RNA id: XM_043264031.1


Basic Information

Item Value
RNA id XM_043264031.1
length 8888
RNA type mRNA
GC content 0.48
exon number 8
gene id hcn4
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18393603 ~ 18460809 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCCGCTCTCGCTTCTATGGCAACCCGACAGATCAGCATCACCATGAATATTCACGGGATCAGAGCGACTCGGGACGCGGCGGAAGGCGGTGATGTGGGCAACTCGATCGCGGGCGTTTGCTTGTGATTGACAGCCGACGGGGATCCTGAGGGTCCGTGACCTCCGCTCCGCGAATCTGCGATTCCTCAGACTTTATACGTGCTTCGCGGAGCAACACAGTCAGTGCCTTGAAGCTGGAGACCACTGGATCGGGCGAATTTGGGCAGCCAGGTAGCCTAATGCGCCGTGGCATGTGCTTGAGCGAAAGACAGGTGGGTTTGACCCTTCAGACTATTCGGGTTCTGGTGCACAGGGATTTGTGGCAATAATTACACCCGGACTGGATTCGTTTGTCATTGAATTGATCGCGCACCCGTTTCAATGTCATAATGGACAGGTTGCATTCGTCCATGCGTAAAAGGCTCTACAGTTTGCCACAGCACATCGGGCAGAAAGCGTCCATCATGGGTGATGCAGAAGACGCGGACAAGGACACCCGGAGGAAGAGCATCCGGATGAAGCCCCTGCCTTCGCCGACCTCCGCCGGAGCCCTCGGGGAGACCAGAAGCGGAGAGTCCGTGATCATGGAGACGGACATCGGGAGACCCGTGAAGACCAGCTCCAACGGGGACTGCCGGAGGTTCCGAGGCAGCCTTTCTTCCATCACCAGTCGGCACGTCCACGACTCGGATGTAGCGGAGGAAAGGCGCCTGATCGCGGAGGGAGAAGTCACTCCGAGCGAGGAGAGCCCTCCCGGAGCCGCTGGTGGCGGCGCGGAGCCCGGCGGCGGGGGAGAGGATGCCGCCGGTGCgagccagcagcagcagcagcagcaaccgGGCGTCCCGGATCAGCAGCCTGGCTTTATAAAGCTGGAGGGCATCGAGCAGATCCTTCCTGACGACGAGAGGTACTATCAAGCGGGCTTCATGCACAGGCAGTTCGGGGCGATGCTGCAGCCCGGGGTCAACAAGTTTTCCCTGAGGATGTTTGGGAGCGAGAAGGCGGTGGAACGGGAGCAAGAACGGGTCAAATCCGCCGGCTTCTGGATTATTCACCCCTACAGTGATTTCAGGTTTTACTGGGATCTCACCATGCTGCTCCTGATGGTGGGAAATCTCATCATCATTCCCGTGGGCATCACCTTCTTCAAGGACGAGCACACGCCACCGTGGATCGTCTTCAACGTGGTTTCCGACACCTTCTTCCTCATGGACCTGGTGCTGAACTTCCGCACAGGAATTGTGAAAGAAGACAACGCAGAGATCATTCTGGACCCTCAGCAGATCAAGATCAAATATCTGCGCTCATGGTTCGTGGTGGACTTCATCTCCTCCATCCCCGTGGACTACATCTTCCTCATTGTGGAGACGCGCATCGATTCGGATTTCTACAAGACGGCGCGAGCTCTGAGGATCGTACGCTTCACCAAGATCCTCAGTCTGCTGCGTCTGCTGCGGCTCTCCAGGCTCATACGCTACATTCATCAGTGGGAGGAGATTTTTCATATGACCTACGACCTGGCCAGCGCAATGGTGCGAATCGTCAACTTGATTGGAATGATGCTGCTGCTCTGTCACTGGGACGGATGCCTGCAGTTCCTGGTGCCCATGCTGCAGGATTTCCCCGCCGACTGCTGGGTGTCCAAGAACAAGATGGTGAACGACACGTGGGGTCAGCAGTATTCTTACGCTCTCTTCAAGGCCATGAGCCACATGCTGTGTATTGGATATGGCATGTACCCACCTGTCGGCATGACAGACGTGTGGCTGACCATCCTCAGCATGATCGTGGGTGCGACCTGCTATGCCATGTTTGTCGGCCACGCCACGGCGCTCATCCAGTCTCTGGACTCCTCGCGCAGGCAATATCAGGAGAAGTACAAACAGGTGGAGCAGTACATGTCCTTCCATAAGCTGCCGGCAGACATGAGACAGAGGATCCACGATTACTATGAGCACAGATACCAGGGGAAGATGTTTGATGAAGAGAGCATTCTGGGAGAACTGAATGAGCCACTGAGAGAGGAGATCATAAACTTCAACTGTCGGAAGCTGGTGGCGTCTATGCCACTGTTCGCCAACGCAGACCCGAATTTTGTGACGTCGATGCTCACTAAACTTCGCTTCGAGGTCTTCCAGCCTGGAGATTACATCATACGAGAAGGAACCATCGGCAAGAAGATGTACTTCATCCAGCACGGCGTGGTGAGCGTCCTGACCAAAGGAAACAAGGAGACCAAGCTGTCAGACGGCTCCTACTTTGGAGAGATTTGTCTGCTGACACGAGGCAGACGCACCGCCAGCGTCCGGGCCGACACATACTGCCGTCTGTACTCTCTGTCTGTGGACAACTTCAACGAGGTCCTGGAGGAGTATCCCATGATGAGGAGAGCCTTTGAGACCGTCGCTCTGGACCGTCTGGACCGCATCGGCAAGAAGAACTCCATTCTCCAGCACAAGGTCCAACATGACTTGAATTCAGGGGTTTTGAACTACCAGGAAAATGAGATCATCCAGCAGATCGTGCAGCACGATCGAGACATGGCTCACTGCGCCAACCTGATGCAGAGTCCGTCTCCACCCGCTCCTCCGTCCCCGACTCCCGTCATCTGGGCCCCCCTGATCCAAGCGCCCCTGCAAGCTGCTGCCGCCACCACATCGGTGGCTATTGCACTAACCCACCACCCCAACCTCCCCGCCACTCTCTTCCGACCCCCGGTGTCCGTTCTCGGAGCGAGAAACGAGCCGCCCAGCCGACTGAAGAGGTTTCAGACGCACGCACCGAAACCAGGAGACTCTCCATCCGGTTCGCCATCAAAGACTCGTCCGGGAGTCGACACACCGCTTCTCGCATCCCTTCGAACGCAGCACTCATCAGGAGCCACCGCTTCCAGCCAGCAAGCCGGGATTACGCCGTTTCCGTTCGGAAGCTTCTCTTCCTCGTCGGCGTCTCCGACTTCCAGCACCGCACAGCTCCATTCGCAGCCAAGGCAGAAGCGAGCCGGCACTCCTCCGCAAGCGGGAATTCCGACTGGGATCTTGGCTACGACCTCGTCGAACGCCAGCCCTCTTTCCGCAGGCTTCTTCAGTCACGCACCCAGTCAGCCGCTGCACGGCCAACCCCCGCCGAAACCTTCCCTGCAGCAGTTCGCTACCGGAGGGGGCAAGACTTCCACCGGGTCGAACCTCTACCGCACACCCCCGCCCGGATCCCCTGCCTCCAGCCGTTCCCAAGCCCCCGAGACTTCCACGTCATCCCAGGTTCCGCCCATTTTATCCACTTACCTACCTTTGGAAAGGTCAGCGCTGGCCTCGCTAGCTCAGTACGGCTCAGCGAATGCCTCGCCATGCTACACCCCTCTCGCCCCGAGTCCGACAGTCCAGAGCCCCGTCACGGGGAGAACTTTCCACTACAGTGACCCTTCCAGCGCCGCCGGCTCCCACTCCTCCCTGCTCCTCCCGCAGTCCTCCTGCCCCGGCCAGCTCCCGGGTCACCACTCATCCGGCACAGACTCTCCGCTGGGCCGCTTTTATGAGGATTTGAACATACTTTCCAGCTCCCATCCCGTGGAGGCAGCGGGTCAGTCTTCCCCTCGGGAGCCCGGTTACTGCCTCTCGCCGTATTCGTCCCCGACGCTCACCCCAAAACCCTGTAGCTCGGTATCAGGGCACATGGCCGGCCCGGTACAGACTTCACCGGGCTCTCGAGGCCGAGCTCGTTCTATAGGGACGTCACCTGCACTTTCTTTCCCGCACGCGACGGACGGACACCCGTCCGAACTAGAACCGCTCCGTTCGAAGCTCCCTTCCAATTTGTGAGGCTAAATCACACCCTCCTAACTCAGTACTAGCGATCTTCCTCCGTGTGGCATTTGACGTTTTCTTTCATTATCTCTGTATCGGCACTGTGTTTTAatcttaatcatttttaaatatctaaatattcctgtgatttaaaagaaatgaggtTAACTTAGAGCTTTagatttctctttcattttgcTTTGGTATCCTCCTTTTTCattcatgaatatatatatatatatatatatggaattatatatttaaatatatgttaatcaGTCTATAGGAGGGTGTGAAACGCTACATATATTGAGACTAAATAAGGacaatttagtttattttataccTATGCCAAATGCATCCGCAAGAGTTTGGTTATTAATACTGACGTGGACAGGAACCAGTGGACTCTTTTGCAGGAACCTATGCACTCACGCCTGCATATGACAACTAATTTTTGTCTGATCCAAAACACCTTTTTAGTCACCCTAATGAGGATCGCATATTGCCGATCTTGAATCTAAGGGGTTATTTAAGGGTTTGTTCATCCTGCAATGTGTTGGGACCCTTCCGAGGTGGAGAGGAGAACAtaggaaaaccaaaaaaatcccAATCAGCGTTCTCTTtagtatttctttcttttctttcagccaCACTGTAGTAATATCAGCGGGCATTGAGTGGGCGTCAGGCGAGAGTTGAAGAAACGTCCCAACTAAATCACAATTCACTTGTGTCTTCCAGGATCATACGACAGTGTAGCCCTGCagactgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgttacgtcTTGATGCAAGTGGCAATCAAGTTAGACTTACCAAGAATAGATTTGCCTTGTCACAGCAGAGAAGAAACGGAAAACCTCCCTGCAACATTTCTTGTTTGTACATAAAATAAGCCAACAACATTAGTCAAAAAGCTGCTCAAAGgtgatttagtttgtttttttctatatcTTTAGCTGCTAATCGATTAGGTGGAATGGAGGGAAGGATTCTGAATGTACCGTGTGAGTCCAAACTATGACGAACAAATCCGTTCAGGGCTGGTGATTGAAGATCTCAGCAGACCTCTGTCGCACACACCTGGGTCCCTCACAGGTCACGACTCTCAGCCACAGCTGTCTGATTTAAAAGGACAGACGGGCACATTTGGGCGACCTTTGACCCTTGTCAGCTTGAGATCAGGACAACACGATGACCAGCGTCAGACAGACAGGCTGGAATTGTAATGATGCACAAAACatgattcattttaagaaaatgaaaatgaacacacATTATTGTTTAAACGTTTGCAATCAGcaggatttttacattttttcaaagaagtctcttctgctcatcgaggctgcatttatttgataaaaaatacagtgcaaacggtgatattgtgaaatattaatacagtttaagatattgtttttattttcataagcCATTATGATTTTTCATAagctattactccagtctttagtatcacgattcttcaaaaatcatttttatattctaatattttttttttggaacctgTGATACTTTTTACAGAATTCTTAGCtgaataaaaagttacaaatcttttgtaacaatataaaaatctttattactTTAGATcaattctttgattaataaaatgcattcatttctttaaaaaaaaaaacgaaagatCTTACTAATCCCAAACTTTTTGATTATAGCGTAACACAATATATGgtatatttttaatgactgaTCAGTAAATGGATAATTgacaagaaattattttttttcaaatgtctaGAAATGtcaatgtctgtttttatttctaacaTTCAGAAAGTCAAAATgtctacatttatatatttagtttatttatactatatatagagagagagagatagaaataATCGTTTTCCTCTCTATATAAAAGTCACTATTATTTCTAAAGGCCTGTTTGAGATTTTTCCCCTGTTCTTTCTCACCCTCAGTGTGTCGCGAAGTGAACTACAGCATTTATACACACCTGAGAGCGTCTGACCTGAAGAAAGTTCATAAGTTGTGAAAACTCCTCAACTTTTGTGAAGTGAGCGAGACGGGGGGAGAAAGGGAGACGGGAAGCACAAATGCAACGAGACACTGATGTATTGAGGAGGTGATGTGTGCTGACTGGCAGCCAGGGGCCCGGCAGGTAGGCAGGACCCCCGCGGGCCCCTCACCGTGATGAGAGGTTTGTTCGGGGAGCCTCCGCGTGtcttctgattgtttctcaGGGCTCTTAGAAGTTTCCAGAGGGGGTAGAATATTGATTGGGGAGCATttgagaaatttttttttgtgacagttacataaataaataaaaacacaaagggaACCGGAGGGAGCTGAACCTGTGCCGGCTGATGGGAAGCAGAAAGAGAAGGAATCAAGGCGAACGAGTGACTGATTAGAGAAGTGTAGCGCGAAATCCAGAGCAAAGCCATCAAACACGATACTGTCACTCCACTGAATCAGAGCCTCTTCCTGACAATCAGAATCCCAGAATCATTGGTTTTAAATGCTACTAAAATCTCTCTAGAAGATGCAAAAGCATGCATAGAAAAGAGTCTTGTCTTATCTGCTTTGAGCAACTGATGATCACTTGGTGGTGACTGCTGTTATTCATGGAACACGAGCAGAGCATTTGTGTCAGTCACTACCATTCAACTCTTAacgctcatcaaggctgcatttaattgatcaaaaatacagtaaaaacgtgAAATATTATTCGAATTTCAACTGAGTGCGTTCTTTGTGaatatgttgtaaaatgttatttattcctgtgatcaaagcagaattttcaacgtcacacgattcttcagaaatcattgctGATCTGCTCAAGAAACCGCGTCGAAATCAGTTGTGCCGCTTCATGGGTTCGTAGAAACCTTTTCAGGATCTGTGATGAAcaggaagttcaaaagagcaggatttatttgaaacaggAATCCTTTGtaacgttataaatgtctttactctcacttttgatcagttgaaCGCATCCTTGATGAATTTCAAAAAACTCGCTCACCCATACAGACAAATCAAACTGGCACGATTGAATGACGTGTTTTATGTTCTGCTTGTGTTTCACATATAAGGCCTATAGATGTTCTATAATCCATTATAATCCATTCTTTCTATCACAACTGACCACTTTCCCATGAATCTCTTTGTCCTAAAGCAACATGGGAAACTCTTTTATTGAGCGTCAAACATGTATGATTCCCTGCCGTTGCTTTCTGTGCGATTCAGGGACATATTTACAGACGCAGCAGGAAGTCGAATCTGGACATGATCCACCTGGCACCAAGCAACGCTTCGGTTTGTCTGCCAGTTTTTATAACACAATTCTAATTCCATTTGGGAGCGTTCCCAATTCTGACAGCTAATCTTACGCCGGCTCCGTTTGCTTTGTGCCGTGAAGGAGCCCCCGCGAAACGGCTCTGCAAGACGGTAATAAAATCAATGGCAGTGATTGAGGATTAGATTTCACACTTACCAAGACGCGTGGAGAAAAGGATGCGGTGCTTTGACTGGCACCATCATCTCTAATTCATGCCTACAGATGTGTTCTGGGAGTCTCTGCGGTGGGACGTGTGTCAAACAGGCAGCGTTCAAACTCACACGGGTCACGGGGGTTCATGACCCGGACAGAACCAGAGAGCGGTACATTACCGTTATGTACCTGACAGGGAATCACGGAATAGTTGACGTGAGAACCAGCCTCACGCAAGACTTTGATTCTTggtcagatttggagaaacgtagcaCTGCATCGTTTGTTCACCgacggatcctctgcagtgaatgggtgccgtcagaaccaGAGTCTAAAAGGCAAAAGATGCATGTCAGAAACAAATCTATAAAAGGTTTTTAACCTAAAACCATTGAGTCCGTAGTCCATGCTTCCTCATGTGAATCAGGAAAGAAATAAGTAGATATCAAGTACTGTTTATAAGCCGAAACGGCTGGGAACAAATATGTGGGCTGATTTTGATGCAAGAGAAAGAACAGGATATGgattttttcactggaggaagcatattatggatttttgtatGTAGCTATAAAATCAAAACGAACGTTCTTTtttacaaacacgcagcttttgtCTTGACAGAATGTTAACTGAtagactggagtgctgtggattatccagatgtttttaacagctgtttggactctcattctgacggcacccattcactgcagaggatctaccGGTGAGCAAGTAATGCAACATTTCTCTAAAACCCATCCATCTGGCTTGGCCTGAGGGTGGGTAAATTGTGAGCAGAAAAAAGCGTTTTTGGGTGCACCATTCCTTTCAGCGGCAGTGTTGTTGGTTTCTCTAGATCAAATGTAGCCAATTTTTACAGGGTGACAAACTCTGTCTGGACGGTGGAATGAAGTTCAACTGTTACATTTAGAATTGAAATGCTTCATTTTGAGGCAGACATGCCTGGCTGAAGGAcacgtgttttattttttgtttcgttttttaaGAGGGCTCAGTTAGTATTTTTTCCACAGCACTGTTTGAACCCACCTCACTGTGTGTTTATAAAACGatgatattatttattcctCTGCGTTTCTTTTGGCGTTCCTGACATGGTTTGTGACATTCACCAAATCATTTGATGTTTCTTCCTCTGATCTCTGGTTATTCCATTTGACAGCGTCATGTTAATGCACCGGAAATTTCACCAAGTCACTGAAATACACTTTAGCACTTTCTTCAGGACAATAATGAAGACACAACGCTTGAACTGAGAGACCGATCGGATCAATCAGAGAATGTCAATCTATTGAtcagttttttggggtttttgttCCTATGAAATCTATAAACCTGGGGAAACAGCAATAAGCGTGATGTGAGCGTCAGACGTGTTGGGGATGACTCTGTTCACCTGCGGTTCAGGACCAATCAGAACCTGGATGGACAATAAGCACACGAACTGGATATTATtaagaaaaga

Function

GO: NA

KEGG:

id description
K04957 HCN4; hyperpolarization activated cyclic nucleotide-gated potassium channel 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188151 lncRNA upstream 41500 18351740 ~ 18352103 (+) True G127413
TU187939 lncRNA upstream 412262 17977675 ~ 17981341 (+) True G127268
TU187928 lncRNA upstream 419101 17972550 ~ 17974502 (+) True G127263
TU187874 lncRNA upstream 459784 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA upstream 459784 17929468 ~ 17933819 (+) False G127233
TU188170 lncRNA downstream 25048 18485857 ~ 18487271 (+) True G127431
TU188173 lncRNA downstream 31188 18491997 ~ 18518461 (+) True G127434
TU188180 lncRNA downstream 41632 18502441 ~ 18546723 (+) True G127439
TU188185 lncRNA downstream 66320 18527129 ~ 18528132 (+) True G127443
TU188186 lncRNA downstream 66320 18527129 ~ 18528342 (+) False G127443
XM_043264106.1 mRNA upstream 6673 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA upstream 6673 18339200 ~ 18386930 (+) False LOC122362573
XM_043264105.1 mRNA upstream 6673 18348667 ~ 18386930 (+) False LOC122362573
XM_043264104.1 mRNA upstream 49746 18339143 ~ 18343857 (+) True ugt5f1
XM_043264985.1 mRNA upstream 59121 18277364 ~ 18334482 (+) True pepd
XM_043216920.1 mRNA downstream 59182 18519991 ~ 18523564 (+) True aqp11
XM_043264715.1 mRNA downstream 83554 18544363 ~ 18546307 (+) True aamdc
XM_043216726.1 mRNA downstream 185553 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA downstream 187763 18648572 ~ 18652164 (+) False LOC122323076
XM_043216730.1 mRNA downstream 193809 18654618 ~ 18658740 (+) False LOC122323077
TU187968 other upstream 253350 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 465438 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 465438 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 506392 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 581436 17808674 ~ 17812167 (+) False G127239
TU188207 other downstream 99557 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 99557 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 316959 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 316959 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1542195 20003004 ~ 20013786 (+) False wdr59

Expression Profile