RNA id: XM_043264342.1


Basic Information

Item Value
RNA id XM_043264342.1
length 5955
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC122362789
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17937030 ~ 17969461 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAGGGTGGGGACAAACAGCTGGAAATGACTGAGAGGCCTTACAGATAGTTTGCGCTTTTGTTGCTGCGGCCTGCGTTTGCAGAGAGACTCCTATCTGGAAGCACATTTGTTTCCGTTGTGAGTATTAACTACCTCAGGCACCGGAAACCGATCAAGAGGGAGCCCGGCGATCTCTCCCGTCAGCTGCGTCTGTTCACTCGGCCCCAGCCGCACTTCTGACCGACTGGATCCGTCAGAGAGCGGCACAGGCCCCCGCGTCCGTGCCAAGGCGACGTCACCCCGCGCTTTTCCTCTCCCGAAAATTCACGCCGTTTTTCCGTCGAgagatttttaagatttttctatttttactagAGGCCTACGGAAAGCGCTTTACGGGAAAAAGAAGGGTTTTTCGCTTCCAATTGAAGGATTGATTATGCACTTTGGATTTTCGTCCGGGATTAAAGCTACGTCGTTTTCACCTGTGCACCAGTACTGAGGGGAAACTAACTTTCTGTGGGATCTTTTGACGTTTTTGCGCAAACATTTTGATGTGAGCTGCGTCCGGAGCTGCAGCTGGGCTGCAAGATTTCCTCGAAGCTTCCTTTTGCGCCGCTCTCTAACTCTCTGGAGCGGGATACTGTCATGACTTCCCCTCTGATGGGATCTTTAAGCTATCTATTTACTTGATTCCAGGAGTCCCGAATTAGGCATCCAGAACTCATTCGAAGGTGAAGGACCGACACTCCCTGGGCGCATTGAATACTTATGTATTGTTGCAGTGCACAAGAAAGTAAAATGGACTACAAGCTGCGCTTTTTGCTTGGCGGGTCCAAGCACAAAGTGCAGCAACACCAGCAGTTCCAGTTGCCCGAGCTCAGTCGGACCCTCAGCGCCCCGTTGGGCTCTTCTTGCTCCACCCCTTCTCCCATGGCGACCATTGGCTCCTCCCCTTCTGGCTGCCACGCCCCACCTCCGGGCGCCACCACGGCGATCGCGGACATCCAGCAGGGCATCTCTAAATACCTGGACGCTCTGAACGCGTTCTGCCGCGCAAGCGCGTTCCTCACCGAGCTCTTTGGCAGCGTTTTCCGGGATTCGCGTTACTCCAAAGCAGCTATGCAACTGAAGGACGTGCAGGAACATGTCATGGAAACGACCAGCCGGCTCACCACAGCAATAAAGCCAGAGATCGGCAAGATGCTGATGGAGCTCAGCGCAGGCGCGGCTAACTTCAAAGACCAGAACGACTTCAGTCTGCAGGACGTTGAGGTGCTGGGCCGCTGCTTCCTGACGGTGATGCAGGTGCATTTCCAGTTCCTGTCCCAGGCGCTGCAGAAAGTCCAGCCGGTGGCGCAGTCTTGTCTGGCCGAGGCACTGGCGCAGGTTCAGGAGAGACACGGGAACGCTCACACACAGAACACGAGCCCTGGGCCCCTGACGGAGCTGGAGGAGGCCGTCCGCTCGTGGAAGGGAGCTTCAGAGGTGACGGCGTGTCtcagggagagagggagagacggCTGTCTGTCTGGCATTCAGGTGCAGCAGCTCTTCTGTTCTCAGAACACCTCCATACCTGAACACCAGCTCAAAGAGCTCAACGCCAAGATCGACAACGCTCTGCAGgcgTATAAAGTGGCGTTAGACTCTTTGGGTCACAGTGAATATGCTCTGAAGGCCGGATTTCACCTTAATCCCAAATCAGTGGAAGCAGCTTTGCAGGGCTGCTGTAGTGACGCCGAGGCCCAGCAGGCCGGACGCTTTCACACCACGTCTCAGCCCATCCAGTGCGAATTACCCACAATCCCCGTCCAGATCGGCTCTCACCTCCTCCGGGGAGTTTCCTTCAATGAAAGCGCGTCAGATAACCTCAAGCTGAAAACGCATGCAGTGCTGCAGCTGATCAAGGATGCGGTGGATCAGAACGGGGTGGCCGTGCGAGATGATTCTCCCGTCACCGAGGTGCTGAACCAGGTGTGTCCCTCCAGCTGGAGAGGAGCCTGTAAGACGGCCGTTCAGCTGCTGTTTGGACAGGCTGGACTGgttGTCGTTGACACCGCTCAGATTGAGAATAAAGAAGCTTACGCCCCTCAGATCTGTCTTGAAGGATCTAAAGTTGTGATTCAAGTGCCATCTACATGGTGTCTGAAGGAGGATCCAGCGACAATGTCTCTGCTGCAGCGCAGTCTGGATCCAGAGAAGACCCTCGGTCTGGTGGATGTGCTTTACACGGCCGTGTTTGACCTCCAGCGCTGGAAAGAGCGCAAGGAGCACGCTTTGCCCACCATTCAGATCCAGCTTCAACGTGACACGACTGAATACTGCGGCCCCGTCGATCTCCCTCCGGGGAACAGCACCAAATCCTCCGGCGGCCTCCCCAAAACCATCTCCAAACTCACCTCACGCTTCACCAAGAAAACCTCGTCCAACTCCAGCGCAGGCGGCAGCTACTCCATCCCCAGCACCCCGTCTCGGAGCAGCGGCAGCTCGGACGACAAATCCAGCCGCCTGCACAGCCTCCTGCAGATGAGCAGCATGCCCTGCACGCCCGACCCCAGCCACGGGCAGATCGCCAACGGAGCGTCTGCAGACGAGCAGGGCATGAACCTGCCCACCGACCAGGAGATGCAAGACGTCATCGACTTCCTGTCGGGGTTCAACATGGGGAAGTCGCAGCAGGCGTCTCCGCTGGTGAAGAGGAGGAACTCGGTGGCGTCTACGAATGCGGCTGACTTGAAGCCGCCCAGCGGCGCTGCTCCGCCCCCTTCGCAGTCTCAAGTGTCTCAAGTGTTGGTGCAGACTTTGCAGCAACCgacacaacagcagcagcagcagcagcagcaacaacttCCTTCAACgccaaaacagcagcaaacGCAGCCGCAGTCGCAGCCGGCCTCGCAGACTCTGCCCTTCTACCAGCATCTCTTGCAGCCGATCGGTCAGCCGCAGCAAACGGCGCCGGTTTCCCCGCAGCTCTCTTCCCAGCAGCCTCCGCAGCCGAGAGCTCCCAGCAAGTGGCCCCAGGGGCCTTTAGGGGGCCTCTCTCCCATCGGGCCCTTGACGCAGTGGCCGGCCCCGGGCCTGCCGGACCTCAGCTCTGACCTCTACAGTCTGGGGCTGGTCAGTACGTACATGGACAGCATGATGTCTGAGATGCTCGGCCACAAGCCCCCGCAGGGACCCCGGAACAACACCTGGCCCAATCGAGACCAAAGTGACCAGAGTCTGTTCGGGGTGTTGGGAGACTCCATGCCCTTCGACCCTGCAGtGGGCTCAGATCCAGAGTTTGCGCGTTATGTTGCCGGGGTCAATCAGGCCATGCAGCAGAAACGGCAGGCGCAGCATGTTCGCCGGCCCAGCAACACCCGCAGTAACTGGCCACACCCAGAAGAGCAGCACCGGAGCTGGACACACCCAGAGTACTACAGCGAGGGGGAGGCGGTCAACAGCGGCTGGTCAGCCAATCAGGGGGATTCGGCCAGTTCAAGTGACGAGACGTCCTCAGCCAATGGGGACAGTCTGTTCTCCATGTTCTCTGGGCCCGACCTGGTAGCAGCTGTTAAACAAAGACGgAAACACAGCTGTGGTGAACAGGAAGTGTGCACGTTGCCCTCTCCTCCGCTCCACCACGCAAGTGACGACAGTAACCAGGACAGCAAAACGAAAACCTGGCCCCCTAAAGCCCCCTGGCAGCACTcctctcacacaaacaccatGCCCAATCCCAGCTCTTCTCTCTACCAGATGACCATCCCCTCCAGCCAATGGGGCGATTCCATGCAAATGCTGCAGTCTCCAGTGTGGTCGACGGCCAATGACTGTCCTCCATCCTCTGGGATCACCTCCGGCTTCCCGttcacacaacaacaacaacaacaacagcagcagcagcagcagcaacagcagcagcagcaacaggtTTCCCAGCACAAGATCCTGAGCAAAGGCTTCAAAACCTTCCCGCTCAAACCCGAGCATCGACCCTCGTACCTGCACCAGTACTGAGCTGGACCCGTGCTGGTAGAGGTCGCTGACcctttttgcatattttgagTTTGAGTAATGCTCAGGATGTAAACCTAGATCAGCATTTAAAAGGCTTTGAGTTCAGAGCCCAAACGGGATGCCACTTAGAGAGACTTTATAAAGGGGTTTCGGTCGCGTCAGGGCAGCGGAaggatgttattttattatggaAACACGGCGCCGTAGAAATCTAGCTGGGATTGTTCATCTTGTGGTGTGCCGTGAACCTGGTCTAGACTCCAACCTTGTAAactagaagtgtttttatagAGAAATTTGCATTTAACATAGTggttaataacatttttgtacaCAGATGCGTGTCAAACGTCCCCAAACAGAACGTAACTGCCTTCCACGCTGTCCAAAACGATGCATGATTCATGTTAACAGCAGCTAGTCGGACCATTTCACTGGCGGCACGACTGAAGCCTTCAGTCCCGTGGCGGCGTTCGGCTTTGAGTTTACACGACTTTTTCGATATGCATGGCCACCGTGCTCACTCACAGCGCACTATCGCAGCCGCATTGCGAAGATCTGGACGTCCCACATAACGATACTGTGTCTAAATAGCTGTAACTGCCAAATGTCACGTGGGACGACCCAGACTGCAGCTCTCAGCTACTGTTCCATAGCTTGTAAATgactcaaaaaaataaaataaaataaaaaaataaataaaaaaaagaaacaagaagaactataaataatttactttttatgaagAGGCTTTGAGCAGGCTCGGcagaaatataataatcataGCAGAGGTGTAATTTGAAAGAAATACACTACTTTTTCAACATCTAAGAGATaaagcaaacaacaacaaaaaaaaaaagattaaaaatacaaataaaaaaaaggatgttaGCAGTAACTTTGTGCCATGTTGTTTTGAATAGCACTTGCAGATATTTTCTCTAACCAAAGTATTGTTTAGAGGGGGGAAAtggtgctttaaataaaaaaaaaaaaatgcagtttgggAGCCGTAGTAGTAGTTCTATCTAGAAAAAGAAAaccccttttattaaaaaaaacaaacccttcTGTACGGTCACATGTGTTCATTTTCCCATTGGCTTTCTTCAGAACGACACTAACACTtcccataaaaataacatgtattcctttcaaatatatatttcttgtaCAAATATTGACAGtattaatcttatttttgtattttcttacACATTATACCATTACTCTATAAGTTAGCGTAATATAGGCTTATtaagtaaaacattattttcccaAGATGTGaagcacatttttcttttttttcctttcctacAGAGTTTAACTGTATCTTCTTTCTACAAAGGTTACCAAATACGCCAttataaacactaataaatggtTACAGTCGGattggggtgttttttttttcttcttttggttATTTTGAGCCCAGATTCCCGTTGGTTTCTGTGGTTCCGGGCTGCATCTGAAAAGCCCAGAATGTTCATTTCGTGACGTTTGCCGATGCCAATGTTGCCTGTATTTATGATATGACCATGTTTTCTGAAAACTAACATACTTACCATGTTTACAGAGAATCGTttgctgtatataaatatatctttttatagTTCTGTGCTTTGCACAATCAAAATGTAGGTTCGTTGCTTCGTCTGTGTTTTTCTCCCAAACTGTTtcggcatttttttttttttttcctttctttttttaagattaaacaTCTTCAATGACCTTGGACTGTAATGCTCAACATTTCTCAGCTGTGTCAAAATGGTTTACTAGTGgcttcaaaaaataaaaggagtttaaaaaaaaaaataaaaagaaagaaatgttgcCCTGACCGAAGACATGAGGGGTGACTGCTTGGCTTATGTTGCTTATTGTTCACTAGAGCTGGCAACTGATTATTTCCAAGTGTACCAGcgatgcaaaaaataaatatataacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187874 lncRNA upstream 3265 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA upstream 3265 17929468 ~ 17933819 (+) False G127233
TU187898 lncRNA upstream 78935 17857012 ~ 17858149 (+) True G127243
TU187896 lncRNA upstream 81273 17854650 ~ 17855811 (+) True G127242
TU187894 lncRNA upstream 85371 17818738 ~ 17851713 (+) True G127240
TU187928 lncRNA downstream 3089 17972550 ~ 17974502 (+) True G127263
TU187939 lncRNA downstream 8214 17977675 ~ 17981341 (+) True G127268
TU188151 lncRNA downstream 382279 18351740 ~ 18352103 (+) True G127413
TU188170 lncRNA downstream 516396 18485857 ~ 18487271 (+) True G127431
TU188173 lncRNA downstream 522536 18491997 ~ 18518461 (+) True G127434
XM_043216610.1 mRNA upstream 19816 17887967 ~ 17917268 (+) True LOC122323000
XM_043264449.1 mRNA upstream 49877 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA upstream 49877 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA upstream 49877 17884361 ~ 17887207 (+) False sdr42e1
XM_043216687.1 mRNA upstream 160107 17769771 ~ 17776977 (+) False pigb
XM_043264208.1 mRNA downstream 14017 17983478 ~ 18070581 (+) True LOC122362666
XM_043264985.1 mRNA downstream 307903 18277364 ~ 18334482 (+) True pepd
XM_043264104.1 mRNA downstream 369682 18339143 ~ 18343857 (+) True ugt5f1
XM_043264106.1 mRNA downstream 369738 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA downstream 369739 18339200 ~ 18386930 (+) False LOC122362573
TU187918 other upstream 8919 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 8919 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 49873 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 124917 17808674 ~ 17812167 (+) False G127239
TU187698 other upstream 525491 17410866 ~ 17411593 (+) True G127098
TU187968 other downstream 169074 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 590905 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 590905 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 808307 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 808307 18777768 ~ 18782159 (+) True G127500

Expression Profile