RNA id: XM_043263921.1


Basic Information

Item Value
RNA id XM_043263921.1
length 3141
RNA type mRNA
GC content 0.49
exon number 17
gene id sema3e
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21428727 ~ 21466593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGCACGTGGAAGGGCAGTATTTCACAGAgccatagagagagagaggaaagagaggagGCTTCTTCTCATTAGAGGAGGTGGAAGCTCTCCAAGATCAGTGAGCTTGTTGTCTGACACGCTCGCACtcacacatttttatgagtTCGAGGAATGCATCGCCTGTGGTAAGAGTGACAGGAACAGTCAGCCAGGGTTGAGTCACAGCGTTGCGCTCAGTTTAGACACTTTCCTCACGCCGGAATCCACAGAAGCATCTCAAAACACTCCCTACGTGTCAATGAAGTGAGTTTCAGCGCACTGCTCTGATGACGGCAGACTCATTTTCTTCTGCAACCGGCAATTCAGTCATTCGGCGGATGGAGGCTGCCTGTGGTGGATCGTGAGGAGTCAGTGTGAGACGTTCAGAAGAGGAGTGCGTAAAGATGGCATGGGGTGTGTGGACCTTCGTGCTTTGCATGACTCTATGGATCTGCTCTGCAACTCAATCAGCAAAGACTGTGTATCCAAGATTACGTCTGTCTCACAAAGAGTTGTGGGAGCTGAACAGGACGAGAGTGTTTCAGGCCGGAGAGGGGCGTCTGCAGCACTACAGTATGTTACTGGATGAGACTCAGGAAAGGCTAATCATCGGAGGAAAAGACATACTGTACTCTCTCAATCTGGAGCGTATCACTGCCCCTCACAAAGAGaTTCACTGGCCGAGCTCTGAGGAGCAGGTGGGGGATTGTTTAATGCAGGGCAGAGAGAAGCCGGAATGTGCAAACTACATTAAGCTGGTGCAGCATTATAACAGCTCCCACCTCTTAGCATGTGGGACTGGGTCCTTCAGCCCAGTGTGTGCCTATGTCAGAGTGGGCCGTGGAACAGagCAGGAAGGAGAGTTCAGGCTGGAGTCTGATCACATAGAGAGCGGCAGAGGAAGGTGTCCATTCCACCCCAACAGCCCCTCAGCATCCACTATGTACCgtgggGAGTTGTTTGTTGGCTTGTACACTGATTATTGGGAGAACGATGCCGCTCTGTATCGTCTTGGCAACCGCAGTTTCATTAGGACTGAAGTGGGTGACAGACAGCAGCTGAATGAGCCCAAGTTTGTGGGTTCGGCAGTGATCCCTGACAATGATGATCCTGCTGATGATAAGGTCTACTACTTCTTCACGGAACGAGTGGCCAGCATGGATGGAGGAAATAAAGCCGTTTACACCAGAGTGGCCAGAGTCTGTGCGAATGACCAGGGTGGTCAGAGGATGCTGGTAAACAGATGGAGCTCTTTCTTGAAGACTCGTTTGATCTGCTCAGTGGCTGGACCCAACGGCATTGATACACACTTTGATGAGCTCGAGGATGTGTTTGTGCTGCGTaagaaagatgctaaaaatCCAGAGGTCTTCGGTCTGTTTAGCACCACCAGtgCCGTTTTTAAAGGATACGCGGTGTGCATGTATAACATGGAAGACATTCGTGCAGCTTTTAACGGGCCTTTTGCATACCGGGAACGGACTGACCACCACTGGAAGGTGTACGATGGCAGGGTCCCCTATCCACGACCTGGATCGTGCGCCAGTAAGATAAACGGAGGCCAGTTTTCCGGTTCAAAGGAGTATCCGGATGAGGTTCTGCGATTCGTGCGTTCCCATCCCCTCATGTTCCAGGCGGTGCAGCCCGTCCACAAACGGCCCATTCTGCTGGACACTGAAGGGGGACGTAAACTGACACAGCTGGCGGTGGACCGCGTGGAAGCTGAGGACGGACACTACAATGTTCTCTTCATAGGCACTGATAATTCTGTAGtattaaaaatgatcacaatCTACAACAAAGAAGCTGACACAGTTGAAGAAGTTCTTCTGGAGGAACTGCAAGTTTTCAAGGTCCCTGTTCCTATTACAGAGATCCTCATCTCCACCAAACGACAACAGCTGTACGTGGGCTCTGAGCTGGGTGTAACTCAGATCCGTGTTCATCAGTGTGGGCTGTATGGCTCAGCCTGCGCAGACTGCTGCCTGGCCAGAGACCCCTACTGCGCATGGGATGGGTTCACATGTTCCCGGTACTACCCTGCTGGGCTCTATACGAAAAGgCGCTTCAGACGGCAAGACGTCCGCCATGGCAACGCAGTTCAGCAGTGCAATGGGCTTCAGCTTAGCGAAGAACAACACATCTCAGAAAAGCTGGTATTCGGTGTGGAGAACAACAGTACCCTGCTGGAATGCAGACCACGATCACTGCAGGCGTCTGTGACATGGTACATTCAACATGGCGTGGATATGGAGGAGGTGAAAGGTGATGATCGCGTGATTCAAACCCCCCACGGCCTGTTGCTCCTTAAAATAGAGAAGGGAGATGCAGGGGTCTATGTGTGCCAGTCCACGGAGCACGGCTTCGTCCAGACCGTGGTGCATGTCACTTTGGAGGTGTTGGACGAGGGGAAAGTGGAGGGTTTGTTACATAAAGGTGAGGAAGATGAAGGCGATTCTCCGCACAGACCTCCGCCCTGCCCCTTCCCCAGCTTGCCCTCGGCTCCATCCTCCTCAAAGCTCTGGTACAAGGATTTCATGCAGCTGATTGGCTACAACAACTTCCAGCGGGTGGAGCAGTACTGCGAGAAGGTGTGGTGCGTGTCTGACAGGAAAAGGAAGAAACTCAAGGGAATGGCACCCAAATGGCGGTATTCGTCTGGGTCAGAGCAGCGGGCGAGAGCACGGGCACCTCGACACACACAGGGACAGTAAAGACTGATAGAACATCCCAACTCAGTGCAGATGATTACATATAGacagctttattattattattattattaaaaatagaaatgattggTAAAGTCATTAAAGCATTTCTCTTTAGAGTTGCATCATTTGACCTGAAAACCATTAATCTGTATTCAATATGCCAGTTATTTAAAAGTACACAAAGTCATTTTTCCATAGACTTTATAGatgtatgaaataaaaatataacccTTTACATTACGCAATAAACACAGATATACACATTTGCTTTTTTGCTGAAGAgttacactaccattcaaaaatttggggtcagcaaggacacattaaatttattcaaaattgacagaagagactttttttgttgttaaaaatccaattgaaatgaatgctgttcttttaaacttat

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189193 lncRNA upstream 262655 21165272 ~ 21166073 (+) True G128158
TU189192 lncRNA upstream 265977 21161886 ~ 21162751 (+) True G128157
TU189180 lncRNA upstream 299695 21128553 ~ 21129033 (+) True G128149
TU189179 lncRNA upstream 347437 21080769 ~ 21081291 (+) True G128148
TU188900 lncRNA upstream 491286 20894777 ~ 20937442 (+) True G127935
TU189266 lncRNA downstream 185 21466778 ~ 21468553 (+) True G128216
TU189310 lncRNA downstream 171817 21638410 ~ 21641629 (+) True G128251
XR_006246944.1 lncRNA downstream 227853 21694446 ~ 21835021 (+) True LOC122323089
TU189407 lncRNA downstream 567078 22033671 ~ 22068953 (+) True G128318
TU189419 lncRNA downstream 642880 22109473 ~ 22110458 (+) True G128329
XM_043264957.1 mRNA upstream 19887 21378928 ~ 21408841 (+) True sema3ab
XM_043216928.1 mRNA upstream 100398 21296098 ~ 21328330 (+) True sema3d
XM_043264859.1 mRNA upstream 234759 21176917 ~ 21193969 (+) False elapor2a
XM_043264856.1 mRNA upstream 234759 21176922 ~ 21193969 (+) True elapor2a
XM_043264861.1 mRNA upstream 251936 21174591 ~ 21176792 (+) True tmem243a
XM_043264292.1 mRNA downstream 10735 21477328 ~ 21546134 (+) True pclob
XM_043265037.1 mRNA downstream 83552 21550145 ~ 21638322 (+) True LOC122363109
XM_043265038.1 mRNA downstream 83552 21550145 ~ 21638322 (+) False LOC122363109
XM_043216790.1 mRNA downstream 189728 21656321 ~ 21681835 (+) True LOC122323126
XM_043265069.1 mRNA downstream 453514 21920107 ~ 21922673 (+) True lepa
XR_006246928.1 other upstream 872101 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 879410 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 1341147 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 1414942 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 2646569 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 934381 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 968213 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1990507 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 2258043 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2983172 24449765 ~ 24457560 (+) True G128858

Expression Profile