RNA id: XM_043264208.1


Basic Information

Item Value
RNA id XM_043264208.1
length 6210
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC122362666
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17983478 ~ 18070581 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctatctatctatctatctatctatctatctatctatctatctatctatgtcccTTCCCTCCAAACCCGTATAGTATCCTCGTTTGTAACAGGGGGACAACTGTTTGGTTTTGGCCCTCTGACGTCACACCCATTCCCACAATGCCATAGTAACACGACTGCGCACTCGCGCTCGTGGACGCGCACCAGCAGAGACAGCCCATCACACACAGAGAGCGAACATGGCGGGCGCCTCCGACCCTCTGGAAGACATGCTCTTCTCCGAGGTGGACGAGAAAGCCGTGAGCGATCTGGTGGGCTCGCTGGAGTCTCAGCTGGTGGGCGAGAGCGAGCCGCCCGCCGCGCGCCAGAGCAGCgcgaagcagcagcagcagcagcagcagacagGAGGAACCGCGCAGCTGCCCGCTCCTGTAGACTCTCCATCAGAACCACAACAACAAGCGCAGCAGCAGAACGCGCGGAAAGCGGCGCGCAACCCGGATCCTGACCCGAAAGACGCCAGCATGGACAAGCACGCCAAAGCCCTGGAGAAGGAGAGCCCCCTGAAGACGCACGGCggcagcatcatcatcatcaccacggcggcggcggcggcggcagcaTCCGACGCTCCTGCACCGGGCAACAAAGGTGAGAGCCCGAGGGACACCCGCAAGAAACACCCGGGGAATACGCGCACGCTGCGCTCCGCGGCGTCCCACAGTCTGAACGGCAACGGAGGCGGCGCGGCGTCGGCGTCGGCATCATCCCCCAGCACCTCCGGCACGACTTTCACCGTGTCCAGCAACCCGCAGGCGATCGCGCTGGACCGCGGGACGCCCACCATCGCGCTGCACCGGCTCCCGCGTCACATCATCGCCAGCATCGCGCAGAACGGGAACGGCACGTCGGTGTCCGCGCTGGTCCAGCAGGGCGCGCGGATCAACCACAGCAAAACACCCGCGGACGGCAACGCGAAGCCAGCGGCGGCCAGCCCGGTCACGGCGGCGCCTGTCAAAGCCGCTGTCAGCGCGGCCGCGGTCATCAGACCTGCGCAGACCCCGACGCAGGCGGCTGCGCAGCAGAGGGTCGTAACGCCGCAGCTGATCGTCAGACCGCCGCAGCAGCAAACCACTATACAGCTGCCTCCCGGCTTCACCATCCCACCAGgtaTGGTGCTGGTCCGGACAGAGATGGGTCAGCTGGTGATGGTTCCTCAGCAGGCTCTGGCTCAAGCTCAAGCTCAGAACAGCATCTCTCCTCGGCCCTCCACGCCCACCAGCGTGGCCACGTTCAGGGTCACGACCCCACAGtctccTGTTAGCGCTCAGGCGATTCGTCCTGCTCCAGCCGCTCAAACTAAACTGGTCCAGTCTAGTTCACCGAGCTCCACGGCCCAGACCAGCAGCTCAACCTGCCCCGCTAAGGCCCCCGTGGCAGCCGCCGTGGCAGTGACAGCTCCCCAGCAGGTCCAGCCGGCCTTGGGCCCCCAGGGGCCCCTCACTCAGATGCCACTGGCCCCGCAGAGCGCAGCCGCCCCGGCCCCCGGAGGTCCGGTCGTCTCCCAGGAGATGCAGGAGAACGTGAAGAAGTGCAAGAACTTCTTGGCGACGTTGATCAAGCTGGCGTCCCATAACTCCCCGTCCCCGGAGACGTCTCGAAACGTCAAAGCGCTGGTGCAGGATTTACTGGACGCCAAGATCGATCCGGAGGAGTTCACCAGCCGCCTGCAGTCGGAGCTGAAGTCGTCTCCTCAGCCGTACCTGGTCCCTTTCCTGAAGaaaAGTCTCCCCGCGTTGCGTCTGTCTCTTCTGAACAGCCAGCAGTCTCTCACTCAGCCTCTGCAGCCCAACAAGACGAGCGTGACGCCGGTCCAGACGCCGGTCAGTGTGCGTCCGCACCAGCCCAACAGCACCACCGTACTGCCACAAGGTATCAAGAGGGCAGTGGGGCCTGGAAGTCAGATACGGATGCCTGTGGTTATAACGCAGACGGTGCGAGCGACGGGTGCTTTAGGGAAGCCCTCGGCGATCCAGACGGGCAAAAGCCCCGCGGGCGTAACCATCCAGCTCTCAGGAAACCAGAAAAACAAGCTGAATGACCCGGGAGGAGGCTCGTTCAGAGACGACGACGACATCAACGATGTTGCGTCTATGGCCGGTGTGAACCTCAACGAGGAGAGCGCGCGCATTCTAGCGACCAACTCCGATCTGGTGGGAACGCAGATCCGCTCGTGTAAAGACGAGGCCTTCCTCCCCGCGGGCCTGTTGCACCGGCGTATTCTGGAAACAGCGAAGAGGTTTGGAGTGACGGACGTACCGCTGGAGGCTGTGAACTTCATCTCTCACGCCACCCAGTCCAGATTACGAACAGTGCTGGAGAAAGTCTCCTCCATCGCCCAGCATCGTATGGACTCGTGTAAGgAAGACGAGTGGTACGAGCAGTCGTCTGATGTGCGCTCACAGCTCAAGTTTTTTGAGCAGCTGGAACGGATGGAAAAGCAGAGGAAAGATGAGCGAGAACGAGAGATTCTCCTCAGAGCGGCGAAGaGTCGCTCGCGGCAAGAAGATCCAGAACAAGCCCGTCTGAAGCAGAAAGCAAAGGAGATGCAGCAGCAGGAACTCGCCCAAATGAGACAACGAGACGCTAACCTGACGGCGCTCGCCGCCATCGGCCCTCGGAAAAAACGCAAAGTGGACTCGCCAGGAGCAACCACGACAGGCACTGAGGTGTCGGGGAGTTCGGCAGGTTCTCCGGGCGGATCGTCGGCCCCGTCCAGCTCGTCACGGCAGTACAACCGCCAGAGAATAACACGCGTCAACCTCAGGGACTTCATCTTCTACAtggagcaggagagagagaccAGCAGATCTCTCCTGCTGTACCGCGCTCTCCTGAAGTAGCCGACTCTCCACGCCACAGAGGAATCAGCAGCCAAACCCCGAGCAGACGTTCACCCCAACGACCGACTTCCTTCTCAGCCCTGCGACGTGCCTTCAGCCCCGTGTCCGTGACCTCGTGATGTCAGCGTTGCTTTTGATAGAAAAgctttgaaaaaaagagaagaaaaaaaaaaaaatgaagatgtgCTTCACGTTTCCTGTTTTCTCCTCAGCGTTGTTAGgtaaactgtatttatgataGTGGATTTTAACGCTTGTTTCTCCGGCTTCGAGCCAAGGAGCGTTTTTCGTTTGTTCGTGAACGAATGAATCTGACTGCGATTATGGCTTTCTTCATCAGTGTTCTccagtaaaaacaaaacgtaCATGAAGTGTAAGTTAAACATATCGATCGAATTCACGGCCTTGTTTTGGTTTCATTGGGATTGCGATTGGGTTTGTACGGAAACTAGGGAAATAATTATCACCATTTATTAAAACGAGGGAACAAATAAGTAGACCGTACAAAATAAATCCTTAAAATGAGAGAAAACGTACTGGCAGCTCGTTACACAGGACGTTAGACGTTCATTTTGTGGATTTCTGTTAACTCTAAAACTAGAAATACTGGTAAAATATACGGTATATTGCGCCCTGTTTttacagatttagttttttggaGTGTATAATGTGGCTTAAATCAACTAAAACGAGGGAACTAGTTGGTGCCAATTGGCAACATTTACTTAAACAAGGAAATAAATGAGCACGAAATTTGCCGCAATTTAGAAAACGAGGAAATTGGTAAGAATTCGCAACGATTTGTTAAAACAAGTGAATAAATTAACACAGATTTGCCACAATTTTCTGAAACCATGGAACGAATTCATCCACGTTTGCCGTGATTTACTAAAACAGGGAAATGAATGAGTGAACAACTACtgagaattaatttaatttacaaatttgTCGCAATTTGCTAAAACGAGGGAACAAATTAATACACGTTTGCCACAGTTTACTAAAATAAGGGAAGAAATTGGTATAGATTGTCATCGAAAGCAGTCAAATGTTCCAAAATTTACCAAAAAGGATGAAATAAATTAGTAGAAATGTGGCACGGTGATCAAGGGAGTGAATTAGTGTAGATGTAAAACAAACTTGCATggttttagtgaaaaaaaaaaaaaactagtttgcACAAATTTGCcttgatttattaaaacaatggaaaaaaccttttttccaATTTGCTACGATTTACTGAAACGAGGGAACAAACTAGGACAAATTACCCCCGGTTTACTAAAACCAACAAATTACTACAGATTTGCCACGATTTACTAAAATAAGGGAAGAAAGTGGCATTAATTGGCAATGATTTACTGAAATGATGGTTTTGTACGAATGCGCCACTGTTTACTAAAACGATGGAatgaattcatacaaatttgccatgatttactaaaaaaagaaaatgaattatgCCAAAAACTGGCTAAAATAAGGGAAGAAATTGACATAAATTGGCAATGATTTGCCGAAATGATAAAACGAGTCCAATTTGCCCTGAATTAAAAGAGTAGAAATTCCGctcaatttgtttatttaaaaataatcttcaccacatttgatttatttgggcttttaaaaagaatatgaaaatatttgatgcttttttgctttttccgTATAATATTTTTGACTTCTAATTCTGATGAAGTGAGTGTTTTTCGCAGTGCAGATGTCGTTCTGGTGTATATTCAACACGGAGCGCTTACAGTGACGATCTTTGAGACGAAACGCCTTGAAGTGACCTGTGTACTTTCTGTTAAAGAATCGTTCTTTAAACCTTATGCAGACTTTCCCGAACATGATCATCttcgtcatcatcatcaccatcatcatcatcaccatcatcagtGTCCAGCCAATCACAGTATTTAAAACCCCGTAAAAAGTTGACTAAAAACTCTTTTTATCAGCAAGAACTCAATGTAAATAGACTTTTTGATGAGTATGGTTTTTAATAGCATGTATAAATGATTTCCAGATGAAAATAACGTTTTAAACCGCTTTTAAATCGATCATGAAGCTTGTGTCCGTCATTGTGATTCGTGCAGCTTTACCACGTGTCCACGAGGAGCACGGATCCCGTGTTTCCCAGAATCAGGCCAGCAGATCTGAGCTATAGCAATACAACCGCTCCAACGCATCGCCTCGAACGTTAAAAACCACGCTTGACGCTTCTCCCAATCGGTTCAATCAGAAAAGGCCAGACTTTCCCAACCGGTCCCAACACTTGCTCGTTCCAGAATGCAAAGGCGAGCGTTTTAATTTCGGATAGCAATCGATCgcattaaaggaatggttcgcCCCAATcgttggtcaccattgacttccatagtagggaaaaaaaatactatgggagtcaatggtgagCCAAAACATCCTGGTTATAAACTTTCTTCGGagtatcttcctttgtgttcatgCAACTCGAAAATTCAACCGTGAATAACAAAACAATTCGAGAGCGAGTAAACGGCGGCGGAagtaaaatttttgggtgaactattcctttaacactAGAAACATgcattaagtgttttttttattatttggacTGTAAAACTGGATTTCACTTCCCTCGTCTGTTTTAATTCTACACTCAGTATTATCGGTTCTCCTACGGTATTAATCTTATCGGCGTCGGTCCTTCATTCATCATCCATAAGCTCGATTGTGAGGAAGAACTTGAATCCCGTAAGCGTTTATTTTGGCGAGGGTTCGCCGTACACGATGTCAGGAGAGGTCAAGTTCCGCGACCTTTCTTCATTCCGAGATCCTCTCGCTCTTCTATGCACCGTCATGAATCCCGTCGCTTTGCCGTTTTGTGTTTGCGTGTGAAACCGAACGTCTCGGCTTGGTTTCTCCGTCTGTGTCCGTCAAACTCTAAAAGGGAAACTTCGTTTTCTACCTATTTCTATTTTCTCATGCACATCCCCGACAGTCCCGTTCGAAACAAgcacaaatgtatttgttgGGTTGTTTAAACCGATTTTATTAATCTTCTGTTTTCCGCTGGAGGCTCTTTCTATGACTTACGCTTTGTAGCCAAAATATTATTAGGACTCTCTTCATATTGTATTACTGACGTGCACAGCTGGAATTTAATGTTTCGATCTACGGATGATTTGTATATATTGTTTACAAGACCTTGTGTTTATTAGAACTATCTTATTTTTGGTAAATTCTGTACATATcctgaaatatttctgtttgtgtgAACATACTTCTGTATTTGTACCTATTTTGTAAAGGAATAAATAAGCTGTTTACTAAa

Function

GO: NA

KEGG:

id description
K03129 TAF4; transcription initiation factor TFIID subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187939 lncRNA upstream 2137 17977675 ~ 17981341 (+) True G127268
TU187928 lncRNA upstream 8976 17972550 ~ 17974502 (+) True G127263
TU187874 lncRNA upstream 49659 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA upstream 49659 17929468 ~ 17933819 (+) False G127233
TU187898 lncRNA upstream 125329 17857012 ~ 17858149 (+) True G127243
TU188151 lncRNA downstream 281159 18351740 ~ 18352103 (+) True G127413
TU188170 lncRNA downstream 415276 18485857 ~ 18487271 (+) True G127431
TU188173 lncRNA downstream 421416 18491997 ~ 18518461 (+) True G127434
TU188180 lncRNA downstream 431860 18502441 ~ 18546723 (+) True G127439
TU188185 lncRNA downstream 456548 18527129 ~ 18528132 (+) True G127443
XM_043264339.1 mRNA upstream 14017 17937030 ~ 17969461 (+) False LOC122362789
XM_043264342.1 mRNA upstream 14017 17937084 ~ 17969461 (+) False LOC122362789
XM_043264340.1 mRNA upstream 14017 17943052 ~ 17969461 (+) False LOC122362789
XM_043264341.1 mRNA upstream 14017 17945308 ~ 17969461 (+) True LOC122362789
XM_043216610.1 mRNA upstream 66210 17887967 ~ 17917268 (+) True LOC122323000
XM_043264985.1 mRNA downstream 206783 18277364 ~ 18334482 (+) True pepd
XM_043264104.1 mRNA downstream 268562 18339143 ~ 18343857 (+) True ugt5f1
XM_043264106.1 mRNA downstream 268618 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA downstream 268619 18339200 ~ 18386930 (+) False LOC122362573
XM_043264105.1 mRNA downstream 278086 18348667 ~ 18386930 (+) False LOC122362573
TU187918 other upstream 55313 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 55313 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 96267 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 171311 17808674 ~ 17812167 (+) False G127239
TU187698 other upstream 571885 17410866 ~ 17411593 (+) True G127098
TU187968 other downstream 67954 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 489785 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 489785 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 707187 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 707187 18777768 ~ 18782159 (+) True G127500

Expression Profile