188465 lncRNA downstream 237490 19626153 ~ 19626521 (+) True G127632
XM_043216868.1 mRNA upstream 91479 19269611 ~ 19288556 (+) True LOC122323181
XM_043216867.1 mRNA upstream 91479 19275350 ~ 19288556 (+) False LOC122323181
XM_043216730.1 mRNA upstream 721295 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA upstream 721295 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA upstream 721295 18654621 ~ 18658740 (+) False LOC122323077
XM_043216816.1 mRNA downstream 15658 19404321 ~ 19451211 (+) True LOC122323148
XM_043264320.1 mRNA downstream 211349 19600012 ~ 19603818 (+) True LOC122362761
XM_043264321.1 mRNA downstream 235549 19624212 ~ 19625612 (+) True LOC122362762
XM_043216837.1 mRNA downstream 496471 19885134 ~ 19901478 (+) True serpini1
XM_043216839.1 mRNA downstream 514483 19903146 ~ 19908222 (+) True LOC122323160
TU188266 other upstream 538500 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 597876 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 818425 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 818425 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1239782 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 614341 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 698032 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1159164 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 1162485 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 3012311 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile