RNA id: XM_043264099.1


Basic Information

Item Value
RNA id XM_043264099.1
length 1692
RNA type mRNA
GC content 0.44
exon number 11
gene id cers3b
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20532906 ~ 20538618 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTTGGGGGGTTGAGGTATgcagtgaaagtgtgtgtgtgtgaaagagagagagagtgagttcGCTACCTAGCGGATTCATCAGGACTGGGCACAACTCTGGAGGATCTACTATAAGGTGTGTGTGCACAGAATTACAACAGAGAAAGCAGGAAAACAGGAGGACAAAGAAGAAAAGGACAAATCTGggCGATGCTTAGTGAGTGGTTTTGGTGGGATCGGCTGTGGTTGCCGAGGCCGGTGACGTGGGCGGACCTACAGGACAGTGAGGGGCGTGTCTACGCCCGTGCGTCCCATTTGTACATCATTTTACCTGTAGCAGTCCTGCTGCTAGGCTTAAGAGCTTTCTATgaaagACTGATCGCAGTGCCACTCGCTCAGGCTCTCAGGGTTAAAGACAAAATTCGCAAGAGAGCGTCACACAACCCTGTACTtgaaaaatactacaaaacacATTCTAAACATGCAAAACAGGCAGATATAAAAGGTGTGTGTAAAAAGTTGGGCTGGTCGGAGAGGCAGGTGGAGCGCTGGTTCCGCAGACGGAGGAACCAAGACAGACCCGGAGTACTGAAGAAATTCAAAGAAGCCAgTTGGCGGTTTGCCTTTTATCTGTGTTCTTCTTTCGGAGGAGTGCTGGCTTTACATGATAAAGCATGGTTTTATGATCTACGGGAAGTGTGGGCAGGATTTCCCAAAcagtcaCTGCTGGATTCTCAGTACTGCTATTACATCACTGAGATGAGTTTTTATGGTTCTTTACTGTTCAGTGTGGCTGCAGATGTAAAACGTAAGGACTTTAAGGAGCAGTTGGTCCATCACTGGGCCACACTAACGCTGTTGTCCTTCTCCTGGTGTGCCAACTACATCCGCATTGGCACACTGGTTATGCTGGTGCATGACACATCCGATGTCCTGCTCGAGTCTGCTAAGATGTTTAACTATGCTGGATGGGAGACAACCTGCAACAGTATCTTTGTGGTGTTCGCGCTGGTCTTCATGGTAACCCGACtcattatttttcctttctggctGATCCACTGTACGTGGGTGTATCCTCTGGACCAGTTCGAACCTTTTTTCGGCTATTATTTCTTTAACGTCATGCTTGTGGTTCTGCTGTTATTGCACATGTTCTGGGCTTCCCTGATCCTCCGCATGGtcaaaaagtttctttttgGCAAAcTGAAGGGCGACGAGCGAAGcgatgaagaggaggatgagggtTCTGAGGAAGACTACACATACACCTACTCTAATGGATCTGGGAACGGACTCTCTAATGGCCATTTACACAGAGAGAGCCCTTCCACAAATGGACACAAATAGCCTCATGATgccatgcatgcatatatgtcCATATTGGACGCATGATTCATctgtgaattttcttttttacacagCCTTTCATATTAAGGTTTGTATATGTACAGATATTATGATAGATAGAATAAATCAGTACAAATTGTTATTCAAGTTAACAGTGGTTTATGTTATGAATTAAAACTTGTTAGCATGTGCCAGTCCAATATGAAGTCTCTTCTCATCAAGGCTGCTTAGTTTTGaccagaaatacagtaaaattgtgaaatatgaatccatttataatgttatttattcctgtggagaaaagctgaattgtcagcatcattactcatcatcttcaatgtcacatgatccttcagaaatcat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188708 lncRNA upstream 149148 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA upstream 157071 20373854 ~ 20375835 (+) True G127800
TU188698 lncRNA upstream 251611 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 308322 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 317675 20202748 ~ 20215231 (+) False G127766
TU188810 lncRNA downstream 23465 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 47433 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 58589 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 101398 20640016 ~ 20641059 (+) False LOC122362661
XR_006253183.1 lncRNA downstream 103147 20641765 ~ 20647639 (+) True LOC122363025
XM_043216714.1 mRNA upstream 1327 20506031 ~ 20531579 (+) True LOC122323072
XM_043216717.1 mRNA upstream 1327 20506031 ~ 20531579 (+) False LOC122323072
XM_043216716.1 mRNA upstream 1327 20506031 ~ 20531579 (+) False LOC122323072
XM_043216718.1 mRNA upstream 1327 20506031 ~ 20531579 (+) False LOC122323072
XM_043264827.1 mRNA upstream 28532 20471101 ~ 20504374 (+) False vwf
XM_043263997.1 mRNA downstream 7374 20545992 ~ 20549357 (+) True glipr1b
XM_043216579.1 mRNA downstream 12530 20551148 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216582.1 mRNA downstream 12540 20551158 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216580.1 mRNA downstream 12555 20551173 ~ 20556627 (+) True si:dkey-30c15.17
XM_043264151.1 mRNA downstream 23217 20561835 ~ 20565306 (+) True syt1b
TU188630 other upstream 445325 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 519120 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1691371 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1750747 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1971296 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 9209 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 12530 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 1862356 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1896188 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2918482 23457100 ~ 23579802 (+) False cdh13

Expression Profile