RNA id: XM_043264191.1


Basic Information

Item Value
RNA id XM_043264191.1
length 1690
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC122362647
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24677660 ~ 24683938 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCATAGCATCAGCTGACTGCAGCCGTTTGCCCTACATATCTGATCACACTACAACACTTTCAACACATCTACACTGCTCCTCAGATGCGTTAACAGGTCCCGACGGCTCGCCAACATGAGAATCGCCTGTCTGCTGCTAGCTGCTGCCTTGTTTTGGACGTCCGACGCGATAGTACGGATTCCTCTACAGAAGTTTCGTTCCATCAGGCGCACTATGAGTGACACTGGCCGAGCTGTAGAGGAGCTTGTGTCCAGTTCTGCATCACTGAAATACAACCTAGGCTTCCCAGCAAGTAATGGTCCTACTCCAGAGACCCTGAAAAACTACCTTGATGCTCAGTACTACGGAGAGATCGGTCTTGGCACTCCTGTCCAGACCTTCACTGTGGTGTTTGACACAGGATCCTCCAACCTGTGGGTGCCCTCGGTCCACTGTTCCCTGACTGACATTGCCTGCTTGCTTCATCACAAGTACAATGGGGGCAAGTCAAGCTCCTATGTGAAGAACGGGACTGAATTTTCCATACAGTATGGTTCCGGAAGCTTGTCTGGTTATCTCAGCCAGGACACATGCACGattgggGATATCGTGGTTGAGAAGCAGATATTTGGAGAAGCTATAAAACAGCCAGGAGTGGCTTTCATTGCAGCAAAGTTTGATGGGATTCTCGGGATGGCTTATCCTCGAATCTCCGTCGACGGGGTTCCTCCTGTTTTTGACATGATGATGAGCCAGAAGAAAGTggagaaaaatattttctctttctatCTGAACAGAAACCCTGACACCcaacctggtggtgagttgctTCTTGGAGGCACAGACCCTAAATATTACACTGGAGACTTTAACTACGTGGCCATCAGCAGACAGGCCTATTGGCAGATTCACATGGATGGcatgaGCATCGGCAGTGAGCTGACTCTGTGTAAAGGAGGATGTGAAGCCATCGTGGACACTGGGACGTCTCTGATCACCGGCCCAGCCGCTGAAGTCAAAGCCCTGCAGAAGGCTATCGGTGCAATCCCCCTGATCCAGGGAGAGTACATGGTGGACTGTAAGAAAGTGGCCACACTCCCCACCATCTCATTCGTCCTGGGAGGAAAGACTTACTCTCTGACTGGAGAACAGTACATACTCAAGGAAAGCCAGGCAGGAAAGGATATCTGTCTGAGTGGGTTCATGGGCCTGGATATCCCTCCCCCAGCTGGACCCCTGTGGATTCTGGGTGATGTGTTCATTGGGCAGTACTACACCGTGTTTGCGGAGAATAACAGAGTGGGCTTCGCTAAGTCAGTATAAACCCAACTGTAGAACTTAACACTTAAGATGTGTCATGAGAGTAATAAGAAATCTAGGAATCCGTCAACATCATTTCTACTCAGATGACACGATAGTGGTATGATTGTTTGTTTGCACTGCTTTTAGCTTTCAAATGTTTTCGTTTTAAAGAGTCGTGTGGAGCTGAAATGATTCAGGAAAAGTCAAAAAGATGACAAGTtacactcatttgcatttttagctTGAAGCTTGTTTGAATATCTGTAATTGTAACATGAggttttaacattaattttataattgtcATGTCATTGATTTTTAGACACTActtgttttcagatttttgttgaaaattaccTCCCACTGATTGAACAAATCAAAATGGacaataaaggttttaaaaccAA

Function

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0009617 response to bacterium biological_process
GO:0006508 proteolysis biological_process
GO:0005764 lysosome cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01379 CTSD; cathepsin D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253143.1 lncRNA upstream 7816 24667484 ~ 24669844 (+) True LOC122362653
TU190188 lncRNA upstream 152606 24524527 ~ 24525054 (+) True G128863
TU190172 lncRNA upstream 218726 24458719 ~ 24458934 (+) True G128859
TU190169 lncRNA upstream 232461 24444502 ~ 24445199 (+) True G128857
TU190168 lncRNA upstream 234501 24442373 ~ 24443159 (+) True G128856
XR_006253144.1 lncRNA downstream 51249 24735187 ~ 24737012 (+) True LOC122362654
TU190615 lncRNA downstream 155124 24839062 ~ 24856231 (+) True G129115
TU190628 lncRNA downstream 316792 25000730 ~ 25000930 (+) True G129127
TU190626 lncRNA downstream 329812 25013750 ~ 25016984 (+) True G129125
XR_006253142.1 lncRNA downstream 350180 25034118 ~ 25049605 (+) False LOC122362644
XM_043264194.1 mRNA upstream 1811 24671802 ~ 24675849 (+) True LOC122362651
XM_043264189.1 mRNA upstream 17710 24590903 ~ 24659950 (+) True LOC122362645
XM_043216669.1 mRNA upstream 89323 24584028 ~ 24588337 (+) False LOC122323037
XM_043216668.1 mRNA upstream 89323 24586945 ~ 24588337 (+) True LOC122323037
XM_043264711.1 mRNA upstream 107439 24550432 ~ 24570221 (+) True eea1
XM_043264190.1 mRNA downstream 55087 24739025 ~ 24741360 (+) True LOC122362646
XM_043264192.1 mRNA downstream 60927 24744865 ~ 24751103 (+) True LOC122362648
XM_043263884.1 mRNA downstream 85458 24769396 ~ 24793099 (+) True lrriq1
XM_043216593.1 mRNA downstream 111877 24795815 ~ 24801103 (+) True alx1
XM_043216493.1 mRNA downstream 152309 24836247 ~ 24840156 (+) True nts
TU190455 other upstream 89615 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 220100 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 940814 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1097858 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2238981 22434806 ~ 22438679 (+) True G128367
XR_006246977.1 other downstream 311833 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 610805 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 610805 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 662467 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 1213485 25897423 ~ 25897505 (+) True trnal-cag_32

Expression Profile