RNA id: XM_043263956.1


Basic Information

Item Value
RNA id XM_043263956.1
length 1494
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC122362491
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20155466 ~ 20160178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCTCTTATGACCACAAAGACTGTTTTAGGATGCTGCTGAAGTTTGACTGACCATACTATTGTAGTGTAGGTTATTATTACAGTGCGAGCTGCAAGGCTAAAGAGCGTAGCGTTTTGCTTTAAGGATATGATGCCGTCTATGGATACTGGAATTATGGGATGGAGCTCCATGGACAAAGTTCTGGCATTGTTTTGGCAACTTCTGCACTTCTTTCAGGCTTTCAGCCTTCCATGTTCCAGAAGTCCATCCTCTGTCCATGTGCAGGTGGCATTTCAGTGTTTTCCATCCCGGACAGATcatttttatacactttttttggGAAACAAGGTTCTGAGCAGTACAGCAGTGTGTGaagatgtgtgtgaatgtgtgatgAAGTTCAGGGTACCACAAGTTTCTGAGAAGCTGGAATTCAGTCTACAGTCACACAATGGCACAGAACTGCTGGATGCCAAGACTTTCCACTTTGCTCCTCTCATGACATCCTCTTTACGCATGAATGTCTCATCCACGACTGCCGTGCTCAGCTGGCCTACTTTAGATGACGGAGATGTCTTGGATGTGTGTTTGGATAAGCACTGTTGGGTTGTGTCCCGTTTTCAGCCATTCCACCAGGTTACAGGGTTACAGCCTGGCCGTCGTTACAATGTCAGTGTGgcaaagaaaacattcatcccTCATCTCCAAATTAATGTCACACAAAGCCATCAGCTGGGTATAAAGACAGGTCTGTGTCCCGCTGGCTGGCATGCTGTGGGATGGAGCTGTTATAAGGTGAACCTGATGTTCCTGCCATGGTCTGGAGCGAAGCAAGAGTGTGAAAGATCAACCCCAGGGTCGCATCTGGCCAACACAAAGACAGATGCAGAGTTTCTATCTGTCATATCCTTCTTAGAATCCTATAACCATCTTCAGCTGTTGTGGACAGCTTTAAATGACCGTGAGACAGAAGGTGATTTCCGCTGGTCTGATGGCTCAAcctataatttaaatattgaaatgacATCATCGCTTGCATCCAATCAAACGGGCTGTGTTGCGATGCAGAAGAATGCGACCGAGTGGGATTCTTCTTCACTGCTTTCCTGTGTTCCCTGCAGTTCCCCTATATTTGTCAAGAAGAGTTGTCGCAGAGCAGCGGTGAATGGCTGTAtttggagagtgtgtgtgagacagaagCAGTGTTTATCTGGTCAGATGTATCTCACCTGGATTTATCTGCTGGTTTTACGCTTGCTCTACAATCAGAAGATGATTCAAAGGATCCAACCGTCTCACGTGTGGTGCTCACAAACACTCAAGACATAGTGAGAGTTCAAGGTCTCTCTCCTGGACACGTCTATCATTTCTCACTGGTTCTTAAACGGCCCAGTGGGGTGTCTCAGACACTTGGGCCCATTTTTATTGCCAATACAAAGCCGAATCCTCCTCAGAATCTCACAGTGACAGCTGTCACGTCCAGTCGGATTGCATTGTGTTGGACTGCCCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188509 lncRNA upstream 163830 19985741 ~ 19991636 (+) True G127663
TU188470 lncRNA upstream 230664 19781765 ~ 19924802 (+) True G127637
TU188465 lncRNA upstream 528945 19626153 ~ 19626521 (+) True G127632
TU188463 lncRNA upstream 532184 19623013 ~ 19623282 (+) True G127630
TU188450 lncRNA upstream 579307 19575889 ~ 19576159 (+) True G127617
TU188679 lncRNA downstream 42570 20202748 ~ 20211417 (+) True G127766
TU188681 lncRNA downstream 42570 20202748 ~ 20215231 (+) False G127766
XR_006253191.1 lncRNA downstream 61126 20221304 ~ 20224584 (+) True LOC122363139
TU188698 lncRNA downstream 96534 20256712 ~ 20281295 (+) True G127780
TU188708 lncRNA downstream 165152 20325330 ~ 20383758 (+) True G127785
XM_043216815.1 mRNA upstream 1014 20121656 ~ 20154452 (+) True otogl
XM_043216823.1 mRNA upstream 37034 20101629 ~ 20118432 (+) True si:ch1073-390k14.1
XM_043216824.1 mRNA upstream 37034 20111238 ~ 20118432 (+) False si:ch1073-390k14.1
XM_043216814.1 mRNA upstream 61865 20067678 ~ 20093601 (+) True zfhx3a
XM_043216819.1 mRNA upstream 100159 20017374 ~ 20055307 (+) True glg1b
XM_043264419.1 mRNA downstream 69976 20230154 ~ 20238801 (+) True wash1
XM_043264422.1 mRNA downstream 90224 20250402 ~ 20256447 (+) False fkbp4
XM_043264421.1 mRNA downstream 90225 20250403 ~ 20256447 (+) True fkbp4
XM_043216543.1 mRNA downstream 99591 20259769 ~ 20278496 (+) True b4galnt3b
XM_043264561.1 mRNA downstream 126287 20286465 ~ 20311133 (+) True c2cd5
TU188630 other upstream 67885 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 141680 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1313931 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1373307 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1593856 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 387649 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 390970 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2240796 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2274628 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 3296922 23457100 ~ 23579802 (+) False cdh13

Expression Profile