RNA id: XM_043264380.1


Basic Information

Item Value
RNA id XM_043264380.1
length 5110
RNA type mRNA
GC content 0.43
exon number 32
gene id si:ch211-260p9.3
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22452446 ~ 22467259 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTATGCCACAGGATGTGATTTTTCTCAAGAATGGTTTGGACAACAACCGCTACATGTAATTTCTGCTGGTAATTTCTTTGCGCACCAAAACTGGAAGGCAAATGCAGTGATGGTGGAAGGCAGTGATCTGACGGAGAATGAGAGGAGACGGGTTATTGAGCATCTGCAGACGGGGACTGAGATGATGGTGTATCAGCAGAGGGTTGAGAGACTCACTGTCCAGGTCATTAGAGAGAGCACGCAGATGGCCTTGATCCGCTCTGACGACAAGATAGTCCGAATGTTGGACATTTTTGAGTTCAAGGAGGTTCGCCAGTGGGAGACATTCAGGGACTTCCAACAATTTAATGAAAGCAGGGGGAGTAGATTTCGGAGAATCTTTTACCAATCTGAAAAAGAGCTTCAGCAGGACAGCAGAAAGTGTTTGACTATCTTCTATGGAtctgagtttattttaaaatcgcTGAGCCTTAAAGCTGATTCAGTGGAGGATGCAGAAAGATGGCTGACAGGACTGGAGTTACTCAGACAGGAGACACCGGCAACTCACACACCAGAGATTGTAGAAAGTTGGCTGAGGAAGCAGATGTACTCTGTTgatcaaacaaagaaaaacagCATCACCCTGAAAGAGCTGAAGTCTCTGTTGCCACAAATGAACTTTAAAGTACCAGGTGGACGTTTTCTGGAGGACAAATTTGTGGAGGTGGGAGCAAATGATTATTCCCTGGACTTTCAGCAGTTTTCTAAATTCTACAatctattaatatttgaaaaccaGAAGATGttGCTAGAAGAGTTTGAAAAGGGGCCTGCGGCTTTTAAAATAAGTAATACTGATAGTCCTGAATCTTCTGTAGTTTCCCTCTATGATTTTCATAACTTTCTGTTATATCGACAAAAGGATACCTGCGCCAGAAATGTTAACCAGGTTCAGGAGCTGATGACCATTTTCATCGAAGACACCATAAGGAAGACAATAAATCCAACACTTACTGTTGGAGAGTTCCTCAGTTTTCTCTTCTCCAAAGAGAACTCAATCTGGGATGAGAAGTTCTCAGAGATTTGCCCACTGGACATGAACAATCCTCTTTCTCACTACTGGATCAACTCTTCTCACAACACatATTTGACTGGAGATCAACTGTGCAGTGATTCATCGATAGAAGCTTACGTGCGCTGCCTGAGGCTGGGGTGCCGCTGTATTGAGTTGGACTGCTGGAATGGTCCAGAAGAACCTGTCATATACCACGGACGGACCATGACCTCCAAGATAAAGTTTAAGGATGTGGTGAAGGCCATCAATGATCATGCTTTTATAACATCTGAGTATCCTGTGGTGCTGTCCTTAGAGCAACACTGTGATAtcaaacaacagaaaatgatGGCACAGATCTTACAAGATATTTTCCAAGACAAGCTTCTGACCGAGCCGCTGGAACCAGAAGCAGAAGATCTACCCTCACCAAACCAGCTGAAGGGCAAGATCATCATTAAGCACCAGAAAATAACAGAGAGCGATCAAACAGTTAAGCTagaagaagaaagaggaaaCACAGCTGTGAAGAGAAAATTAGACAGCTTCAAGAAAATCGGAAACTCTTGCAGGGAGAAGcAGATAAGAAAAGCTAGAGAAAACCGTGTAGTGGAGAAGGAAGGAGAGCTTTGCATCTGGGATCCAATAGATAAGaGGTTTTACAGGCATGACTGTGTGATCTCAGATAATAAGCTGTACTATTCTGAAGAGAAGTGGAAGGAAGACAGTCCTGAGAGCGACTCAGAGCTGCACCTGTCAGAGCCCTGGTTTCATGGATTTCTGGCTGAAGGCAGAATAACTGCAGAAAAACTCTTGCGCGATTTCTGTCAAGGCAAGAATGGAAAAGATGGAACCTTCCTGGTGCGAGAGAGTGAAAAGTTAATCAGAAACTACAATATCTCCTTGTGGACGAACGGGAGAATTCAGCACTACAGAATCTTCTGTTCCTCACAGAATGGCCAGTGGTCTTTCTACTTGACATGCAAGCAGCTCTTTCCGAGTATGTGTGCTTTGATAGAGTATTACACACAAAACCTGATCAAGTATGATGGATTAAATCTGCGCCTCAGCGGTTTCCTGCCTCGACTCAATTTTGTGCCTCTCCGCCATCTGGGGTGGTTTTACAGTAACCTGAGCCAAGCTGAAGCAGAAGACTATCTCCTGAGGATCCCTCGAGATGGAGCCTTCCTAATCAGACAAACAGAAAAGCCTGACACCTTTACCCTTTCCGTCAGATTTGACGGGGATGTCGAACATTATCTGATTTACCAATACAACAGCAAGTATGTGTTGACAGACGCCTACGAGTTTGGCAGCCTTGAAGACCTGGTTAGCTGTTTTCGTCGTGAGCTTTTCTACGGCAAGACAAAGCTACGCTACCCCGTAACGCCACAGTTAGCGGCGCGCTTCTGTTTGGTGGATCTCTCAAAGTATGATTATGAGCAGTACAGTGAAGTTTCTAAAGACAATCCTTTAGGCGACCAGTGTAAAGGTGTGGTGGACATCTCAAAGTGTACTGTTGCTTGCAAAGCCAAACATGCCAGGCCCCTCGTGGTGACCCTTTTAAACAGGGAGAGTTTTAATCCAACCGAGTTCACTTGTGAGAACGTGGAGCAGGTGGATGAATGGTACCAGGCGCTTCTGAACATCATCCAAAACGAGCAGAGTTTGGAGAAAGCGAGAATAGCAGAAATGGaatccaaaaccaaaatagctGTTCAGATGTCAGATATGGTGATATACTGCCAATCTATCAAGAAAAAGACTTTTGAAAATTACAACTACAAAGAGGTGCGTTCCGTTCCGGATAACATGGTTCCGAAAGAGGGGAATGAAACCGCGGTGGAGAAATCAGACAGCATTTTGGAGTATAACCGCAAAGCGGTGACCCGTGTGTATCCCTGCAGCGGGCGAGTTGATTCCTCCAACTTTGATCCTTGTCCTTCGTGGAAACTAGGCTGCCAAATGGTGGCTCTTAACTTCCAAACTGCTGATAAATTCATGCAGCTGAACGGCGCTCTCTTCAGTTTGAATGGAGGCATGGGTTATGTGCTTAAACCAGAGTGGATACGAGATCCAGCCAAGAAGAAACCTGCTAAGCAAAGCATCATAATTCGAGTGATGGCAGCCAGGCATCTGCCCAATCCAGACCACATCGTCAGTCCTTTCGTGCAGGTTGAGCTGTGGCCGTACACGGGAGGTCAAGCAGACGACTACAGTTTCAAGACTACCCTCTTTAAGGACAATGGACTGAATCCGGTGTGGCTGGGCCCAATGAATCCAcccaaatgctttaaaatagaCGAGCCAGACCTGGCCTTCCTGCGCTTTGTGGTTTTTGAGGAGGACACATTCTCTGATGCTAAGTTTCTTGCACAAGCCACTTTTCCGGTTAGAGGTGTTCGCTCAGgGTATCGATCTGTCCAGCTGAagaacaggtgcagtgaaaacctGGAGCTTTCGTCTCTTCTGGTGCACGTACAGCAGCTGGAGGTGTAAAGCAAACAGCCTTAACCACAAGGAAGTTGCAGACGTGTCAATGTGGATATGGTGAAAAGGAGGACACTGTTTAGTCTTGgtctgtttttggtttttttttgcaagctaCATTCCAGATTCTGGATCATAAATTATCAGGAACGCAGAGCAGTTACTGTGATACTGAGATCtaaataaactgtatatatattgcataaaaatgtgtgGATGCGTTCACATGCTATTCCTTTTCCCTCTAATGGTTTCATAACATATCAAGTTCCATTTCTGAAGCAAATGACTGTTAATAAAGAAGCTCTGAAAGCTTTCTATTTGAAACAAATTCACAGACAGTTTATTTCGATTGAAACTGGTTCACATATTAGGCTTATTTTCCTGTTGAAATTTGTGTTCTCATTACAACAGCcacagagcagcagcagcagcagcaacccAGCTGTAGATAgaagcagaaaaacacagaagaaataagaaataagggCAGCAGTTCTACCTGCAAAAACTCCGGGAgttatgggaaatgtagttcattCTGTATGTACACAACTGTGCCACAGGGGCCGTTCGGACCCCGCCCACATCAGATTAAGACTCTGTCTCAATTTAGCAATCGcaaaaagcacttaaaaaaataaaataaaaaaagctgaaagtAATGAGACATTATAATATGTTGAAAAGGAGACATTGGAAACACAAATAGCACAGTGAGTTCCACAGGATATTACAAATTAATCAGGAAACAGTTGACTGAAGTACAAACTGGATTTCAGCTTCAATAGATTAGCCATTGTCTTTAAGATATGGcgcttttttttgtataatttggTAACAAAATGAAGGCCGAGGGAAACCCAGCCCCCTGAATCCTTCCCGCCAGAGAAAAATGGTCCGCTTTTCGGACTAAAGACCATTACGATGTATCAGCTTGAGTTTCACCAGTGTACAGAATGGCACAGTTTCTAGTCCACCTTAATAACACATTCCCAATGTAATCCATCGGTTCACACCAACTCTGTCCATCTTTCACTTTTAGAAACGCGTATTGATCCGTATGGAAAGTGGTTGAAGGGGCTAGTGATTTTACCCTTTAAGTTAAATCTATATGATTAAATGGCTAACATGCGAAAAGAAAAAGCGAAAATGGATTAAACTTATCATAcagtcaaaaaaacaaagaacacaACGACAGTGCACTCGGTCTGGGGATGGGAAAGGAAACGAAAACAGGCGACCGTATGCACACatctaaaaaagaagaagaagaagaaaaaaaaaggcaacgAAGTACGAAGTAGAATCTCCCAAAACCTTGAGagaaataaacaggaaattATATACACTAATATGTACATTATACAGTATGCAACTATGCAAGATGGCAGAACACGAGTTGGTGCCATTATGGCACCCAGTACTGTATGCCCCCCTCCGGACGGCATCTATATCTGTGTGAAatcaaacgcacacacaaaagCTGGAACTACCGAAAACTGCTATGTTCAAGACCTCTCTCTGGATATAGTTCAACGTGGGAGTAGCGACAGACACGCCTTTGTAAACATAAGAAAAA

Function

GO:      GO:0044763

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189448 lncRNA upstream 40496 22409487 ~ 22411951 (+) False LOC122363143
XR_006253188.1 lncRNA upstream 63832 22387599 ~ 22388615 (+) True LOC122363071
TU189419 lncRNA upstream 341989 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 383494 22033671 ~ 22068953 (+) True G128318
XR_006246944.1 lncRNA upstream 617426 21694446 ~ 21835021 (+) True LOC122323089
TU189506 lncRNA downstream 67207 22534466 ~ 22535424 (+) True G128377
TU189508 lncRNA downstream 69516 22536775 ~ 22543533 (+) True G128379
XR_006253163.1 lncRNA downstream 71123 22538382 ~ 22539282 (+) False LOC122362809
TU189509 lncRNA downstream 71770 22539029 ~ 22539895 (+) True LOC122362809
TU189515 lncRNA downstream 83186 22550445 ~ 22551614 (+) True G128385
XM_043264327.1 mRNA upstream 31201 22416782 ~ 22421246 (+) True LOC122362770
XM_043265105.1 mRNA upstream 40490 22400944 ~ 22411957 (+) False LOC122363143
XM_043264964.1 mRNA upstream 53211 22374588 ~ 22399236 (+) True LOC122363070
XM_043264389.1 mRNA downstream 30998 22498257 ~ 22524172 (+) True LOC122362804
XM_043264390.1 mRNA downstream 116658 22583917 ~ 22622188 (+) True LOC122362807
XM_043264819.1 mRNA downstream 155865 22623124 ~ 22636865 (+) True LOC122362983
XM_043216753.1 mRNA downstream 200938 22668197 ~ 22762542 (+) True tmtc2b
XM_043265061.1 mRNA downstream 350098 22817357 ~ 22849043 (+) True bicd1a
TU189495 other upstream 13768 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 45465 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 1895820 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1903129 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2364866 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 989841 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1257377 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1982506 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 2116586 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 2528512 24995771 ~ 24995950 (+) True LOC122323238