RNA id: XM_043264172.1


Basic Information

Item Value
RNA id XM_043264172.1
length 1188
RNA type mRNA
GC content 0.43
exon number 5
gene id si:dkey-246g23.2
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23818053 ~ 23853275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATCTCCAAACTGCATCAGCCTGATATAGACTAGATGATGGCTAGATGAGACAgcatatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctccagCTATTATAGTTGTCAAACAAGTCTTCGCTTGAAACAAGGGGATGGGAGTATAAAGACAGTGGTTTGAGAAGGACCGAGCGATGGAGCAAGGGTCGGAGGAGAACATGGAGAGCTCATGGACTCTGCTCTCCTGGCTGGCTTCTGGAGTGATGGTGTTCGGAGGTGCGGTTCCCTACGTCCCCCAGTACCAGGAGATCCAGAGGACCAATAACTCGGAGGGATTCTCAACAAGAGTCTGTCTGGTGCTGCTCGTGGCTAATATACTTCGCATTTTCTTCTGgatAGGCAAGCAGTTTGAGCTGCCTTTGCTCCTGCAGAGCGTGGTGATGATCCTCACCATGCTGGCTATGCTACATTTGTGCTGTTCCATCCAGAGCAGCAACCGCGTCAGTACTAAACAGCACCACATCACAGATTTGGACCTTCGGTATTTCTGGAGCTGGAGTTCTTTTGAGGACTATCTGATGTTCTGCTTTGCCTTCACGCTGCTGTGTGCTTTCGTAACGTTCCTCTTTCTGGACTGGGTCCTATTTGTGGAGGCCCTGGGCTCTTTGGCCGTAATGTTTGAAGCCATGTTGGGACTGCCTCAGCTGCTGCAGAACTACAACAACCGCTCCACCCGAGGCATGAGCATAAAGATGGTGCTTTTATGGACAGCTGGTGACATCTTTAAGACTGCGTATTTCGTGATCAATGAAAGCCCCACTCAGTTCGTGGTCTGTGGTGCAGTACAGATTTTAATTGACATTGCCATTCTGCTCCAGGTGGGCTACTACAGCCAGGACACAAGAATCAAACTGGGCTGAGATCACTACAATAATGATGGTGATCAACACTTCTAATTATGGACATTAAATGTGCTACTTATCTGCAAAACtatgcttttataaaaaaaaaaatatatacacaggGTTCAAAAGTCTGAAACTGCTAGTGAAAACTGATATTCTTATTAAAGACTTAGTattcaattaataaattgttaaaaataataaatagtttcaATCTGTTGAACCCTGccggattatatatatatatatatatatatatatatatatatatatatatatatatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189981 lncRNA upstream 30890 23785024 ~ 23787163 (+) True G128725
TU189935 lncRNA upstream 458496 23358451 ~ 23359557 (+) True G128699
TU189930 lncRNA upstream 480964 23335791 ~ 23337089 (+) True G128696
TU189624 lncRNA upstream 737743 23068310 ~ 23080310 (+) True G128476
TU189621 lncRNA upstream 750985 23066812 ~ 23067068 (+) True G128475
TU190019 lncRNA downstream 175214 24028489 ~ 24029817 (+) True G128753
TU190041 lncRNA downstream 203445 24056720 ~ 24063271 (+) True G128770
TU190043 lncRNA downstream 205078 24058353 ~ 24066103 (+) True G128772
TU190086 lncRNA downstream 443834 24297109 ~ 24297333 (+) True G128803
TU190087 lncRNA downstream 444334 24297609 ~ 24297845 (+) True G128804
XM_043264127.1 mRNA upstream 3313 23789393 ~ 23814740 (+) True zgc:173742
XM_043216624.1 mRNA upstream 81205 23474074 ~ 23736848 (+) True cdh13
XM_043264329.1 mRNA upstream 512715 23289516 ~ 23305338 (+) True plcg2
XM_043216857.1 mRNA upstream 529990 23283862 ~ 23288063 (+) True meak7
XM_043264187.1 mRNA upstream 541583 23271267 ~ 23276470 (+) True cotl1
XM_043264167.1 mRNA downstream 5761 23859036 ~ 23892165 (+) True kcng4a
XM_043264168.1 mRNA downstream 10161 23863436 ~ 23892165 (+) False kcng4a
XM_043264166.1 mRNA downstream 18989 23872264 ~ 23892165 (+) False kcng4a
XM_043264171.1 mRNA downstream 46651 23899926 ~ 23911982 (+) False si:dkey-246g23.4
XM_043264170.1 mRNA downstream 50376 23903651 ~ 23911982 (+) True si:dkey-246g23.4
TU189952 other upstream 81207 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 238251 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1379374 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1411071 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3261426 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 596490 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 730570 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1142496 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1441468 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1441468 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile