RNA id: XM_043264094.1


Basic Information

Item Value
RNA id XM_043264094.1
length 2550
RNA type mRNA
GC content 0.39
exon number 6
gene id zgc:153031
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24287138 ~ 24291459 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCATTGGAAGTCACATGGTGAACCAAGCAGATGTTTTAAAGCTCCATAATCTAACGGGTTGAGGTCGAGAAGGATGCGAACGTCTCATTCTAAACCAACTGGACGACTGTAGCCTAGTTTGTATCATAAACCAGATAAGCTGCTCTTAACGAAAGCCGTAAACTATGAACATCGAGGGGGAGGAGATGCGCAAACCAATCCGGCTCATCGCGGCTGCCTGCAGAGACATGGGCATAGGAAAGAACGGACAGCTTCCCTGGAGTCTTCCAAAAGAATTTCAGTTCTTTCTGGATACAATTACTGCTGTGTCGGTACCTGGAAAGAAGAATCTACTTGTTTGGGGGCGAACCTCCTGGTTTTCCTGCCCTGAAACAGCCTTCCCTTTGGCCAACTGCTTAAATTTGGTATTGAGCAAAAAAATGACTGCAGTGCCTCCACGTGCCCACTATCTGTGTAAGGATTTCGGGTCAGTAATTCACATGGCTTCTAAGCCTCCTTTATGTCAGACTGTGGAGACCATCTGGATTTTAGGAGGTCCAGAGGTATATAAGGAAAGTCTTGAGCACCCATGGTGTGATCTCATCTATCTCACCGACATCATGGCCAACTTTGACTGCAATGTCTTTTTCCCTAAATTCGACcgcaatgttttcaaaaaacaaaacagCTTTCCTGGAGTACCAGATGAAATTCATGAAGAAAATGGtattaaatttcaatttcaagtaTTCAAGAAAGAAGCTTTAAACTGAAGCCAGGAGGAGACAAGACTGTCAAAGAccatactaaaataattttatttttacataatctgAAACTACGGAGCCACTATGGGATGggagaaaatatgtattttttcgCCAATGTCCCCTAGAAAGTTTAAGATTCTTTCCGCATATATTGTgttcatctttaaaatgttaGCAAAAGTCTTAGGTTCCCCAAAAGATATTGCAAACATTGCATTACCTCTGCATTCTTTAACAAAAGTATTGCATTCATCTGAGAATTTTTGCCCTTTCTCGCAAAACGATGcttgaaaatatttagcagtcactcaaaaaacatttgcatttcctCGCAGAAGTATTGCGTTTTCTTGGACATTTTTTGTTCTCCTACAAAAAATTGCGTTCCCCTGAGACATTTTGCATTCTCTTGCAAAAGTATTGCGTTCATTTTGAGGTTTTTTGCAGAAGTATTCTTGGCCCAAAATATTGCATTCCGTATTGCACTCTCTAGCAAAAGTACTGCAGTATTCCTGAGACATTCTGCTTTCTTTCGCACAACATTTTGTTCCCCTGAGAAACTTAGCATTTTTGCAAACTTTACAGCTTTGCGAACTTTACACAGAGCCATTGAGCATTCTGTGCAGGTTTGTGGCATCTTTTGAATACACGTTGCTTACTATGGTAAATCACGTCAAGTTGACCATTACAATATGTGTCATAGACATACATTGGACTGCAGGCACGGAGAcatgttggaacagtgaacctAATGTCAGTCAGCATACTATAGATTCACACAGAGCCGTTGTGTGCAGGATTATGGCTTCTTCTCGTATATTCATTGATTTCTATAGTGAATGAAGTCAGACCGCTACAATATGGCGGACGGCTTATGTATCACAGCTCATAGAAACAGTCTATGTATGCTTATCTATGTTATATATAGCAGCCCATAGGAACGGTCACCATTGAAGCATCAATGTATACATACCTATGACGCAAACATCCttcaatatagaaatcctggtcAGGAAAAAGTCACGTATGGTCACCTTAGCCCAGAGCTGGAAAAGAGAACCAGTACTGTAGGGCAGGGATGCCCAATTCCGTTTCTGAAGATCTACAAAGTTCAGTGCAAAACCTGCTCTAACACACCTGTCTGTAATTATCCAATGTTCTTGGAGATCTTAATTAGCCTGTTCATGTGTGCTTGATTAGGTTTGGAGCTGAGCTTTGCAGGAGGGTAGATCAGGAACAGAAATGGGCACCCCTTGTatgaaacagtattttattggttttaataTAGTTGTGTCAGCTTCGTACGATATTGTACAGAAGAACACTTTATCTCATAGCTTCGGTTGGGCTCTACTGGTGGTACCTCATCACTGTCCAATTCATAAGCATTTCAAAAGAGCTagtcctgctgaaaaaaacaataaaaccctGACCAAAACACACtagaaaatgtaatggattCAATGTTTATAATGGGAAttatattggttttaatggaaactatAATACTTGTATGTGATGGATTCTATTGGCGGGAGGTTAAATCCTATTGGAAAAatgcccaaaacacactacaaaaaatacattttggttttactggaaaaagctgttttaatgtgtaaaaaagTAATGGTTCATAAgggttttttaatgtttttttattgggcttctattgttttagtttttttagcagGGAGTTCATACAAgaccttttttatatattaaataacaaatcaCACCACACATGACCTGGAACAGCAAATGGATACAGACAATGCTGCCAGTGATGAGCATCACTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0006545 glycine biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0004146 dihydrofolate reductase activity molecular_function

KEGG:

id description
K00287 DHFR, folA; dihydrofolate reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190043 lncRNA upstream 221035 24058353 ~ 24066103 (+) True G128772
TU190041 lncRNA upstream 223867 24056720 ~ 24063271 (+) True G128770
TU190019 lncRNA upstream 257321 24028489 ~ 24029817 (+) True G128753
TU189981 lncRNA upstream 499975 23785024 ~ 23787163 (+) True G128725
TU189935 lncRNA upstream 927581 23358451 ~ 23359557 (+) True G128699
TU190086 lncRNA downstream 5650 24297109 ~ 24297333 (+) True G128803
TU190087 lncRNA downstream 6150 24297609 ~ 24297845 (+) True G128804
TU190109 lncRNA downstream 53741 24345200 ~ 24382712 (+) False G128816
TU190110 lncRNA downstream 69839 24361298 ~ 24382712 (+) False G128816
TU190108 lncRNA downstream 90681 24382140 ~ 24382712 (+) True G128816
XM_043264087.1 mRNA upstream 363 24277282 ~ 24286775 (+) True cry1b
XM_043264330.1 mRNA upstream 105596 24134413 ~ 24181542 (+) True LOC122362775
XM_043265046.1 mRNA upstream 317079 23963028 ~ 23970059 (+) True uri1
XM_043263939.1 mRNA upstream 326115 23958161 ~ 23961023 (+) False spata2l
XM_043263938.1 mRNA upstream 326115 23958510 ~ 23961023 (+) True spata2l
XM_043216488.1 mRNA downstream 16717 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264268.1 mRNA downstream 47432 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043264269.1 mRNA downstream 51465 24342924 ~ 24350157 (+) False si:dkey-103i16.6
XM_043264074.1 mRNA downstream 169457 24460916 ~ 24472951 (+) True slc17a8
XM_043216759.1 mRNA downstream 182778 24474237 ~ 24488921 (+) False nr1h4
TU189952 other upstream 550292 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 707336 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1848459 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1880156 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3730511 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 158306 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 292386 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 704312 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1003284 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1003284 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile