RNA id: XM_043264327.1


Basic Information

Item Value
RNA id XM_043264327.1
length 465
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC122362770
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22416782 ~ 22421246 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCAACGCGAATCGACAAAGAGGCTTGCAGAGAAGCATACAATCTGGTGCGAGACGACAGCTCAGATATATGCTGggcaTCTTTTAAGTATGACGGCTCTACCATCGTACCGGCTGGTCACGGGTCCGACTACGAAGAATTCAAGAGTCAGTGCACAGTCTTCGGGTTCGTAAGGATCACAACGGGTGATGCCATGAGCAAGCGCGCCAAATTCACCCTCATCACCTGGATCGGCGAAAACATCAGCGGACTGCAGAGAGCCAAGATTAGCACTGACAAGACACTGGTAAAAGACATCGTGCAGAACTTTGCCAAGGAGTTCATGATAAGTGATCCCAGAGAGCTGGAGGAGGAATATCTCCTTGGCGAGCTGAAAAAACGTGGCGGGGCCAACTCACGCCATGGGCCGAATAGAACTTGGGGCGGGTTTTGGGGCATTTTTGTAACTGTAGTTTTTGAATGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189448 lncRNA upstream 4831 22409487 ~ 22411951 (+) False LOC122363143
XR_006253188.1 lncRNA upstream 28167 22387599 ~ 22388615 (+) True LOC122363071
TU189419 lncRNA upstream 306324 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 347829 22033671 ~ 22068953 (+) True G128318
XR_006246944.1 lncRNA upstream 581761 21694446 ~ 21835021 (+) True LOC122323089
TU189506 lncRNA downstream 113220 22534466 ~ 22535424 (+) True G128377
TU189508 lncRNA downstream 115529 22536775 ~ 22543533 (+) True G128379
XR_006253163.1 lncRNA downstream 117136 22538382 ~ 22539282 (+) False LOC122362809
TU189509 lncRNA downstream 117783 22539029 ~ 22539895 (+) True LOC122362809
TU189515 lncRNA downstream 129199 22550445 ~ 22551614 (+) True G128385
XM_043265105.1 mRNA upstream 4825 22400944 ~ 22411957 (+) False LOC122363143
XM_043264964.1 mRNA upstream 17546 22374588 ~ 22399236 (+) True LOC122363070
XM_043264962.1 mRNA upstream 29730 22374588 ~ 22387052 (+) False LOC122363070
XM_043264963.1 mRNA upstream 29730 22374589 ~ 22387052 (+) False LOC122363070
XM_043264010.1 mRNA upstream 154813 22241472 ~ 22261969 (+) True LOC122362522
XM_043264382.1 mRNA downstream 31200 22452446 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264380.1 mRNA downstream 31201 22452447 ~ 22467259 (+) True si:ch211-260p9.3
XM_043264381.1 mRNA downstream 31201 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264383.1 mRNA downstream 31201 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264386.1 mRNA downstream 31445 22452691 ~ 22467259 (+) False si:ch211-260p9.3
TU189467 other upstream 9800 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 1860155 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1867464 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2329201 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 2402996 20003004 ~ 20013786 (+) False wdr59
TU189495 other downstream 13560 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1035854 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1303390 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2028519 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 2162599 24583845 ~ 24588045 (+) False LOC122323037