RNA id: XM_043264256.1


Basic Information

Item Value
RNA id XM_043264256.1
length 2250
RNA type mRNA
GC content 0.45
exon number 7
gene id si:ch211-242e8.1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25099382 ~ 25103751 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATTTAAGAGTGCACAAAATTACATCCACACGTGCACTTCATGTTATGTAAGAGCCTGCCTCACTGTATGCTGTAGGATAACAGCAGCAGTGAGCGGACAGGCAGAGCAGATGCTGTGTACATACACAGGGAAGCCTACGCTTAATACAGCACGAGAAACAGAGAAGAATCTGTCATTTTTAGGAGCTATGGGCATAAGCTTGGATGGACTAAGCTTGGATGAGCTTGGATATTCACAGACACCTCAAGGAAAAGGAGCTATTTGCGAGATACCTCATTGTGGCACTATGAATGGATTATAATCAGCAACAGTATCCTGATCACCACAGGACATATCTGCTGTTTTGATTCTTATCCTGCGGCCCCTTGGGGCCTTTGATCATGACATCAGCGTGGTCCTTGATGTGGGTTGTGTGTGGACTGATGGTGTGGTTTTCCCACTCCTACGCAGCCTCAGTGAGCCCCAATCTGCTCATGACCACCTCTGATCCAACCACTGATGAACAACCAATCAATCCAGAGTATCCGACTGAACCACCCAGCAACAACACAGACTCAATAAGTCCCAATCTGCTCATCCCAACCTTTGATTCAACGACTGACGAGCAACCAGTCAATCCAGAATATCCAACTGAAGTGACAGATTTCTTCAGCAACAATGACACAGCAGCCTCAGTGAGTTCTATTCTGCTCATGACCACCTCTGATGCAAGTACTGAAGAACAATCAGCTACTCCAAAACTTCAGAATGACTCCACAGATCCACCCAGCAACAACAACACAGGACTTGCGTGTATTTCTGTGCTTCCCCCACGACGAGGATCATACTACGTGGAGCACGGCACAGGGGTGTCTGTGGGCTCCATGCTTGTGTTCTGGTGTAAGGAGGGCTACCAGCTGGTGGGACATGAGAAAATCACATGCATCCTACATGCAGGTGTCCCTCGATGGAGCAGCTATCTGCCAGTCTGTGAGAGTATCCCTCGGCCAAATGACCAGGGACTTCGCATTGCTTTACTAGTCTCTGTTGTGAGCGGGGTGGTCATCCTGGTCATGACTGTCTGCTTTATTGTCTGCTGTTGTCAAGAGCACATgagcaaaaaaaaggaaaagcatcGGACGGGGAGAAGCAGGAGAAGAGAAACACGGAGCTCAAGGTCTCGGAGGAGCCCGTCCTGGTTGGAGAGAGAGCACATAGACTGGGAGGCATTCCCTCCGCCTAAACTTTTCAGCTTGTCCCAGCGTCTCGATCGACCACTGCCTCCTGGTAGTCCCGTTTATTCAGAGGTCGTCAGAGCCTATGAGAACAGAGGGTATGAGAGGAGTCAGGAGAGTCTGCTGAGAAGCCCCCATAGCACATACCCTACATACCACGCCAACAGCCAAATTTACCCGGCCCTTGTTTTCCAAAGGGTTCAAGCTGAGCCAAACCCCTCCACCTCTTCTACCACCCCAGTTTACGTACAGATTTCTACACCTCCCAAAAACAAAACCCCACACGCTTCCGCTGTCGCCCACCCATAGACTCGTCCgaacagaaatcatttttctCATCAGCAGCACTGAATGTGACCAAGACAGTACAGACAACATTGCACAGATGTGTGGGCAGATTTAACTGGCTGGTATAACCAGAAGcactttgatatttttaatgttgatgatgtcttttaatatttgctatattgtaaatatattccATTTTGAGGTGGACCTCGACATTCTCGGCAGATCTATGTATCTGAAGATACATAGTTTAGCCTAACTGTAAATAGAAGTTTTGATGATATTGTATTGTATGGACATAAAACCGAAAccaaaatctttttgttttgcacagtTTAGAAATTCCTAGAGGCGATCAGCTACCACCCATTTTCATTTCTATCGCATTCACAATGTGTTGTAAAACAGCAATATATACTCTTAGTTAGAATGAGCCATTTGTAACCTAACTTTAAAATTTGCACTTTATTGCACTGACTGATTTGTAATAAATTGTTGTGTCAATCTATTTTTCTTGTGTCCTCAACTGAGTCTAGACGACTTTGTCGATTTGTGTAAAATTTGCTATATGGGTTTTTTCGAAACCAGAACAGATGgtctttcattttcattggaTGGTGGACGTCATACGTTCAATGAACCAACTcagaaattcaaataattttacttaatttacatgaaaacaacagaacaaGGATTGATATATTTAAGATCTGTCCAAACAGTGAGAAGAAAAAGGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253142.1 lncRNA upstream 49777 25034118 ~ 25049605 (+) False LOC122362644
TU190635 lncRNA upstream 55562 25043088 ~ 25043820 (+) True G129134
XR_006253141.1 lncRNA upstream 57198 25034118 ~ 25042184 (+) True LOC122362644
TU190626 lncRNA upstream 82398 25013750 ~ 25016984 (+) True G129125
TU190628 lncRNA upstream 98452 25000730 ~ 25000930 (+) True G129127
TU190813 lncRNA downstream 184392 25288143 ~ 25288537 (+) True G129246
TU190829 lncRNA downstream 242654 25346405 ~ 25347280 (+) False mt2
TU190833 lncRNA downstream 245005 25348756 ~ 25349038 (+) True G129262
TU190852 lncRNA downstream 336297 25440048 ~ 25442441 (+) True G129270
TU191004 lncRNA downstream 558746 25662497 ~ 25663585 (+) True G129360
XM_043216926.1 mRNA upstream 3709 25090195 ~ 25095673 (+) True c18h11orf16
XM_043264439.1 mRNA upstream 85762 25009287 ~ 25013620 (+) True rnf141
XM_043264440.1 mRNA upstream 85762 25009340 ~ 25013620 (+) False rnf141
XM_043264198.1 mRNA upstream 90918 25006079 ~ 25008464 (+) True lyve1b
XM_043264199.1 mRNA upstream 90918 25006079 ~ 25008464 (+) False lyve1b
XM_043264158.1 mRNA downstream 3364 25107115 ~ 25108935 (+) True si:ch211-218c6.8
XM_043264159.1 mRNA downstream 3364 25107115 ~ 25108935 (+) False si:ch211-218c6.8
XM_043264006.1 mRNA downstream 19570 25123321 ~ 25124789 (+) False chtf8
XM_043264005.1 mRNA downstream 19576 25123327 ~ 25124789 (+) True chtf8
XM_043264600.1 mRNA downstream 73181 25176932 ~ 25187744 (+) True trhr2
XR_006246977.1 other upstream 103432 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 511337 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 641822 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1362536 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1519580 23457100 ~ 23579802 (+) False cdh13
XR_006253170.1 other downstream 190992 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 190992 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 242654 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 793672 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 817516 25921267 ~ 26174156 (+) True G129424

Expression Profile