RNA id: XM_043264106.1


Basic Information

Item Value
RNA id XM_043264106.1
length 3962
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC122362573
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18339199 ~ 18386930 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCAATATTCACTTGGATCATTAACGAGAAGAAAGTGTGCTTGCTTTTGAATTGCTGCTggagatgaggatgaggatgatgggCCATCATTGCTTCATTTTTGATTCGTAATATACATTGCTAAAGATTTCATTTGGATAactttttaaagatttcatttgattttctgcaccctcagattccagttTGGTATCCTGAGCAAATATTGTCGTTTCCTAACAAACCTTGCATTTATGCAAAGCTTATTTACtcagctttcagatgacgtAGGAATCTCAATTTTGCATTATGCTTTTGATATCGCAATATTTTATGTAACGCAACAATGCTTCGTTTCAAACTGAAACCGAATGGTTGCAGAGGAAGCAAGAAATAATGTGTGCGCAGTTTAGAAAGCGTCTCTGTCGCTGatccagcaggtggcgctgtgTGAATGTGAGGGGAGCGGACAGAGGTCATGACAGTGCTCATGTCTCTTAATCCTGACTGACTGTGTGTTAATGACAAGCCCACGCTGTGTGGATAACATGCACTTTCTTGGAGAAAATCTCCAGTGCCCTAGATAAGCCCCCGAGACAAAAAACCTCCCTGATTTTACATGCATGCTGCCAGTGACATGTGCTATTTGGAGTAGCATGTAAAAGCATTGCATGTGGTATACTTTCGTGGTATATGGAGGTAGGGGTTAGTTGTCACAGACGCTAGATCTCAGTCCAAGCAGTGCTTCCCTTAGTtacaaaccttaaaaataatttattaaatgcatgacattatctattttattcattgtaaatTCTGCCCTTTAAACTAAAACTCAgatatcatatttttgtgattaattgttgGGTAAGACAAAAACAATGGCACTGAGACAACAgtcactattaaaaaaagtattttagtacAAGTCAACGTCAGGCaagttgccttttttttttttttttttttaaataagttttcgTTTTCAAAATTCATCAGGTTTCTACTAAAAATTCAAAACGATACAATtgcattttgcttaaaaaaaatctgcatgcGTGACAGCACGCCCGATTTGAAGATAAATTCCCCCAAATCgatatttatcaaattaatttagttaaaaaacgGAGTGCAAGTCTTAAAAGGGTCGtgttttttaatccaaaaaacaCGGATGAAATGGAATTGGAATAGAGAGCGATGGTTTCAGGTGTCTCTATATAAActcttttatttcactttattttcacTGCGAAGTTACGTCGCCTGCGCGGCCTCTGCGCAGAGCTGACGCGCTCGAGGCCCCCCCTCCCCGTGAGCGCGCGCGCGCCGACAGCTGATGATGCGCGCGAATGAGCCGAGGGGTGCGCGCACTGACAGCTGAAGGTTCTCCGCGATGACGGACACTCCGATGGCCCATCATCCTCCTCATCGTCCTCatctccagcagcagcagcatcagcaTCCGCATCCCTGAGCTCCGGACAGCCTCGGCGTCACCCTCATCCTCATCCGTCCTCCATGCAGCAGAGCCGCCGCGCAGCGCCTGTCGCGTTTCTCGCCGTCCGTCCGCGCACCTCCTCCGCCATCCTCTGCGTCTGAAGCCGCTCCGCGTCCCGTCACCCGCTCGCCGCGTCCCGTCTCCATCCTCCCGCAGGATGCCGTCCTACGCCGGGATGCTCGCGCTGCTCCTCGCGACGCTCCCGTACGTATCATCTCAGAACGcTGGGTTTGTGAAGTCGCCAATGTCAGAGACAAAGCTCACAGGAGACGCCTTTGAGCTGTACTGCGACGTGGTGGGTAACCCCGTGCCGGAGATCCAGTGGTGGTACGCCGATATTAACCGGGCGGACTCCTTCAAGCAGCTGTGGGACGGCGCCCGCAAGCGACGGGTGTCCATCAACACGGCGTACGGAGCCAACGGCGTGAGCGTGCTGGCCATCTCCCGCCTCACGCTGGAGGACGCCGGGATCTACGAGTGCCGGGCCAGCAACGACCCGCGCCGCAACGACCTTCGCCAAAACCCGGCCATCACCTGGATCCGAACGCAAGCCACCATAGCCGTGCTGCAGAAGCCGCGAATCAATGCTTCCGATCAGGAGATTTTGCAGCCTAAAAGCGGGCAGGAGTTGCCCATCACCCTTCAGTGTAACCTCACTAACTCACACAGCACCCACCGGGACACCTTCTGGATGAAGAACGGACAGGAGATCGCCAACACGAGGACGGAGCGCAAACACACCGAGTTCAAGTTAAGTAAACCGAGGACGGACGATTCGGGTGAATACATGTGCGTCTACACCTTTAAGTCTGCTCCCAACGCCAACGCTTCCATTGAGGTCAAAGCTGCTCCTGAAATCATCGGCCACAAACGAAGCGAGAACAAaaaagaaggtgaaaatgccacGCTGTACTGCAAATCAGTGGGATACCCTCATCCTATGTGGATGTGGCGCAAGAAAGTTGGTCGGGGATCTTACATTGACATCGACAACAGCACCGGCCGCTTCTTCATCATCAACAAAGACAACTTCACGGAGCTGAGTATCATCGGTCTGGACATCGGCACAGACCCGGGCGAGTACGTCTGCAACGCCTCCAACATCATCGGCTCCAAAGAGTCCATGACCATCCTGAGGGTGCGGAGTCACCTCGCCCCGCTGTGGCCTTTCCTGGGCGTCCTGGCCGAGATCATCATCCTCGTGGTCATCATTGTGGTTTACGAGAAGCGCAAGAGGCCGGACGAGGTTCCAGATGTTGCACCAGTAAAAACGAACTCCACGAACAACCACAAAGACAAAAACGTGCGACAGCGGAACACCAACTGAGCCCACGGACCAACGTAGAAGAAAGCTGAAGATGACCAACTGCATATCCTGACCATACGGACGTATCCGAGGAGAGGAGACGCTCCTGGCGATTTTCAGCGACGCATATCCTGCCTCACGTggagaagaaaacaacaataacgACAGCATTACACTGGCAGAAACGAACAATAAAGACTGTCTTAAGTTTGCCTTATTCAGGCTCTGTGTGAATGTGGATGCTGACTGAATCGTTCTGAAGGTGATGACGATGAAGATGATTTTACTACATGTGCTGTTAAACGTTGCGTTTCGTTCTTTTATCATGCCCTCCTGCTGCactaattttttttcatatctacATGTCGTCTCGAATGCATGCAATAACATAATCGAATAAGATTCAGATATCGTTTTTCTATTGTTACTTTAAGTGGCGTTGCATCCAAATGAATAgccagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagagagagaaagagtatatcagcgtgtgtgtgtgtgtgtgtttttaaagaaatttaaatggataaaaaaaagttaaggaATCATTGAGATCTTTGTACAGTTTATCATCcaataaaacaatactaaaaGGAGGTGTTTTGTCTTAAACTAGAATGCAAGATCCTTTGTGAGTGGCAGAACAGTATTTAATCTTAAAGCTGatattgtattaaatgaaatggatacatgtaacatttattttttagagttATTTAGACGTCTTGTACATGTGGTGCTGTAAGTGTTCGAATATTACGATAGCATctgtaaaaaggaaaagaatatatctttttttttttttttttttttgtaaatgtcctgTTTCTTTTTAGAGAAAAGATGAATCTTGTACAGCATGGCTATAATCCTATGCAATATGTATTCATATAGACCTACGGAAAATTGTAAGGTGGGGTGGGTTTGTTTAATTTCAGagaataaaaaagctttaacGGGACAGAGATAAGGGTGCTTCGCATTTGAAATGCACTGCTGTAGTTGCATGACAACTCTTGATCAATACAGTGTGTGTCATCATGACAACGGACCAACATTCAAGGGAGGAAGTGGGTGGAGCTAAAGCCATTACAAACTATGTGAAACCAattgtttcctttttcagaataaaGCTTCCAAAATatt

Function

GO: NA

KEGG:

id description
K22653 NPTN; neuroplastin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187939 lncRNA upstream 357858 17977675 ~ 17981341 (+) True G127268
TU187928 lncRNA upstream 364697 17972550 ~ 17974502 (+) True G127263
TU187874 lncRNA upstream 405380 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA upstream 405380 17929468 ~ 17933819 (+) False G127233
TU187898 lncRNA upstream 481050 17857012 ~ 17858149 (+) True G127243
TU188170 lncRNA downstream 98927 18485857 ~ 18487271 (+) True G127431
TU188173 lncRNA downstream 105067 18491997 ~ 18518461 (+) True G127434
TU188180 lncRNA downstream 115511 18502441 ~ 18546723 (+) True G127439
TU188185 lncRNA downstream 140199 18527129 ~ 18528132 (+) True G127443
TU188186 lncRNA downstream 140199 18527129 ~ 18528342 (+) False G127443
XM_043264985.1 mRNA upstream 4717 18277364 ~ 18334482 (+) True pepd
XM_043264208.1 mRNA upstream 268618 17983478 ~ 18070581 (+) True LOC122362666
XM_043264342.1 mRNA upstream 369738 17937084 ~ 17969461 (+) False LOC122362789
XM_043264031.1 mRNA downstream 6673 18393603 ~ 18460809 (+) True hcn4
XM_043216920.1 mRNA downstream 133061 18519991 ~ 18523564 (+) True aqp11
XM_043264715.1 mRNA downstream 157433 18544363 ~ 18546307 (+) True aamdc
XM_043216726.1 mRNA downstream 259432 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA downstream 261642 18648572 ~ 18652164 (+) False LOC122323076
TU187968 other upstream 198946 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 411034 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 411034 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 451988 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 527032 17808674 ~ 17812167 (+) False G127239
TU188207 other downstream 173436 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 173436 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 390838 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 390838 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1616074 20003004 ~ 20013786 (+) False wdr59

Expression Profile