RNA id: XM_043264087.1


Basic Information

Item Value
RNA id XM_043264087.1
length 3255
RNA type mRNA
GC content 0.47
exon number 13
gene id cry1b
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24277282 ~ 24286775 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGTAGGCGGAGTCGCCTAATGGCTGACGGTTCACGGGGTGAATTAAAATTGACATTCAACTAAAGGATAACAATTGTGTGAATATCCACCGCTAATCGACGCTTGTGCCGTCGCACGGACAGAGAACGCGTGCTTGCGTGTGGATTTAAcctgaaaatgcaaatatttaacgTTTCAGGAAGAAGTTAAAcggctgctgttgttttttttttctttctgtcttcgCGAGTCCACGTTGACGTTCGCGTGTTTTCATTGTTGGGGTTTTCTCGTGCTTGTTTTAATATCAGTCCGCCAGTTTTACGCTCCGTGGTGCGTGCTTCGGTCTGAAGGCTCTGTAAACTCGCTAATGCACGCGCATCGCGTCAATCACGGGGCGTGTGGAGCAGCTATATGAATTTTAGCTTTGCGGTTCAGCAGGCACGAGCGCGGAGATACAGCTTCAACATGACAAAAGTTTTTCTCGAGCAGGGTTGAAGAAGACGTGACCAGATCAGACTTTACACCTCAATCGAGAAGTCCGGGTTTTCCAAGTTTTTGTTTCGGGAGCATTCGTGATCTCGGAAGGGACCGCGGTACATTAGGAGTAATGGTGGTCAATACGATCCACTGGTTCAGGAAGGGCTTAAGGCTCCACGATAACCCATCTCTGCGGGACTCTATAATAAGAGCCGATACTCTGAGATGCGTTTACATACTGGACCCCTGGTTTGCAGGATCGTCCAACGTGGGAATCAGCAGATGGAGGTTTTTGCTGCAGTGTCTCGAGGACTTGGACGCCAGCCTTCGCAAACTTAACTCTCGCCTCTTCGTCATCAGGGGACAACCCACGGATGTCTTTCCAAGACTTTTCAAGGAGTGGAAAATCACCCGGCTGTCATATGAGTATGACTCCGAGCCCTTCGGGAAGGATCGTGATGCCGCCATAAAAAAGCTGGCCACTGAGGCAGGGGTGGAAGTCTTCGTCAGGATCTCCCACACACTCTATGATCTGGACAAGATCATAGAGTTAAATGGAGGACAGTCTCCTCTCACCTATAAACGATTTCAGACGCTCATCAGTAGAATGGATGCTGTGGAAATATCACCGGAGACCATCACAGCTGAAGTCATGGGCAGATGCGCCACACCGGTCACCGATGACCACGATGACAAGTTTGGTGTACCCTCTCTTGAAGAGCTTGGTTTTGAAACCGATGGGCTGTCCTCAGCTGTGTGGCCTGGTGGAGAGACTGAAGCTCTGACTCGACTAGAGAGACACCTGGAGAGGAAGGCTTGGGTGGCTAATTTCGAACGTCCCAGAATGAATGCTAATTCCCTGCTGGCCAGCCCCACAGGCCTGAGCCCTTACCTCCGGTTTGGCTGCCTCTCCTGCAGACTTTTCTATTTCAAACTCACAGACCTCTACAGAAAGGTTAAGAAAAACAGCGTCCCACCATTATCCCTTTACGGTCAGCTGCTCTGGCGCGAGTTCTTCTACACGGCTGCCACTACCAACCCACACTTCGACAAAATGGAGTACAATCCCATCTGCGTGCAGATCCCGTGGGACAGGAACCCCGAAGCTCTGGCGAAGTGGGCAGAGGGCCGGACTGGCTTCCCGTGGATCGATGCCATAATGACCCAGCTGAGGCAGGAGGGTTGGATCCACCATCTGGCCAGGCATGCTGTCGCTTGCTTCCTCACTCGTGGAGACCTGTGGATCAGCTGGGAAGAGGGCATGAAGGTGTTTGAGGAGTTGTTGCTGGATGCAGACTGGAGTGTCAATGCTGGTAGCTGGATGTGGCTTTCATGCAGCTCATTCTTCCAGCAGTTCTTTCACTGTTACTGTCCGGTGGGCTTTGGTCGACGTACTGACCCTAATGGAGACTACATAAGacgCTATTTGCCCATATTGAGGGGCTTTCCTGCCAAATTCATCTATGACCCTTGGAATGCCCCAGAAAGTGTTCAGAAGATCTCAAAGTGCATAATCGGAGTGCACTACCCTAAAcccatgattaatcacattgaGGCCAGCAGGATAAACATCGAGCGAATGAAGCAGATTTACCAGCAGCTTTCCTGCTACCGGGGCCTCGGGCTCCTTGCAACTGTTCCATCCAACACAACCAACAATGGAGATGTTAACGGAGCAGGTCCTTTAGGAGACAACACACAGGAGAGCACTCATATTACAGTGAACCCATCACCAGCAACTTCTCAGCCAGAGTTCTCACCATTTCCAGTGTCATATGATCAGCAGTCTGGAAATACTGTGCAGCCACAAGCAGGTTACTCGGGTAGTGGACAAGCTCACAAACAGTCACAGAGAGGGAGAGGGACAAAAACTTTGAAACGACATAATGACGACAGAGCATCAGAAGGTGCATCGAAGATTCAGAGGCATGAAAGTAACTAGCCGTCTCGGAAGCAAGCATTTACATGCACCCCTTCTCACGACTAGTGCTTGGACCCGTCCTGAACTGTACCACGCAAGACAACATCTCCACATGCCATATCTACTCCTCCATGCTTAGCTTTTCCCTTTATGCTTTGCCTTGATGTTATTCTGCTTGTAGAGTTTGAGGTAGCATTGAGGTCAAACATGGTGGCCCAGGAAACCGTAAACTAAGCTGTTTGGCATGATGATGTAGTTACAGCATTTAAGATGTCTACATTTTTGAAAGCTGTATATTGATATATTGTGGAGGAAAATGTTTTGTAGTATTCGTGCAATCTGAAAGTCAGTCATCAGTTTGTCTCGgaaagtgtgtgtatgtctggCATCCCATTTGATGTCCATTTGTGCAATGTtggtttttttggaaataacTGCTATGTAATAAGAAGGATTTATTTGGAAATGCATAATCTTATTAGCGATAACAGAGAGCATACTACTGGCCATTAATTGAGAATCGTAAATTCTTTCAAATCTAAATGTTCAATTCCAATTCATAAATAGACccattaaaatgtctaaagtcCAGAGCAAAAGTATGTATATTAAGTTTGCCTTTTGTAATGGAGTAACTATCATTGAAGCCTGTGGCTCTTTAGCACAAGTGGATTTGTTTAGAAGCATTTACAGAGAAACAAAGCCTACTATGTAAATAAGCATATACTGTAAGTAATTTAGTCTACAAACCATTGTAcataacttttgtttttcttatttacagacttgctgttatattttttatatgagaGACAATACCTTTTTTGAATGTTGTAAATCACCATTAAAACATGATAGACCTGTTGCAGTGA

Function

GO:

id name namespace
GO:0009649 entrainment of circadian clock biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009416 response to light stimulus biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003913 DNA photolyase activity molecular_function
GO:0005515 protein binding molecular_function

KEGG:

id description
K02295 CRY; cryptochrome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190043 lncRNA upstream 211179 24058353 ~ 24066103 (+) True G128772
TU190041 lncRNA upstream 214011 24056720 ~ 24063271 (+) True G128770
TU190019 lncRNA upstream 247465 24028489 ~ 24029817 (+) True G128753
TU189981 lncRNA upstream 490119 23785024 ~ 23787163 (+) True G128725
TU189935 lncRNA upstream 917725 23358451 ~ 23359557 (+) True G128699
TU190086 lncRNA downstream 10334 24297109 ~ 24297333 (+) True G128803
TU190087 lncRNA downstream 10834 24297609 ~ 24297845 (+) True G128804
TU190109 lncRNA downstream 58425 24345200 ~ 24382712 (+) False G128816
TU190110 lncRNA downstream 74523 24361298 ~ 24382712 (+) False G128816
TU190108 lncRNA downstream 95365 24382140 ~ 24382712 (+) True G128816
XM_043264330.1 mRNA upstream 95740 24134413 ~ 24181542 (+) True LOC122362775
XM_043265046.1 mRNA upstream 307223 23963028 ~ 23970059 (+) True uri1
XM_043263939.1 mRNA upstream 316259 23958161 ~ 23961023 (+) False spata2l
XM_043263938.1 mRNA upstream 316259 23958510 ~ 23961023 (+) True spata2l
XM_043265074.1 mRNA upstream 325071 23937000 ~ 23952211 (+) True vps9d1
XM_043264094.1 mRNA downstream 363 24287138 ~ 24291459 (+) True zgc:153031
XM_043216488.1 mRNA downstream 21401 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264268.1 mRNA downstream 52116 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043264269.1 mRNA downstream 56149 24342924 ~ 24350157 (+) False si:dkey-103i16.6
XM_043264074.1 mRNA downstream 174141 24460916 ~ 24472951 (+) True slc17a8
TU189952 other upstream 540436 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 697480 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1838603 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1870300 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3720655 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 162990 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 297070 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 708996 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1007968 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1007968 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile