RNA id: XM_043264320.1


Basic Information

Item Value
RNA id XM_043264320.1
length 579
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC122362761
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19600012 ~ 19603818 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCAGGAGCTCCCTGTAGATCCATCAGTCCTGGACTCATCGATCAGCAGTCGATGGGATGAGCTGATCAGAGCTCAGGTCTTCAACGCCAtttcaaaaaatgAGATTTTCTCGACCGATGACTCAAGCAGCATCATTACCAGAAAACATGAAGTGGAGATTGAGTTCTCCTGTCGTTacgagaagaaaaacaacatctcCCTGGAGTTCACCGCACGTAGACATATAACCACCATCACCGAGAAAGGCTTTGGTACCCTCACCTACAGCTTTGGACTCTTCAGAACAGTAAACTACAACACAGAAATAGACGTGACCACATATCCAGCGGAGTATGACCTTGGAGAGATGATTTATATGCAGATCGAATCCCAATCTACGATCAACAACACAGAGCTTTTCGTTGAATCTTGTGTGGCGACACCATACAACGACCCCAGCTACCAAACATCCTACACAATCATCCAAAACGGGTGTATCTTGGATGAAACGGTTGAGTTCTACACAAGCCATCAGCCACTGGTCCGTTTCGGCCTTCAAGCCTTCCGGTTAAAAACCAATTGACGCTGCTACTGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188450 lncRNA upstream 23853 19575889 ~ 19576159 (+) True G127617
XR_006246958.1 lncRNA upstream 31527 19487570 ~ 19568485 (+) True LOC122323166
XR_006246957.1 lncRNA upstream 119791 19452530 ~ 19480221 (+) True LOC122323165
XR_006253152.1 lncRNA upstream 251533 19330322 ~ 19348479 (+) True LOC122362700
TU188406 lncRNA upstream 311466 19269663 ~ 19288546 (+) False LOC122323181
TU188463 lncRNA downstream 19195 19623013 ~ 19623282 (+) True G127630
TU188465 lncRNA downstream 22335 19626153 ~ 19626521 (+) True G127632
TU188470 lncRNA downstream 177947 19781765 ~ 19924802 (+) True G127637
TU188509 lncRNA downstream 381923 19985741 ~ 19991636 (+) True G127663
TU188679 lncRNA downstream 598930 20202748 ~ 20211417 (+) True G127766
XM_043216816.1 mRNA upstream 148801 19404321 ~ 19451211 (+) True LOC122323148
XM_043216913.1 mRNA upstream 211349 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA upstream 211349 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA upstream 211349 19382938 ~ 19388663 (+) False slitrk3a
XM_043216868.1 mRNA upstream 311456 19269611 ~ 19288556 (+) True LOC122323181
XM_043264321.1 mRNA downstream 20394 19624212 ~ 19625612 (+) True LOC122362762
XM_043216837.1 mRNA downstream 281316 19885134 ~ 19901478 (+) True serpini1
XM_043216839.1 mRNA downstream 299328 19903146 ~ 19908222 (+) True LOC122323160
XM_043216825.1 mRNA downstream 324408 19928226 ~ 19935759 (+) True LOC122323153
XM_043264324.1 mRNA downstream 334210 19938028 ~ 19940813 (+) True LOC122362767
TU188266 other upstream 758477 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 817853 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 1038402 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 1038402 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1459759 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 399186 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 482877 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 944009 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 947330 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2797156 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile