RNA id: XM_043264151.1


Basic Information

Item Value
RNA id XM_043264151.1
length 1519
RNA type mRNA
GC content 0.44
exon number 8
gene id syt1b
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20561835 ~ 20565306 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCATGAAGGTGACGCTCTGCTGGCTGGTCCTTCCTCATCTCCAGCATCCCCTGGACAGAACGGATCAAAGATACCCGGACCTGCGAGTTCTCCACCCACGGCGGTTCATCCTCAGACCACAACCGCAGAGAGTTTGGCTCATAGCATCAGAAGCAAGTTTCTGAATGAGCTACATAAAGTCCCATTACCATCCTGGGCTCTGGTGGCCCTCGGCTTCCTCATTGTCCTCATCACACTCAGCTGCTGCCTGTGTTTCTGCAAgaagatgatatttaaaaagaaaaagggtgggaaagataaaaatgaaaagaacaacATTAACCTGTCAAACGTGAAAGAGGATGGAACAAAACAGGCTTTTCATCACGGCAATGATTCTGATCACAAGGAGGAGGATTCTGAATCTAAAGAGCCTCCAAAACTTGGAAAACTTCACTATACCCTTGACTACAACTTCACTGACAGCGCGTTAGTTGTAGGTGTGGTTGAGGCAGAAGGTCTTGCTGCTATGGATATGAGCGGCACTTCAGATCCATATGTGAAAGTCTACATCCTCcctgacaaaaagaaaaagtttgagACAAAAGTTCACCGCAAAACACTGGATCCGACTTTTAATGAGCACTTCACCTTTAAGGTTCCATACGCAGAGCTCGGAGGAAAGACGCTGGTCATGACAGTGTATGATTTCGACCGTTTCTCCAAACATGACGCTATTGGGGATGTGAGGCTGCAGATGAACAAAGTGGACTTCAGTCAGCTCACAGAGGAATGGAGAGAACTGCAGAAAGCAGAGAAAGAAGAGCATGAGCGGTTAGGTGATATTTGCTTGTCTCTGCGCTATGTACCGACTGCTGGAAAGCTGACTGTTGTCGTTCTAGAGgccaaaaacctaaaaaaaatggatgtggGTGGCCTCTCGGACCCATATGTAAAAATCCACCTGATGCAGAACGGCAAAAggctgaagaaaaagaaaaccacaaTTAAGAAGAACACGCTGAACCCGTATTACAACGAATCCTTTAGCTTTGAAGTGCCATCTGAGCAGATTCAGCAACGCCATTGGTCAGATATGTTGGCCAATCCAAGAAGACCCATCGCTCAGTGGCACGCCCTTAAACCTGAAGAGGATGTGGATGCTGAACTGATAAAGAAATGAAGCTACGCGTGTGAGCCTTTCTGGACACGCATATTCAGTGGTTGCTTTCATTTGTGaagtttgtgtatatgtgtgcatgtttgcGTACGCTTTTCTTTCAGCCACATTTATAATCAAAAGCGCATTCATTTTTGGTACCTTGTACGAAGATAAAGGAGAAAAACTGTACTGGACAACATGAGACAGCATTTACAATGCAACTGCAAGAATAACACATTCTTGATTAAAACACAATATTCATGAGGAAATTATGTAAACCAGAATCAAATCCATTGGTATTTGATTGGTGAAAAGTAGGTTATGacattattgatattatttaaataatgtccCCCAATGAATTGTGCATAAGAGc

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188708 lncRNA upstream 178077 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA upstream 186000 20373854 ~ 20375835 (+) True G127800
TU188698 lncRNA upstream 280540 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 337251 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 346604 20202748 ~ 20215231 (+) False G127766
TU188825 lncRNA downstream 20745 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 31901 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 74710 20640016 ~ 20641059 (+) False LOC122362661
XR_006253183.1 lncRNA downstream 76459 20641765 ~ 20647639 (+) True LOC122363025
TU188846 lncRNA downstream 76500 20641806 ~ 20644285 (+) False LOC122363025
XM_043216579.1 mRNA upstream 5208 20551148 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216582.1 mRNA upstream 5208 20551158 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216580.1 mRNA upstream 5208 20551173 ~ 20556627 (+) True si:dkey-30c15.17
XM_043263997.1 mRNA upstream 12478 20545992 ~ 20549357 (+) True glipr1b
XM_043264099.1 mRNA upstream 23217 20532906 ~ 20538618 (+) True cers3b
XM_043264892.1 mRNA downstream 24378 20589684 ~ 20598619 (+) True terb1
XM_043264178.1 mRNA downstream 44631 20609937 ~ 20618180 (+) True neto2b
XM_043264204.1 mRNA downstream 64437 20629743 ~ 20633636 (+) True arf5
XM_043264202.1 mRNA downstream 69539 20634845 ~ 20641011 (+) True LOC122362661
XM_043264203.1 mRNA downstream 69539 20634845 ~ 20641011 (+) False LOC122362661
XR_006246928.1 other upstream 5208 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 12517 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 474254 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 548049 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1720300 18777768 ~ 18841535 (+) False G127500
TU189467 other downstream 1835668 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1869500 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2891794 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 3159330 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 3884459 24449765 ~ 24457560 (+) True G128858

Expression Profile