RNA id: XM_043264246.1


Basic Information

Item Value
RNA id XM_043264246.1
length 2393
RNA type mRNA
GC content 0.46
exon number 15
gene id tbxas1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23081027 ~ 23140905 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTGTCAAACACGGGAAAGACAGGTCTCATCATGCAACTATTAGTCGACGTTCTCCAATGGTTTGGAGTCGAGGCGAGCGGATGGTCTGTGTCCGTGTgcctttttttgctgtttgtcaGCCTCCTTTACTGATTGTTTGGTGTTGTGCTGGACCGTAGCGCCTCCTCATCCACAGCTGATCAATTGCAGCAGCTCTCTGCTCTCAGAGATAAATGTGCGGCCTGAGCTCACTACCGCGGCGTGACCGCCAAGCGTCTGATCCAGGTACTCCATCTCCCCTTACTCTGTCTTGGAACGATGTGGCATCAAGCATCCAAAGCCTTCGCCGTTTTTTGGGAACCTTATGATGTTTAAAGATGGTTTCTTTAAGGCACAGTCTGAGCTAATAAAGAAATACGGACACATTTGTGGttaTTATATAGGCCGGCGGCCTATAGTGATCATAGCAGACCCAGATATGCTCAGACAGGTGATGGTGAAGGAATTCAATAAGTTTCCCAACAGAATGACTGTCAGAGGCATCACTAAACCCATGAGTGACAGTCTGGTCATGCTGAAGGGCGAACAGTGGAAACGAGTACGCAGCATCCTCACACCAACTTTCAGTGCGGCCAAGATGAAAGAGATGGTTCCCCTCATCAACACGGCCACAGAGACGTTACTGAGAAACCTGAAGAGCCACGCTGAGTCCGGTAACAGCTTCAACATCCACAAgtgttttgGCTGCTTCACAATGGATGTAATTGCCAGTGTGGCGTTCGGTACGCAGGTGGACTCTCAAAACAATCCCGATGACCCTTTTGTGCACCACGCCTCCAAGTTCTTCGCTTTCACCTTCTTCAAACCCCTCATGATATTCTTCATGGCGTTTCCATTTCTGCTTCAGCCTCTTGCTGGTCTCCTTCCCAATAAATCAAGAGATGAGATGAACAGCTTTTTTATCAAATGCATTCAGAAGATGATTAAACAGAGAGATGATCTGCCCCCAGAACAGCGGAGACGGGACTTCCTGCAGCTTATGCTGGACGTTAGGGCCAGCAGCAAGTATTTGTCTTTGGAGCACTTTGATGTGGTCAATGACGCCGATGAACAGGCTTGCGACGAACAGGGGATGGACAACGGACCGGAAAGCGGACCTGGAAACGAGTCCACCAGGCGCACACAGCACAAGAGGATGATGACGGAGGATGAGATTGTCGGTCAGTCCTTCATCTTCCTGTTGGCCGGCTATGAGACGAGCAGCAACACTCTAGGCTTCGCATGCTACCTGTTAGCGCTCCATCCAGAGTGCCAGAAAAAACTCCAAGAGGAAGTGGACGAGTTCTTCAGCAGACACGAGACTGCAGATTACTCTAATGTCCAAGAGCTGAAGTATTTAGAAATGGTTATATGCGAGTCTCTGAGACTCTACCCACCTGCGTTCAGGGTCGCACGGGATGTTGATCAAGACACTGTGGTGAACGGCCAGCTTCTGCCTAAAGGATCATCTCTGGAGATACCTGCAGGTTACCTTCACTATGACCCAGAGCACTGGACTGAACCTGAAAAATTCATCCCGGAGAGGTTCACTCCAGAAGCCAAGGCCAGCCGGCACCCGTTTGCGTATCTGCCGTTTGGAGCGGGGCCACGCAGCTGTGTGGGCATGAGACTGGCCCAGCTGGAGATTAAAATGGCTCTGCTTCACATATTTAGGCGCTTTAACGTGACGGCCTGCGAGGACACCGAGGTTCCTCTGGAGTTGAAGTCGCACACCACCCTCGGCCCCAAGAATGGGATTTTGGTAAAAATCACCAAGAGGGAGAATTTTGAGGATGATTCCTGATGGGGTTTTAGCTGTCAGTTGGGccgtctgtttttttttatcaaattatttagaaatcttATCACCTGGCAACTAAATAGTAACCTTCTGAGCTATTCGATTAAATGAAATTCAATTCGGCACACTTCATTTACAGCAAAAGGCACAGATGCGCATGTGTGAAAAGCATAACATGTTGAACCAAACAACGGTCCTAGTACATATAGCACTACCTGACTATTTCTTACCTCAGATCAGCAACACAGAGTGATCATCACTATAAGGAACCACCCAGatgattaacaatgcagatgcacatttattttgttactgaAGCCAATGATAAGTCTCTTAAATCTAAATACAACCAACTATATAGTGTAACAGTGATTTAAATGTCAATGATTTGATAAAAGGAACTGGGATTGGACACATTTCGCCTAAACATCGGCGAGATTTGAACTTCTGATTATTGTGTCGTGATACATTATATCgcattaatgtgatttttaaggTTCATTGTGGTGCATTGTTGAACTGTATGAActtgaattaaatgaatatttcttaataaaatgtttagaatatA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K01832 TBXAS1, CYP5A; thromboxane-A synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189624 lncRNA upstream 774 23068310 ~ 23080310 (+) True G128476
TU189621 lncRNA upstream 14016 23066812 ~ 23067068 (+) True G128475
TU189616 lncRNA upstream 21143 23057387 ~ 23059941 (+) True G128470
TU189615 lncRNA upstream 23862 23057020 ~ 23057222 (+) True G128469
TU189613 lncRNA upstream 26555 23053402 ~ 23054529 (+) True G128467
TU189930 lncRNA downstream 194886 23335791 ~ 23337089 (+) True G128696
TU189935 lncRNA downstream 217546 23358451 ~ 23359557 (+) True G128699
TU189981 lncRNA downstream 644119 23785024 ~ 23787163 (+) True G128725
TU190019 lncRNA downstream 887584 24028489 ~ 24029817 (+) True G128753
TU190041 lncRNA downstream 915815 24056720 ~ 24063271 (+) True G128770
XM_043263894.1 mRNA upstream 191584 22854504 ~ 22889500 (+) False fgd4a
XM_043216705.1 mRNA downstream 100568 23241473 ~ 23242712 (+) True LOC122323065
XM_043263982.1 mRNA downstream 103632 23244537 ~ 23250136 (+) True LOC122362508
XM_043264185.1 mRNA downstream 109970 23250875 ~ 23258449 (+) True tat
XM_043264186.1 mRNA downstream 121453 23262358 ~ 23266125 (+) True zgc:56622
XM_043264187.1 mRNA downstream 130362 23271267 ~ 23276470 (+) True cotl1
TU189495 other upstream 642405 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 674102 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2524457 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2531766 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2993503 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 316195 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 583731 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1308860 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1442940 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1854866 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile