RNA id: XM_043263938.1


Basic Information

Item Value
RNA id XM_043263938.1
length 2370
RNA type mRNA
GC content 0.41
exon number 3
gene id spata2l
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23958161 ~ 23961023 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTCGATCTTGGAAATCACTTTCACTTTAGTTTGTTGGTTTATAAGTAGCATTATAGATAGTTTTAATAGGCTAAACTTCCACATATGTTTAATCACCTGTCAGACTGAATTGAACTTGATGTGGATATATCATCTCTACttttttgattgtttaattttgtagtttttagttcTCTTCACTCGGCTATCCAGAAACTTGCTTGTTTGTGCATCTCTCTTGATGAATTCTGCTTATAAAAAGGACGGTCTCATCACTAGGTACCAGACTAACTTAGAGAGACGAATTGAGAAGGGAGATCGAAGTTTAGTATGCAGGGATGAGGATTTTTGTAAGGAAGTCGAAATGCTCCTTCACAGTGGCAGTGCCCGGAAGATACACAATCTGCATGGATTGGATTCACTGGCAGTGATGGAAAAATCTCTTCCTGCATTTCCCTCTAAAACTGGCCAAATGCGCCTCGAGAAACTTTCCAAGGCCTTTGAAGTGCTGGAGCTTGCGGCATTAAACCTCTACATCTACCCCTGGAGAAGAGAGTACAGACAGGTGAAGATGTTTTCAGGTATGTTCACCCATTTGATCAAACCTGCACTGACACTTCAGCAGGCCAAAGAGCTGTTTGGTTTGCTTGGATACAAGGCTTCAAGTCCTAATGAAGAAGAAGAGTTGGCTCTGAACTCCAAACTCGTTCCTTCTGAATATTTACTCAGTCTTGCTTGTGGCTTCTTTGCTGCCCGGATGGAGTGCCAGCTGCTGCTTTCGGCCTTGGGCTCTGTCGACAGAGATGTGGAGTGGGTTCTACAGCTAGTCAAGGAGAGGCAGGGGGGCCAGAGTCTTCAAGTGGCCTTGGAGAACACCAAGAGAAAGTCAGATCCTGCTAGTGTTTCAGAAGCCATCCTGGCAGGTGACATGGACGCTGAGGTGGATCTGTACACGGAGCAGGCGGATGCTTCTCACATGACATCCGCTTCTGGTTCGCCTTCTCACGCTTCTTATATGACACGGAAAGAGACTGATCTAAGCAAGCCTTTGCAGAAAGATCCCCCACTGTCGAAAATGGGAAATAATGACGATGCAAGGCAGGGAGGACCACTCAACAGTCCAGGTCCAATGAAAAGCTTTGCTGAAGATCGATCTGAAAGTGATGTCCAAAGACATGCAGCGGCAAACGTTATATGCAGCTGTATCAAGCAAGATTCGGCATATATATTGAAGTGTGAACAGTGCCAAAATGTTCACACTATCTTGTGTCCCCAATATAAAGAGTGCAAATTAAGAGGACATACTTTAGCACTGTGCCCATATAAAGCTGACGAGATTTATTCCTCTCAAGATCATCTTAGATTGTCCAAGGAAAAATCTAAAGATTGCCTGAAGCAACATTTTTGTATGGAGGGTTCTACTTCTGATTCGTTTTTGGTGTGCTATGACTGCCAGTTGATCCATGACCACaactgtcattttattaaaatgtgcagtttaaaACACACCGTGCGGCCAACAGGAAAATTACAGCCCCCTCAAGAAGAGGTTAATACCCATAAGAGGCACAAATGTCTTTCTTCTGCACATCATCAGCAGCACTCCCAGGAAACAAGTGCTTCGGAGACAACTTGTGCTCCAATGTCGTATCACGAACATTGCTGGAAGAGTAACCTAACTTTGCCAGAAGTCTTATGCCTCACTTGTAAAGTCTTTCATTTCTCTGGGTGTCCTGTTCGATGGCAATGCTCTCAAGAACACCGCATTAAAATAGTTGATATATTCTGCATCAGTTGCTTGAGCCATGAACTTAGCACCTTATGCAGATATTGTGGTGCCGTGTATTGCAAACtgtgttgctttaaaaataccATGATTTGTAAGTGTGGAAAGCCTTTCCTCAACCCAACTTCTGTTTAAGATGACTGCATGTCAGCCTTACCATATGTGGCTGAAGACACTGTTTTTAATCTCCGTAATAAGCCTGTTATTATTTTGCTACTTACACAATAAGTTCAAATACTGGGTAATATAAACATGACAATCTTACACTTTCAGTTTTTgatatcagaaatgtttttgtatgacAGAAGCCAAATATTTCAGGAAAGTAACAAAATTCACTGTAAGAGTTGACTATCTCTTACTAATCTATATATCATAAAGTAACATGGCTCATATCTAATCTGTTAATGGTGAGACTGTGTGATGGCCAGTCCAAGATTTGATGTATTCAGTTATTAGTATAATATGTTCTAGAAAAATTATGGCTTTGGGTCTTAGCAACAACTCCAACCATAGTGtcatataattaaaagaaatgtacatGACTTTTATTATGGTTGTTTAATagaattcatataaaaataaagaagcaaAAAACAGAA

Function

GO: NA

KEGG:

id description
K17595 SPATA2; spermatogenesis-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189981 lncRNA upstream 171347 23785024 ~ 23787163 (+) True G128725
TU189935 lncRNA upstream 598953 23358451 ~ 23359557 (+) True G128699
TU189930 lncRNA upstream 621421 23335791 ~ 23337089 (+) True G128696
TU189624 lncRNA upstream 878200 23068310 ~ 23080310 (+) True G128476
TU189621 lncRNA upstream 891442 23066812 ~ 23067068 (+) True G128475
TU190019 lncRNA downstream 67466 24028489 ~ 24029817 (+) True G128753
TU190041 lncRNA downstream 95697 24056720 ~ 24063271 (+) True G128770
TU190043 lncRNA downstream 97330 24058353 ~ 24066103 (+) True G128772
TU190086 lncRNA downstream 336086 24297109 ~ 24297333 (+) True G128803
TU190087 lncRNA downstream 336586 24297609 ~ 24297845 (+) True G128804
XM_043265074.1 mRNA upstream 6299 23937000 ~ 23952211 (+) True vps9d1
XM_043265075.1 mRNA upstream 6299 23937000 ~ 23952211 (+) False vps9d1
XM_043216813.1 mRNA upstream 22200 23928290 ~ 23936310 (+) True utp4
XM_043264259.1 mRNA upstream 30922 23915929 ~ 23927588 (+) False wfdc1
XM_043265046.1 mRNA downstream 2005 23963028 ~ 23970059 (+) True uri1
XM_043264330.1 mRNA downstream 173390 24134413 ~ 24181542 (+) True LOC122362775
XM_043264087.1 mRNA downstream 316259 24277282 ~ 24286775 (+) True cry1b
XM_043264094.1 mRNA downstream 326115 24287138 ~ 24291459 (+) True zgc:153031
XM_043216488.1 mRNA downstream 347153 24308176 ~ 24314980 (+) True si:ch73-62b13.1
TU189952 other upstream 221664 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 378708 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1519831 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1551528 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3401883 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 488742 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 622822 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1034748 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1333720 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1333720 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile