RNA id: XM_043264199.1


Basic Information

Item Value
RNA id XM_043264199.1
length 1736
RNA type mRNA
GC content 0.37
exon number 6
gene id lyve1b
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25006079 ~ 25008464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agactcctggaCATTTTTGGTGGCATGTTCTGCAGTCATGGCTAGAGTCTGGTTACAATTATGTCTACCGTTCTTCTTATTTACAAGCGCACTCTGTCTGGATGTGAGTCAAATCCAAGTTCCTACAAACGATGGAATTTCTGGAGTATTGTTAATCCAATCCAACAGCAATGTGTACAGTTTTAATGCCACCGCAGCCAAAGAAGCATGCGAGGCTATTAAAATGAGAATGGCTACAAAGGCTGAAGTAGaaacagcaaacaaaaatgGTTTACAGACATGCAgGTTTGGTTGGGTTGAGGAGCAAATCGCAGTTATTCCTCGAATCGAGAAAAGCgaaaaatgtgctaaaaaccAGTTAGGCGTTTCTGTTTGGAGAGCTGACGTCAGCAAAATGTTTGACGTTTACTGTTTTAAGACAGCAGGTTCTGATGGATCATTTGAAACAACATCAAGCAGGCCTCAATCTACAACAGGAGGAACAATGCCATCAAACAACCATTATTCCACTAAATCAACCCATACATCTTCCATTAGGTCAACCTCTACTCCTGTCTACACATCAAGATCCCTGCCTCCACGTACATCCACTCCATCCGCTTCCTCCTCAGCATTTGTAACATTTCGTCTTTCTAGCATCAGAGACAGTTCCAAAGCAGCAACAAGCACTCAGTCTTTTTCATCTCCAAAAATGTCCTCTGAATTCTCAACCTCATCTTCTTCTGCTTCATCCACTCATTTTCTTCTTCAGCATAGCTCAAATCCAACCGGTCATCCTGCACTGTCCCAGACCGCTATGCCTGACAGACCATCCGCTAGAGCTCCCAAAACATTAATCATCACTTCCactgtgttgctgttattgctGGCAGCGGCAGGTGCAGCTTGGTATCTCAAAACTAAAAGACAACTGTTTACATCCTGGTCCAGAATGAGGCAAGAAGAGATGAATGAAACCGAGATgtttaaacgaataaatgagAGGCATTGTACGCCAGAACAGACCAGCAAAGGCAACGACAATAGCAAATGCAACTTCATCCTTAAAATGGAACAAGACTCATCctaaaaatgctgcatttttgtgaaaactacaTTTGGAACtacattttttatcttttttttaggCTGGAAAAAGTGGTCAGATGTTAGCCACTTTATTTTTCGTTTGCTGctcatttaattttcaaatattattttatgttcaaATGTCCATAACGAATGTAAATACTAGTCTATTCATTACGACGCCGTTTTAGTGccaccttcaaaaaaaaaaaaaaaaaaaacaagaataatgTCGAAAGATGTTGATGTTTCAAGAATAAAGCTTAAAGTTATAGCCTAATTTTTTGATATATCCATTTGTGCATACAACTGGTCTGGATAAGGAGCATCGGGGGACATTCCAAAATATATGACATATCGTTGTAATCGCTTAAGATTTTTGgtaattagtaattaatttgtattatttatataaattatgtataattgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtcgcATCAGTGCTAATATTTGAGGATTAAAGGATTAATGTGGCCTACTATTCTTACCTGCTTTGTTGTTAACATATTTTAGGGTGATGTTACCAaggtaataaatgtatgtatgtgtgtgtgttcttacaGCTTGTATGTTAGTAAAGTGAAATCACATCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190628 lncRNA upstream 5149 25000730 ~ 25000930 (+) True G129127
TU190615 lncRNA upstream 149848 24839062 ~ 24856231 (+) True G129115
XR_006253144.1 lncRNA upstream 269067 24735187 ~ 24737012 (+) True LOC122362654
TU190464 lncRNA upstream 277100 24664451 ~ 24728979 (+) True G129038
TU190626 lncRNA downstream 5286 25013750 ~ 25016984 (+) True G129125
XR_006253142.1 lncRNA downstream 25654 25034118 ~ 25049605 (+) False LOC122362644
XR_006253141.1 lncRNA downstream 25654 25034118 ~ 25042184 (+) True LOC122362644
TU190635 lncRNA downstream 34624 25043088 ~ 25043820 (+) True G129134
TU190642 lncRNA downstream 54990 25063454 ~ 25141859 (+) True G129135
XM_043264616.1 mRNA upstream 6809 24990583 ~ 24999270 (+) True eif4g2b
XM_043216493.1 mRNA upstream 165923 24836247 ~ 24840156 (+) True nts
XM_043216593.1 mRNA upstream 204976 24795815 ~ 24801103 (+) True alx1
XM_043263884.1 mRNA upstream 212980 24769396 ~ 24793099 (+) True lrriq1
XM_043264192.1 mRNA upstream 254976 24744865 ~ 24751103 (+) True LOC122362648
XM_043264439.1 mRNA downstream 823 25009287 ~ 25013620 (+) True rnf141
XM_043264440.1 mRNA downstream 876 25009340 ~ 25013620 (+) False rnf141
XM_043216926.1 mRNA downstream 81731 25090195 ~ 25095673 (+) True c18h11orf16
XM_043264256.1 mRNA downstream 90918 25099382 ~ 25103751 (+) True si:ch211-242e8.1
XM_043264257.1 mRNA downstream 90918 25099382 ~ 25103751 (+) False si:ch211-242e8.1
XR_006246977.1 other upstream 10129 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 418034 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 548519 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1269233 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1426277 23457100 ~ 23579802 (+) False cdh13
XR_006253170.1 other downstream 286279 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 286279 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 337941 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 888959 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 912803 25921267 ~ 26174156 (+) True G129424

Expression Profile