RNA id: XM_043263955.1


Basic Information

Item Value
RNA id XM_043263955.1
length 8002
RNA type mRNA
GC content 0.51
exon number 48
gene id ptprq
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20160121 ~ 20197815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTCACAGTGACAGCTGTCACGTCCAGTCGGATTGCATTGTGTTGGACTGCCCCCGATTCTACCCGTAATGCTCGTTTTGAGCACTTCATTTTACACTGGGTGGATCTAGTCTCTGGCAGAGGCCATGCCATTCGCTTGGACAAGATGAATCGGAGCGCTGTGATTGGTGGGTTGGCAGCGTATCATGCTCACAGGATCACAGTTGTGTCCGTCACGGCTCAAGGTGTGGAAAGCTCTGACAGTCGGTCCGTGACTGTTATCACAGaGGTTAGTCCTCCACGCCGGGTCTCGGTTGATGCTGTGGGGCTGGAGAACATGACTGTGTGCTGGTGGCCTTCACTGGACGAAGATGTTGGCAAATATTACATTCGGCTCCACCCACAAACAAATCAGGCTCAGACTGGTGAATTCTGGATAAATGGCTCCACCTGCATCTCGCTTACACAGCTCAAGTCAGGCGGGACATATGAAGTGGGAGTGGCTGCAGTGAAGGGAAGAAACATGAGCGTAGTGACAACCATACAACAGACTTTAAAACCTGATAGCATCCGGATAGCTGTCCCTTACAAAGTTGGCACACACTCTGTGGAGCTCTTTGTGCAGATGCCcagaaacagcatttatgaCGGCATCACCCTTACTTACCAGAATAATAAATTGTGGAGGCCAGTGTCAAAAGACAGCACTAAACTGTTAGTCGACAACCTGAATCCAGGAACGCAGTATgactttaatgtgtttgtgacCAGCAGAAACACCAGCAGTGAAGCCTATGCACTGCCACCTGTGAGGACCTGTTTGGCTCCTCCCACTCATGTGCGCGCTGGTGTTGTGACTGACAGCTCTGTAGAGCTCCTTTGGGATGGGGCTGAGGGGGCGGGCCATCATTATGAGGCGCTGTGTACGAACTGCGCTGATACTGTCATGGTGCAGAAGGTAGTCCACACTAGAGCAATTTTTAAAGATGTGACTGCAGGAAACCTATGCAACTTTTCAGTCCGAACCGAGAAGGAGTTTTTCAGAGACAGTCTGGCTGTGTTTATCACCATAAGATCTGCTCCCAGCCCGGTCACCTTGTTGCCAGTGCAGAGGACATCAGCGTCTCTCAGCGTGCGCTGGAGGGCCGGCCGGGGGGTCTGTGACTCATTTATCCTGTCCATAAGAAACTCAACCTTTATCCTGCAGACCAGTCAAAGTGCGTCTGATGACAGaACGTATCGCTTTGACAACCTGTTGCCTGGAAGTGTGTATACTGTTGAAGTGAGGAGTGTTAGCGGAGAAAGGCGAAGTTTACCCGCTGCTGTAAACACTAACACACTTCCAGAACCTCCTGATGACCTCACTTTCATTGAACAGGAAGTGAGCAGCATGTATGTGATGTGGACACGCCCACCGGGCAAAGTGGACGGTTACAGGCTTCAATATGGCTTTGCGGGTGACCTCCCTCTGCAGCACCAGGTTGATCGTCATGGCAACAGTGTCAGGATTCATGACCTGACCCCAGGAAGTGATTACAGGTTTGAGATCCAGTCCTTCCTGGGCTCAGATTTCAGCAAGACCACATCTCAAAACATCTCTACTAggcCAGCAGGTTTATGTTCACTCTCTGTGTCTGACATCAATGGGACGTCTGCAACAGTGTCATGGAAATCAGCCACTGGTCACTTTGATTTTTATAGAGTCGTGGTCAGTAACAGCTCTCATGTCTGGACATTAGATGTGAGTCCACACTCGCAGCAGGTCACTGTCAGCAGCCTATGGAACGGCTGCTCGTACAACATCACTGTACAGCGCTTCAGAAACAACGTCAGTGGAAACGCCGCCACAGTCACCATACATACAGtCCCTGAGAGTCCTGAGGGGTTGCGAGTGATAAGCATGTCATCTCGTGCTTTTTCACTCCACTGGTTGGCATCACCTGGATGTGATAAGAAGTACATGGTCCAACTGCATCCTGAACACGGCAATATCAGCATCTCCACCACCACAGCAGACGGCGGTGTCCAGGCTCAAGTGTCCAGTGTAACCCCTGGAACGTCATACACTGTGACGGTCAATGCGATGGCCTCGTCAGGGTTCAGCTCACCTGTCAGCCGAATACTCGTCACCACTAATGAATCCTTACCTGCGGCCCCCTCTAAGCCAGAAGGTGAACGGGTCGGTTCCACTGGGATCCTGCTGTCCTGGCGGATGCCTCTCGACCCCTCAATTCACTCATTTGTCATCAGATACAAGGAAATGTGTCCATATCCCGACCCTACCTTCACTGAGGTCACCAAGAGCCTGGATATCCCAGAAACCCTGCTGAACACACTCACCCCTGGAGCGACGTACAACATCAAGGTTGCAGCAGTAAACAAGGCAGGAATTGGACCTTTTAGTCAGTCTCTGTACTACAAAACAGCAGAGGCCCCTCCTGGTCTGGTGTCAAACCTCACAGCGTTCGCCGAGGATCACACGTCGGTGTTAGTGACATGGTTTCTTCCCGTACGCATTAATGGTCTCATTACTAAGTTTGCAGTGAAAGTCAAACATGCTCGAACCGGCATGATCGTTCGCACGCTCGAGCTTAACGCAGAGGACATCATGAACGGAGCCCTGCCTCACTGCAACGATGCAGCAGACATCTTATCTCGTGGAACTCCAAGCCCGTCTCAGTCTTCCCAGCTGACCTCTGCCGTGCTGCCCACTGTTACTCTCTCAGCCGTACCTCCCGCCTCCATCTGGAGTGTTCCAATCAGCGTGAAGATTGATGAACTCCGCCCCTACACTCCCTATGTGTTTGAAGTCTCCGCCTTCACCAGTGATGGCGAGGGCCAGATCGCCAGCACTATGGTCCGCATGCCAGAGGCTGCCCCCGAAGACCCGcctcaaaatgtaattttcacaaACATCACTTCTAAATCTCTGTCTCTAACTTGGGAAACTCCAAAGATCACCACAGGAAGGTTCAGTTACGTCATCCAGCTCCACAGCTCTGAAGggatTATTAGTGAGAACAGCACAATCGAACTGGCATTTATGTACACTGGACTTACTCCATACACCAAATACTATATCCATGTGATGGCCAAATCAGCAGGGGCCACAGGACCGGAAGCAGTGGTCAACATTACAACACTAGCAGAAGCTCCGAGTGCTGTGTCTCATCTGACAGCAGAGGCTGTGGACTCCACTGCAGTCCGTCTGTCCTGGAGACCTCCGAGCCAACCGAACGGACTAATCACACACTATCGGATACGAGTGTTATACCGCATTACTCTTGTACAGGACATCACCCTGCGAGGACAGAATCCTCCACTTCGTCGCAATGCAAGGTCACTTGACATCACCACATCATCTGCGTTCATTCTCACCAACACTGATACGgaactgacctctgacctccctCTGACCCCGAGCACCCCTCACACACCTCCACCCTGGCTCACAGTGACCCACGACAGAACTGATGTATCTGTTGAAGCTGTGACTGAGGAACCGGTCACTATAGGAACTGATGAAGCACCATTGGTTAATTTAAGCCCCTCCCCGGCCCGCCGTTTCACTAGGGCGGTGGCCACAGACTCCACCCAGCAGCAGACCAATCCCCCAACGAGAGCTGCCACCACTATTGGAATAGAGGTCCTACCTGCCACTGAGGAGACAGCAGACCTGTCATCTGACCACATCATGTATGTAGTTAGAAGACTGAGTCCTTTCACTGAGTACACATTTAGCGTGACAGCAAAAAACACCATTGGAGAAGGGCCTTCCACAGAAGTTAAAGTGAAAACAACTGAACAAGTGCCCAGCTCTGTTCAGAATGTGTCCTATCAGAACCTGACCTCCACCTCCATCCGTGTTACTTGGGAGCCGCCACTGAACCCTAATGGCAAGATAACTCACTACACTGTATATGCCCAAAATCTCCTTACAAAGCAGCAATTACAACAGATGGCGAACACCACCACTGCAGTGCTCACAGGTCTGGACAAGCACAGCAGTTATAAGGTGTGTGTGACCGCATCTACTGCCGTGGGGGAAAGTCCACTAACTAATGAAGACTACATCTTCGTCATGACACTAGAGGATGAACCGGATTCTCCCCCGCAGAACCTGACAGTCATAAAAACCACTTCCTCCACTTCTACTCTCACCTGGTTTCCGCCAGAGAAACCCAACGGCATCATCCGCCTGTATGAGGTCTCCTACACCAACGGCACATACAGCAACACAGTCAACAGCACATCACCTACTGCCACACTGCGCTACCTGAAGCCACACACACGCTACAATGTGACTGTCCGTGCGTTTACGCTACACGGACACGGGAACCAGATTTCTGATACTCTACAGATGCTGTCGGGGGAGGATGTGCCTGGCAGCCCCCCTTATGATTTGACCTATGAGAACATCGGATCCAGCGAGGTGAATGTGTCATGGTCGCCGCCGCTTCTCGCAAATGGCATCATCTTGTTCTACAACGTGGAATACTGGAACGCCACACACAGTCTGAACCAAACCACACACGTGCCTTATGTCATCCTGTCCAACCTTCGGAAGTATGCACGCTACCGTATCAGCGTACAGGCCGCCACACAGGTGGGCTTGGGAAACCACACGAGTGAGATCCTGAACATCACCACGCTGGAGGACGTGCCGAGTGGTCCCGTCCACAACCTGACTGCTGCAATCTATAGCTCTACGGCTGTAGTGATCAGCTGGGATCCTCCTCTGGAGCCCAACGGCAGAGTCTTCTATCAGCTGAGCCTCCAAGAGGCGGGTATGACCCACTCGTCCATCAACCGCACGGTCAACATCACCATCACCAAAACTACCACGGACAACATTTACCTCTTTACCAAGCTCAGGAAGTATTTTCCCTACACCATAAAAGTCACCCCAGCAACCAGCGCAGGGTCGGCCGTAAACCACACTGCAATGCAGCACCTGCGAACAGATGAAGATGTCCCAAGTTCTCCTCCGTTGCCTGGAGCTAGTAAGAATCTCTCCAGCACCTCCATCCATGTGTCATGGTTCCCTCCTGTGGAAGCCAATGGCGAGATCATAGATTATGCTGTAGTTTTACAGGGTCCTGGGACCATCAACAAAACATACACCACTGAAACACACCTAATGCTCTCAGAACTCACTTCATTTACACCTTATAATCTCTCCATCGCTGCAGTCACCCGTATAGGTGTTGGGCCTTCCGTGATTATTCCACTGCATACTGATGAAGCAGTCCCAATGTCTCCACCACGCaatctgattatttttaacCACACTGTGAATTCAGTGTGGCTTCAGTGGGAACCAAGTCCAGAGCCAAATGGAGTCATCCAGCACTACGGATTCCGAATACTTGAACTGAACACATACACTTTCAGCTATCAGAACTCATCAGATGCATCCACACAAGCAGAACTGAGTGACTTTAAACCTCATAATTCATATGAAATCAGCGTGTGTGCATTCACTAGAGCAGGGAATGGGGATCAGTATAGCATGCCTGTCATATTCACCACCAATGAATCAGTGTCAGATGCCGTCGGGAATCTGACCTGCTCTGGATTGGATTGGAATTCAGTGTACATGGAATGGGAGCTTCCGATTCATCCTAACGGAGAGATTCTGTACTACCTCATTCGCTCTGGAGATCTAGAGGAGGAGGCTCATCCTCTCGTGCTCACAGACACGGTGGCACACACATTCATCGGCCTGTCGCCTAATGTTTTCTATGTCATCAGCGTGGCTGCAGTTAATTCAGCCGGAACAGGGGAAGAAGCCAACTGCACCGCACACACTCCACCAGAGTCAGTCCCTGGTCCGCCCCAGTCCCTGACCATAATGGATGTGACCTCTGACAGTGTGTTTTTAAGCTGGCAGCGTCCCGTCCATGTTCCTGGTCTGTTGCAAGGATATAATGTAGAGATTCAGCAACTGGCAAGAAGTTGTGAGCCAGAGCAGCACAAGGAGTCCTGTGTGGACAGTGAGCTTGTGGAGTGGGTTGAAGGAGAAGCCAGTGGGGTCACGCTTTCCCCTCTGATGAAATACAGAGAGTACCGTATCAGACTGGTTGCCTTTACCAGAGCCGGAGCCGGAGAACCCTCCAAATGGatccacacacagacactcgcAGGAAACCCCGATGCCCCCCCTGGTGCCATATCAGTGGTTCCTTCTCCCACTGGGTTAAAGATTGTGTGGAACGAACCATCAGTAATCTCAGGTCCCACCTCATACCTCATTGACATCACTGCTTTGGATGGTTCGGGATATAACATAAGTCTTGTACGGTATTCAGAGGAGATCAGGGCGGTGGTAGTCGGGAACCTCACTGCATTTACCTTGTACTCTGTTATCATTACCGCCTTCACGGGGCAGCTTTCCAACGCTCGCACAGACGGCAAAGCATCCAAAGCCATCCTCGTCAGAACCCTGGAGGATGAACCCAAAGACCCTCCCAAAAACGTGACATTGACGGTGATCCCAGAGGAAGTGACACGTGTTTATGTAACATTCTCTCCACCGAATGAGCCGAACGGAAACATCAGTGCCTATCACGTCGCCATCTATCGAAATGGACAACTGGACTTCTACATTAACAGCCTGTCTGTGATCAGCAATCCTAATAACACTATGACAGCCATTATAGATGGTCTGAAGGGTGGATTCAATTACAGCATAAGGATTGCAGCTGTGAATGGAGCCGGTTTAGGACCAAGTTCGGAGGTTCAGGTCACCACAGGTGTGAAAGCACCACCAAAACCATCCCGGATGCCCCGGGCTGCTCTGAACAACGCAGGTGTCATCATCTCTACTTCAAAGACCATCACCATTGAAATGCCTGAATGCTTCTTCACTGATGACCATGGACCAATCCAAAAAGTCCAGGTCATTGTTTCTGAACCGGcagTGATGGACTACGGGAATCTGTCCAACTGGAAGAGTGTTTTCCTCTACCCTACTGCGCCATACCTGACCGACGAGGGCTTCGTGAACCCAAAGTGCTCGGAGAAAGCAGAGCGCATGAGCACAAACACTAACACATACGTTATAGGAGCAGATGATAGCTGCCTGTCTGAACAGGCCAAGACACTTTGTAACGGTCCCCTCAAACCCAAAACATATTATGTgtTCAAATTTCGGGCAACAAACATCCGTGGGCAGTACACAGACTCTGAGTACTCAGACAGGGTCAGAACTGCAGATGACCGCCTGCTGACCAGAGATGAGCAGATCATTCTTGGGGTCCTGCTGTCATTTTTCCTggcattgtttttaattctgCTTATATACGGGTCTGTGAGGATCCACCGCAGGCAGAAGGAAGGTGGGACGTACTCTCCACGCGAGGCTGAGATCATTGAGACCAAGTTCAAGCTAGATCAGCTCATTGCAGTGGCCGACCTAGAGCTCAAAGAGGAGAAGATTAACCGGTATTCCTCTTTTTTCTATAGAAGGAAGGAGATTTTTGTCATCCAGCTGCTAAGTTACAGGAAATCTCTCAAGCCAATCAGTAAGAAATCTTTTCTTCAGCATGTGGAAGATCTTTGTGCCAACGACAATGCCAAGTTTCAAGAGGAGTTTGCTgagctGCCGAAGCTGCTTCAGGATCTGGCCACATCAGACGCTGACCTGCCGTGGAATCGCTCCAAAAATCGCTTCACAAACATTAAACCctatAACAATAACCGAGTGAAGTTACTGTCTGAGCCAGGAATGCCGGGGTCTGACTACATCAATGCCAGCTTCGTCTCCGGCTATCTGTGTCCTAATGAGTTTATAGCCACTCAGGGTCCTCTGCCTAGTACTGTCGCAGACTTCTGGAGGATGATTTGGGAGACCGGGACCAAAACCATCGTCATGCTCACTCAGTGCTTTGAGAAGGGccggATCCGCTGTCATCAGTATTGGCCAGAAGACATAAACCCGTCACTGTTTTTGCTGACATCATAATCACTAAACTCACAGAGGATGTGCATCCTGATTGGACGGTCCGGGTGCTCAGAGTG

Function

GO: NA

KEGG:

id description
K16910 PTPRQ; receptor-type tyrosine-protein phosphatase Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188509 lncRNA upstream 168485 19985741 ~ 19991636 (+) True G127663
TU188470 lncRNA upstream 235319 19781765 ~ 19924802 (+) True G127637
TU188465 lncRNA upstream 533600 19626153 ~ 19626521 (+) True G127632
TU188463 lncRNA upstream 536839 19623013 ~ 19623282 (+) True G127630
TU188450 lncRNA upstream 583962 19575889 ~ 19576159 (+) True G127617
TU188679 lncRNA downstream 4933 20202748 ~ 20211417 (+) True G127766
TU188681 lncRNA downstream 4933 20202748 ~ 20215231 (+) False G127766
XR_006253191.1 lncRNA downstream 23489 20221304 ~ 20224584 (+) True LOC122363139
TU188698 lncRNA downstream 58897 20256712 ~ 20281295 (+) True G127780
TU188708 lncRNA downstream 127515 20325330 ~ 20383758 (+) True G127785
XM_043216815.1 mRNA upstream 5669 20121656 ~ 20154452 (+) True otogl
XM_043216823.1 mRNA upstream 41689 20101629 ~ 20118432 (+) True si:ch1073-390k14.1
XM_043216824.1 mRNA upstream 41689 20111238 ~ 20118432 (+) False si:ch1073-390k14.1
XM_043216814.1 mRNA upstream 66520 20067678 ~ 20093601 (+) True zfhx3a
XM_043216819.1 mRNA upstream 104814 20017374 ~ 20055307 (+) True glg1b
XM_043264419.1 mRNA downstream 32339 20230154 ~ 20238801 (+) True wash1
XM_043264422.1 mRNA downstream 52587 20250402 ~ 20256447 (+) False fkbp4
XM_043264421.1 mRNA downstream 52588 20250403 ~ 20256447 (+) True fkbp4
XM_043216543.1 mRNA downstream 61954 20259769 ~ 20278496 (+) True b4galnt3b
XM_043264561.1 mRNA downstream 88650 20286465 ~ 20311133 (+) True c2cd5
TU188630 other upstream 72540 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 146335 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1318586 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1377962 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1598511 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 350012 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 353333 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2203159 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2236991 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 3259285 23457100 ~ 23579802 (+) False cdh13

Expression Profile