RNA id: XM_043263982.1


Basic Information

Item Value
RNA id XM_043263982.1
length 3825
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC122362508
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23244537 ~ 23250136 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAATTTCTCTTTTCCCGCAACGAATATTTACACTGACACTATGAGTAGTTCATGCAGTCGATGTAATGTCGAACGAGATTTAATTATTCCGAGATTAATCTCACTTTGATGTTCTATAAGTGAAAGTAGATTGTTCCGTCATTCACTTCCTAAACGTGTCCGGACATGCCTaaacatttgacatttaaatagaGCTCATCATCATCAATGATTGGATGTTTCCTGCATGCAGTAGCTCTTAAGAGATGCTCTGCACTGAAAGCAACTGATGCCTGGATATCATGACAGTGTTACAGATTGAAACTGCTGCTTTGGCTGGAATGAGTGAAAACTTTTGGTTGGAAAAAGCCTGTGCTCACCTTATTCCTGCTTTACCATTGTGGATCATTGAATATGCATGGACTAAACGGATGATGGAGGTCTTAGAAGTTCTAGGACCCCCATTATGGCTAGAAGGTGACTGGCATCTTCTGACCCTTGAAGAGCCATGCAGAATCCGTGTGGTGGCAGCAGAGGTCTGGAGGATCATGCAGACCAGAGACATCAAGCACTTTGAGAGAGTAACTGAGTTTTTGGATGTTACGTACACACTTGTGCCAAGACTAGTGACTCCGATCAAACACATGAAGATCATGTTTGGTCTGCAGACTCTGgttaTCATGTGGATGTTGTGGAATGACCGAAGCACTGATCAAATCTCTGAAAAGATTGAAAACTTTTTCCCTAGAAGCCTTCCAGAGTATCACAAATGTAGCCGTAGGAACATGGATCTGATGCAGAAAAACCAGAAAGATTTCAAGTCCTTTGCTCATGTTCTGACCAGAGACAGGGATGTGCGTGAGACTTACATTCGGGATTTATTGGAGGAGCAATATGGTGAACGCTATGCACAGAAGCTGGAGGAGAGACTTGCACATTATTTAGGAGAGCTAGATAAAGTCCTGCCACAACCATCGTGTATTGAACAGGTACTGAAGTCCCGTTCATATGGGAAGGGAGAAAAGatactaaaaaaattactttcaagGGATAGTGCATCTGTAGCCACAATTCTGAAGAGACTCCTGCATTGCGCTGTAGCAACAAATCAGAGCCTTGCTGACAGTCTCTCACCATCACTTTTAAATCCTTGTGAGGTACAAAGGGAAGCTGAAGTAGTTAAACCATCCAGTGGTACCCTCTGTGTATTTTTGAGGCCATCTCAGAACACCACAAAAAAGGATCGACTCTCACAAACCAGCACAAAAGGTTCTCAGGGCTTGTGGCAGAATAGAAACACAGAAACCATTTTACCTCAGGAGAAGATTTGTGATGATAGAGTAATTGTTACATCTACGCAGTTGTCGGATTCTGATATAGATCAGAGTGATTTCAGCCAGTCTCTTCTGGTTGGGAGGCACAGGCAGGAGAAAACTCAATCTGAACCAGAACAGAAGGAAAGTGAGCCTGTTTTTCCAGAGCAGATCTGCTCTTGGCATGGCAAAAAAATGAGGAGCATCCTTCAGGAATGTTCTGAAGAACTTGAAGGAGAAGCCATACAAGCAGAATGCACTCCCACATCAACCCAGAGCACTCCACCTCTTCTCCCGTATACATCACAACCTCAAGGATCTCCAAACCAGCACTCGTTGTCTTCTAACGCAGATTCATCCTCCACAAACATTTCACTGTCCTGCATCCAGCAGGCCAGTCTTTCACCAGTGTCCTCAACGAATCCAGATGCTCTTTCACCCTCAGTTCTCCAACAGCCCTGCTCATCGCAGTCCGCAGCCTCAAAGCAACTTGCAGTCAATGCAGGACAGTTTTTTGCCACCGCTGTCTTTGCTGAACCAAGCAGAActgataaacacattttgaaacTGTCCTTAGAGAGTCAAAGCTTCCTAATGCAGTCCAAGTGGCTTCAACCTCAAGTGTGCCTTAATAGACTAAGCAAGGAAGAATGTGCCAGAGCCATGGATTCATACAGAACCTGTGACATTTTAGAAAGAGAACTAGAACCTGAAGACGATCAATACATGTTATTTGATGTAAATGCATTGTATTCTGATTCATACTCAGAAGACTCAGATTCAGACTCTGATGACCCTGATTACAAGCCTGACTAATACTAAAGCAGACAACATCAAAAagatagaaatatattattcatgtttttttagatGCATAGCTACTCAAACATCTATTTTAGAGTTTGCTTTGGATATTTGAATGAACACGCAATAGGGTTGGGAAAATATGCCGCTTTTTAAACCAGTTTTACCTCATCACTGTACCTCATGCAGGTCAAATTGCTTTAAGCTCTTGATGGTCAGCAGCTCAGCATTTTCAAAGAAACCAGTTGCTCCTTAATCTTAATCCAACAGTCAAATCCTCATGCAGTCCAAGTGGCTTCGACCTCAACCGTGCCTTAATAGATTCACCAAGGAATAATGTGCAAGAGCCATGGATTCACACAAAGCCTGTGACAATTTAGATGAAGAAAATTGCTGCTTTTCATCTTATTTTACCTCATCGTTTATCAAATGCTCAGTCTTTCACCAGTGTCTTCAAAGAAACCAGTTGCTCCTTCATCTCAATCCACAGATTCAAAACAACATGTCACTTTAGGAATCAATGCAAGACAGATTTTAGACACTATTGTCTTCGCCAAACCAAGCTGAACCGATGAACACAATCCCAAACTGTCCTAAGCTTCTTCATAATGTCCAAGTGGCTTAAACAGACTAAGCatattttatccattttaataGAACAAGAGCCTGAAGATTATCAATACGTGTTATTTGATGTAAATGCACTGTATTCTGATTTATACTGAGAAGATTCATGACCCCGATTACAAGCCAGAAATCAGAAAACGATAAAAAGGTGCCAGCGAACGTGGTCTTcggcatgtttttaaatgcgtaAATACTCAAACATTTACTTCGGATGTTTGAATAAACTCACATTAGGGTTGGGAAACTATGCAGCTTTTTTTACCTCTTAGTTTACCTCAGAAAGGTAAACTTGCCTTAAAGTTTTGAAGGTCAACGCCAAACTATATGTGGCCTGTATGTTTTGTAATCAGACATTTTAGCCTTCATTGCCCTAAAGTGTTAGTGCATAACATGCTTTCTAGTGTGGAACGCTGTGTACTGTTGGTTTTGTGATGCGTATGGTGGGTCAGGGTTATCTCTGGGTCTCTGCATGGCGTGTTTTAGTGGATACATGTTGACATGCTTTCTTTGATCGACCTAGAAGGTTATGTAAGGACAGACATTTTGGATTATGATGTAAGTTTTCTGACTTTGTGTGAAGCACACCCAGCATTAGGTTGTACTGAACCTTCTTTCAGTTATATAGAACATCAGGTCAGAAATGTTTTAAGGTTAATCTTAGGCTCACTAATTCAGCGCTACTTGTGTACGTGCTTGTTTCTTAAATAAGTGGTTATGCcaagaacaaaaacatgaaagagaGTTGTGAGTTTGAAGTTCAAGGTTATTACTCTGTAAAACTCCATTCTGTCTTTTGTTTACCTGACTTGAGTGTAAATTTGACTTGATGTTATTGCAAACTTCTTTGTCGTTATTGCATCAGATAGAGCGCACTCGTTCATATCACGTATAAAAAATGTCATCTAATGTCATTAGGTGTTTTGGATGATGATTGTTTGAGCTTGAAAGAGTTACATAAATCATCCAAGTGACagcctttcattttcttatttattttaaagccgcatgacttttattaaagcaatagttcacccaaaatgatgGTCATTATTTGGTCGTTTTTTACCTCCTGTAGTTGTCCTTTCATTATACTGTGAAAca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189624 lncRNA upstream 164227 23068310 ~ 23080310 (+) True G128476
TU189621 lncRNA upstream 177469 23066812 ~ 23067068 (+) True G128475
TU189616 lncRNA upstream 184596 23057387 ~ 23059941 (+) True G128470
TU189615 lncRNA upstream 187315 23057020 ~ 23057222 (+) True G128469
TU189613 lncRNA upstream 190008 23053402 ~ 23054529 (+) True G128467
TU189930 lncRNA downstream 85655 23335791 ~ 23337089 (+) True G128696
TU189935 lncRNA downstream 108315 23358451 ~ 23359557 (+) True G128699
TU189981 lncRNA downstream 534888 23785024 ~ 23787163 (+) True G128725
TU190019 lncRNA downstream 778353 24028489 ~ 24029817 (+) True G128753
TU190041 lncRNA downstream 806584 24056720 ~ 24063271 (+) True G128770
XM_043216705.1 mRNA upstream 1825 23241473 ~ 23242712 (+) True LOC122323065
XM_043264245.1 mRNA upstream 103632 23081027 ~ 23140905 (+) False tbxas1
XM_043264246.1 mRNA upstream 103632 23081084 ~ 23140905 (+) True tbxas1
XM_043263893.1 mRNA upstream 355037 22863458 ~ 22889500 (+) False fgd4a
XM_043264185.1 mRNA downstream 739 23250875 ~ 23258449 (+) True tat
XM_043264186.1 mRNA downstream 12222 23262358 ~ 23266125 (+) True zgc:56622
XM_043264187.1 mRNA downstream 21131 23271267 ~ 23276470 (+) True cotl1
XM_043216857.1 mRNA downstream 33726 23283862 ~ 23288063 (+) True meak7
XM_043264329.1 mRNA downstream 39380 23289516 ~ 23305338 (+) True plcg2
TU189495 other upstream 805858 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 837555 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2687910 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2695219 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 3156956 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 206964 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 474500 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1199629 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1333709 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1745635 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile