RNA id: XM_043264170.1


Basic Information

Item Value
RNA id XM_043264170.1
length 2970
RNA type mRNA
GC content 0.44
exon number 5
gene id si:dkey-246g23.4
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23899926 ~ 23911982 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTCAGGTCCAGAGATTATTCGAGCGTTGGAAATTGTTGTGTAACTTCTGCGGTATAACAAGATAAACTCTCTTACATCCTCTGTATTAGAGCACTATCAGGAAATGCACCACCTTTTcattcaataatataatataatataatataatataatataatataatataattttttctctcttatttGAAATAACAGGTTACCTCCCCTTTCTGCTTTCCCTGTGTTGACCTTTGTATTTCTGTGTACAGTATCATGGATATAGAGTGTCATTGAAGATGGAAGTGGGAATGAGAGTCTTCTCAGCCGACAGACAACATGAGAGGTTGCAGATGATGGTTTGAACTTCTCTCCTGAGCTTACAATGGAGCTACGAAGGAAGAGGAGAACGGTTCAACCCGCAGGTCCTCTGGATGGAGGCTATGGCTGGTTCATAGTGCTTTCCACCTTCCTTGGCTTTGGGCTGACATTTGGTGTAATCAAGTCCTTCGGGGTGTTCTTCGTAGAAATCCACCACTACTTCGCGACCACAGCGACAGCAAGCTCATGGATCACGTCTATCTCTGTGGCAACTGTACATTTTGGAGCCCCCGTAGGCTCCGCTCTGAGCGCGTACTTCGGCCATCGGCCAGTGGTCATGGCGGGGGGTCTGCTGAGCAGCATTGGGATGGTGGCCGGGTCATATGCCCAGGACCTGCTACAGCTGTACATCACTGTGGGGTTCCTTACAGGATTTGGCTATGCCCTGACCTGGACCCCTACTGTGACCATGCTGGGCTGGTACTTTGACAAGCGACGGCCGGTGGCCAACGCTCTGGCCAGCACAGGAGAGTGCGTCCTCACCTTCATCCTCACCCCATCCTTCCAGTTCATGGTGGATCAGTATTCCTGGAGGGGTGCGATGCTGATCCTAGGAGCTCTGCAGCTCAACTTGTGTTTGTGCGGAGCTCTTCTGAGACCCCTCAACAGACACGTTCCTTCTAAAGAGCTCGTAGAGGAGAAAGAGCCCGAGCTGGAGATGTTACCTCAACCTCACGTAGACTCTAGAAGTTTACAAAATGGATCAGACTCAAAAAAATCGGATCCACTGAAGGTCAAAATCATTCGTTACGTGGACTACACTCTTATCGCTAATGCTCGCTTCATGGTCTACTCAATGTTTGGTGTTTTCGCTGCTCTCGGCTTCTTcgctccatctctctttctggTCCCGTACGCCCGCAGTCAAGGAGTGGAAGAGTACCAGGCAGCCGCTCTCATGTCCATCTCTTCGGCGCTGGACCTGTTAGGCCGGGTGTTATTCGGGTGGGTGGCTAATCTGCGGCTGGTCGAGACAGTCCATCAGCTGATTGTCACCGTGATTTTACTGGGCATTGTTCTGCTGCTCTGCCCATTTGCAACCACATTCACCCAGCTTGCGCTGTTCAGTGCGAGCTATGGACTGGTGTTTGGAGCGACTGTGGCCATTCACATCACGGTGCTCGCGGACGTGGTGGGGGTGGAGAGGCTGGGAAGTGCTCTGGGCTTCTTCATGCTCATCCGCAGCAGTGGTGGCCTCCTTGGACCACCTTTGGCAGGAATCTTCATAGACAAAATGAGTGACTATGGCACTGGTTTTCTGATGGCGGGCGTGGCACTTCTGGTCTCCGCCCTCTTTCTCCTTGTGTTacagaagatgaacaaaaaagAGACGGGAAAGGTTAAGGACGTCAACTTGGAGAATAGGAAAGGACATGAGGATCTAAAACACAGACGTTTCAGTTTCAGAAAAAGTTAGTAAGAGGAGGCTCAGACATAACGTGTAATGTTTCACCACAAATGCAGTCATGTAAGCAGAGATTATAGTTAAATGACATTCAAAAGTGTAAACTGAAAACATGTCCTCATGCTGCTGATATGCACTGTCTGTCCATTCGTGAAGGAAACTCTTAATGACAGCGAGTGAACAGACATTTTCACCTAAATAAAGCTTTTGATGGCTTCTGGGAAGTCTTCTTAGCGTAGCCCTACAGCCGTGCCATTACAAGCAATATTTCATCAGATCTATTGCTCTGGAAAATGGGCAGTGACTTAATGGACTAATGGAACTGACTCAGTTTAGCTGCAGCCAAAGATGATCACATGCAGTCAAGAACAATATCTGCAGCAATTTCTTGTGTGACATTAAGAATGTATTTTAGTCTGTCTGGCCAAAATTGCTCAAATTTGGGTTGGACTTTGGCGTCTCCAGGTGTCATCTAAATCCCACAGTCTTCTCAATGAGAAAACGTTCTCATTTATCGCCCTCTGAAGGTGAGAAACTGGAAATGCAGGATAGATGGCTACCGTGAAACTGTAAATTACCTAATTTCcacattatttgttttatacatattataaataagctgtttttttaatgtataatctCTATTAGATTAAAACGgctgtttattttacatgtagCAACTGTCACATCAGTAAGTCAAGATTAAAGTGACTAAGTGCATATTTAAGAGAGGataaaacgaaaaaaaaggtccattttgttttgctaaaaaaCATCTTAGTATAGCTTGATCCTGGATCTGTGGGAGATAAATGTCTTTCTGAAGGCATAGACTAAAAACACAGGCACATCCTGCTGAAGAAAACCACACGATAGATAGCAGTGTCTAGATCTTTCCTGTTTACACTGTGTGATGAAACGGTAACCATTCAAAGCCAAACCATCTTTATAAGACATCAAAGCATATTTCTCATCTCTCCTCTCTTCACAATAATCTGTTCCCAACATCTGCactttgatgtattttatgcatGCTGGTCTGTGTGTATCACAGATaaataaatggctttttaaactggggggaaaaaagaaataaatggaaaataacagaaataaaattcaatatgCTTGTTATTTTGCATGAATCTGAGAAAGCAAACCTTCTGCTAGACAATAAAGAGCCTTCAGTGgcatacaaattaaaaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189981 lncRNA upstream 116488 23785024 ~ 23787163 (+) True G128725
TU189935 lncRNA upstream 544094 23358451 ~ 23359557 (+) True G128699
TU189930 lncRNA upstream 566562 23335791 ~ 23337089 (+) True G128696
TU189624 lncRNA upstream 823341 23068310 ~ 23080310 (+) True G128476
TU189621 lncRNA upstream 836583 23066812 ~ 23067068 (+) True G128475
TU190019 lncRNA downstream 116507 24028489 ~ 24029817 (+) True G128753
TU190041 lncRNA downstream 144738 24056720 ~ 24063271 (+) True G128770
TU190043 lncRNA downstream 146371 24058353 ~ 24066103 (+) True G128772
TU190086 lncRNA downstream 385127 24297109 ~ 24297333 (+) True G128803
TU190087 lncRNA downstream 385627 24297609 ~ 24297845 (+) True G128804
XM_043264167.1 mRNA upstream 11486 23859036 ~ 23892165 (+) True kcng4a
XM_043264168.1 mRNA upstream 11486 23863436 ~ 23892165 (+) False kcng4a
XM_043264166.1 mRNA upstream 11486 23872264 ~ 23892165 (+) False kcng4a
XM_043264175.1 mRNA upstream 50376 23820380 ~ 23853275 (+) True si:dkey-246g23.2
XM_043264259.1 mRNA downstream 3947 23915929 ~ 23927588 (+) False wfdc1
XM_043264258.1 mRNA downstream 3949 23915931 ~ 23927588 (+) True wfdc1
XM_043216813.1 mRNA downstream 16308 23928290 ~ 23936310 (+) True utp4
XM_043265074.1 mRNA downstream 25018 23937000 ~ 23952211 (+) True vps9d1
XM_043265075.1 mRNA downstream 25018 23937000 ~ 23952211 (+) False vps9d1
TU189952 other upstream 166805 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 323849 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1464972 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1496669 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3347024 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 537783 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 671863 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1083789 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1382761 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1382761 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile