RNA id: XM_043263896.1


Basic Information

Item Value
RNA id XM_043263896.1
length 5211
RNA type mRNA
GC content 0.45
exon number 18
gene id fgd4a
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22849926 ~ 22889500 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaggaaggatgCAGAGTGTGTGGCAGCACTGCTAGAGAGGGAGGGTTCATGAGAGGGCTGTTCAGTCTGGCGTGATTCTCTGGATGAGGACGAcggaactgaactgaactgaagtggaaatctcacacacacacacacacacactcatctgcCGTCTCCAAGCCGACGAAGACTCAGATAAAGCTGGCAACCCCAGCTGCTTTTCCTCCAAACAGTCTGAGGAAGAGGAGCCTTGTGTTGGAGTGAAGATTGCTCAGAACAAAGCCGTTGGAATCCACAGTCCTAACGATCAAGGTCATCACAATGAGAAGTTGAGTCGTGGGTGTAGATTCAGCAATAAGAGCCTTACTGGAGTAAATGGAAGAGTTTCAGGCCGACGGCCACCACTGCATCCCAAACCTCAAGTGCCTCCTAAGCCAGCACACCTTCAGAGTCCGGTGACGGACATCTCCTTACCTCTGGCTGCTGGAACGTCACCCATCAGTCACAACATGGAGGGAGGAGGAGTAGGAGGAGGAATAGGGAAGGGCCTAGTGTCCAACCTCATCAGTCGCTTTGAGGAGAACAGTCACACAGACATTCGGAGGGAGGGCGCTCCTCTGAAGCAGGTCAGCAGATCTCCTAACTGCAGCCCGGCTCACAAAAACTACCAGAGACAGACGGAGAAGCCCACAGAGCCCGGCTCTCCTGTGAACAGCCCACGCCATGCTCTCAAACCCCCCAATGGGTTTCTAACCCAAAAGAAGAGAGAGCAGGACATGAATCAGGACATGGACGGAATTACGCACGACACAGTTCCAGCAATGAGGACCGACAGCAAGGGACTGCTGAACGGAGATGCCGGCGATGTAGCTAAGAGGGAAATTATAGACCAGGACTGTGTGGATCCACCTCACGCTCATATAGAACGGACCGAAGATGTGGAGAGGAACGCGCCGGAGCAGAGTGACGTTGTGATGAACAGCATCCCAGAGCAGAAGGAAACTAATGAGCAGAAGCTCTATAAGATAGCAAATGAACTTCTGCAGACAGAGAAGGCTTATGTTGCGCGACTCAACTTATTAGATAAGGTGTTTTATGCCAAGCTGTTAGAAGAAGCAAGAAAAGAAACGTTCCCCATGGATGTGGTGAAAAACATCTTCTCCAACATCTCTTCCATTAATACCTTCCACAGCCAGTTCCTCCTGCCTGACCTGGAAAAACGCATGGGAGAATGGACGTCGACACCTCGCATTGGGGACATCCTACAGAAGCTCACCCCCTTTCTGAAGATGTACGCTGAATATGTGAGGAACTTTGATCACGCCATGGATCTGCTGAAGCAATGGACGGACCGATCGCCTCCGTTTAAAGCCATCATTGTGGAAATCCAGAGTCAAGACGTGTGCGGAAGCCTGACGCTGCAGCACCACATGTTGGAGCCGGTTCAGAGAGTGCCGCGATACGAGATGCTGCTTAAAGACTATCTGAAGAAACTTCCTCAGGATCACATAGACCGGCGGGATGCTGAAAAGTCTTTAGAGATCATTGCCATGGCTGCCACTCATTCCAACACTGCCATTAGAAAAACAGAAAACCTAAAGAAATTGCTGGAGATTTACGAGATGCTGGGGGAGGAAGAGGACATTGTGAACCCTTCAAACGAGTTAATAAAAGAGGGTCATATTCTGAAGCTGGCCGCTAGAAACACTTCAGCCATGGACAGATATCTCTTCCTATTCAACAACATGCTGCTGTACTGCGTTCCAAAGTTCAGCTTGGTGGGACAGAAGTTTACGGTTCGCACACGTATCGGCATCGACGGCATGAATGTGACGGAGACGTACAACGATGATTATCCTCACACCTTTCAGGTTTCAGGGAAGGAACGGACACTGGAGCTGCAGGCCAGCTCTGAACAGGATAAAGTAAGCTGGATtaaggCATTCCAGGAAACGATAAACGTCTATCTCCAGAAAAACGAGACCTTTAAGTCAGCGTTCAAAGATGTGGAGGAAGTACCAGATCTAAAGATATCAGAACTAGGTAAAAGAGCTCCTCGCTGGATCCGAGACAATGAAGTGACCATGTGCATGAGGTGCAAAGAGGCCTTTAATGCCTTAACACGCAGGAGACATCACTGCCGGGCCTGTGGATACGTGGTCTGCGGGAAGTGCTCAGACTACAAAGCCCCTCTGGAATATGACGGGAACAGGATGAACAAGGTGTGCAAAGACTGTAACTCTATCCTGACAGGCCATACAGAcagtgaagagagagagggcaagAAGAAGGGCATTCTAGAGATCGAAGCTGCTCAGTTCTCGGGCAACAGTATCATGTGCGGCTTCCTGCAGTACTGCGAGAAGAACAAGCCCTGGCAGAAGGTCTGGTGTGTCATTCCTCAAAAAGAAGCTCTAGTTCTCTACTTGTACGGAGCACCTCAGGATGTCAAGGCCCAGTCCACGATCCCTCTGCTCGGCTACCAGGTGGAGGACAGCCTGAGACCCACCGACCCTCCCTCGAGCTTCAGACTATCTCAGTCGAAATCGGTTCACAGCTTCGCAGCAGAGAGCGAGGAACTGAAGCAGCGCTGGCTGAAAGTGATCCGTATGGCGGTGACGGGAGAGGTCCCGGAATCGCCCGAAGAAAACCATTCTGCAGAACTCACCCACGAGTTGAGCTCCAACGGCGTCTGAGCAAACAGAGCAAACCCatgttaaagatttttttggggAAGGCAAAATGTTGACGCTCCTGCTTGCTGCTCCGGTTGGGATTTGAACGCATCCACAATACGGGGCTTTGAAGCACGTGGATATCGCCTCGACCCTTACCTGACAGAATCGAAGTTCACAAAGCAAACGTGAAGCGTTACGTGGAGAAACTAAGACACGCTATTCCACCTTCGCGCCATACTACAGCTGATGCGCCACTGGTTTAAgcctaatgtaaaaaaaaagaatgtacgATTGAGAACATTTATATGTCGTGTATATAGTATATCGAGGCAAAAATCCAGATGCGCTGACGCCGTGACAAGAAAAATGATTTGTATATGCAGGACTTGAGCGCTTTTCAAAAGACAAGATTGCAATttactgcaaatatatattgcattcaGATGCAAAATGCTCTGCATGCAATAGAAACTCCTTCGTTGTGGCCAGCGGATATGTTGTGTTGTCATCGTTGTTGATCCTAGGTCGGGTTGCAGCGGTATACCGGTGTTATTGTCCAGGGAATACAACCGGTCTGAGAATCTGAACGCAAGGCTGAATAAAGCTTCACGTTACTTTTACCCTGATAGCACATGTACATCACAGACACATCTGTACGATATCTGCAACTACAgatgtgttttataatgtttgttCATCTGCAATATGTCTATTGGACGTTACCCATCAGCTGTCAAATAGAGGCCTAGACGTCTTTGAGATGTTTCTGATCTAAAACGTCTGTCGGATTTTGCacacagcagatgctttccagattaAGTGATCTTTAATGGACACCTCGGAAGCCAATTGCTTAGTTTTGATAAGAAACTAAGTCAATTTTATCACAAAATCAAGATAATAGATTTAATAGAAAGATTTATTACAGGAATTTATATGGTAGGTAATTTTATTGCCCAATCGGTTTTTAACCACGAAAATAAGTCGACGAAACGGCTTGTGAATAATGTTTTACCTCAGGAAAGTTAGTTAGCTAGAAGGACTTTAACCTGTTAATAATGATTTAGATATGTTTGAGGTTTTTACAAAAACTTGGGGAAATGTTTAGGAAGGTTTATTAGGAAAATATGTTGAGTATAAATAGACTTTGTCCTTTTTTGCAGAATTTTGACCTTTAGAAAAACTGTTGAGCGGCTGAAatgtattctaaataaatacgaAAGCAAGTCTGGAGTACCGTATACTACGCTGCCGTGGCATCTCCGTTAAAACGGCATACCGTTGCAACTCTCCCAGGACAATATTGAGCAACCCTAACTAAGGATGCAGATGTAACGTCGCTTGCGTTGAATGTAATCAAGTGAGCAGCAACGCCACCTTTCGGTTCGCAGTGCCTCTCAGCACAAAAGTCTGCTGTACCTCAGATTAGTGCCCAAAGCGGAACAACAGCAGTCTAGACATTCAACAGCGTTCACCCGCCATAAGCTGTCTCacgtttttctcatttaaaagcACACTCGAATCAAACATGGAACAAAATTGTAGCTTTAGCGTCAGTAGCTCCGCAGTCTGAACTCACACTTGAATTATCCGAGACGGCCGGTGTGCGATCCATGGCAGTAGATTCAGTATGTAGTGAAATAACTGGTTGTAAATCAATCCTGTGTAGTAGTTTCTGTAATGGATCTTTTATTCGTAGACAGTCATTCGACTGACGGGGGACGGGTGTGAGCTGGTTTGGTTCTTTGGTTCTGTTTATCTAAAGTGGGCAGCACAGTCACCACTAGTAGGCCCGCTGGAGCAGGGACACATGTATATGTTCTTTAcatactgtaattataattttattatttaaaaataatttatagtggaaatgcatgattttacatagcacaaaatttaattttccaTCTCTGTCTAGGACCATTCATCCCTTTGTATTTAAGAAATAAGCATGTACATATATTTCGTTCAGATTTCGTACCTACGGCTGCATATTCTTACCGTTACTAAAAATTGATTTGGCTTGACAGTTAACAGGCCTTCTTTCACGCGCATTAATCTTAAGATACGTTTTTGTTTGAAACCACTATTTGGTTTGAAGTTTCGGAGAAACGCTGTCGTGTGGCAACTACAAAACAATACGAAAGCTATCTGACCTCGAAACATATCACGGCTAGGAACTGTAATCATTTTTATCCTCATCAACCAGTTGATGATCTGACAGTCCGTATTTCCTCAACGGGACATGCCTATATTTGTAGCTACGCACATTTTTACAGCAAATTATGGAAGCGactaggttggtatattaaatGTGAGTTTGTGTATTAAAACATGAATGTGTGCTTATTGTTGCCATTTGAAACAATCCTTACCATGTGATCTGAATGTAGTTTGCTGGTTCTCGCTCCCAGAATATCTTCCACAGTAAAGCTACATCAGCTCTCAAAACCGAGACAGACcctgttttataaataaaactaaagatTACGCACTTTACTGTCTTCTATAAAGCGTACcttgtaaaataaaaccagaTTATTCTGCA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253164.1 lncRNA upstream 297423 22560391 ~ 22563204 (+) True LOC122362810
TU189515 lncRNA upstream 309013 22550445 ~ 22551614 (+) True G128385
TU189508 lncRNA upstream 317094 22536775 ~ 22543533 (+) True G128379
TU189576 lncRNA downstream 52082 22941582 ~ 22944126 (+) True G128431
TU189596 lncRNA downstream 104598 22994098 ~ 22994341 (+) True G128451
TU189598 lncRNA downstream 106251 22995751 ~ 22996031 (+) True G128453
TU189600 lncRNA downstream 108264 22997764 ~ 23001633 (+) True G128454
TU189604 lncRNA downstream 112935 23002435 ~ 23002655 (+) True G128458
XM_043265061.1 mRNA upstream 11584 22817357 ~ 22849043 (+) True bicd1a
XM_043265063.1 mRNA upstream 11584 22817357 ~ 22849043 (+) False bicd1a
XM_043265062.1 mRNA upstream 13176 22817357 ~ 22847451 (+) False bicd1a
XM_043216753.1 mRNA upstream 98085 22668197 ~ 22762542 (+) True tmtc2b
XM_043264819.1 mRNA upstream 223762 22623124 ~ 22636865 (+) True LOC122362983
XM_043264245.1 mRNA downstream 191527 23081027 ~ 23140905 (+) False tbxas1
XM_043264246.1 mRNA downstream 191584 23081084 ~ 23140905 (+) True tbxas1
XM_043216705.1 mRNA downstream 351973 23241473 ~ 23242712 (+) True LOC122323065
XM_043263982.1 mRNA downstream 355037 23244537 ~ 23250136 (+) True LOC122362508
XM_043264185.1 mRNA downstream 361375 23250875 ~ 23258449 (+) True tat
TU189495 other upstream 421948 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 453645 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2304000 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2311309 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2773046 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 567600 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 835136 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1560265 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1694345 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 2106271 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile