RNA id: XM_043264390.1


Basic Information

Item Value
RNA id XM_043264390.1
length 2554
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC122362807
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22583917 ~ 22622188 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTTCAACAAACCATGTTTGGTTCTTTTTGTTCAGAGATCCGAGCCCAACTGGTGGAACAGCAGAAATGTCTGGAGCAGCAGACGGACATGAGGGTCCAGCTCCTTCAGGACCTTCAGGACTTCTTCCGCAAGAAGTCCGAGATCGAGATGGAGTACTCGCGCAACCTGGAGAAGCTCGCCGAACGCTTTATGGCCAAGACCAGGAGTACCAAGGACCATCAGCAATATAAGAAAGACCAGAATCTGCTGTCTCCGGTCAACTGCTGGTATCTGTTGCTGAACCAGGTTCGACGGGAGAGCAAAGACCATGCGACTCTGAGCGACATTTACCTGAACAACGTCATCATGCGCTTCATGCAGATTAGTGAAGACTCCACGCGTCTTCTGAAAAAGagTAAAGAAATCACCTTTCAAATGCAAGAGGATTTGATGAAAGTCCTCAACGAGCTCTACACGGTGATGAAGACGTATCACATGTACCACACGGAGAGCATCAGTGCAGAAAGCAAACTGAAGGAGGCTGAGAAACAAGAAGAGAAGCAGTTTAGCAAGTCTGGAGACCTCAATGTCAACCTCCTGCGCCACGAGGACAGACCCCAGCGCCGCAGCTCGGTCAGGAAGATTGAGAAGATGAAGGAGAAGAGACAGGCCAAGTACTCAGAGAACAAGCTGAAGTCGATCAAAGCTCGGAACGAATACCTGCTGACGCTCGAAGCCACTAATGCTTCAATCTTCAAGTATTACATTCACGACTTGTCTGATTTAATAGACTGTTGTGATCTGGGATATCATGCCTCTCTGAACCGGGCTCTGCGGACCTACCTCTCAGCTGAATATAACCTGGAGACGTCTCGTCACGAGGGCCTGGACATCATTGAGAATGCAGTGGACAGTCTGGACCCCCGTAGTGACCGCCAGCGCTTCATGGAAATGTACCCTACCGCTTTCTGCCCGCCTGTTAAATTTGAGTTTCAGCCACATATGGGAGATGAGGTGTGTCAGATCACGGCCCAGCCTCCAGTGCAAGCAGAGCTTCTCCTGAGGTTCCAGCAGCTTCAATCTCGTCTGGCCACCCTAAAGATCGAGAACGAAGAGATCAAGAAGACCTCAGAGGCCACTCTCACTACTATCCAGGACATGGTGACCATCGAGGACTATGACGTGTCTGAATGTTTTCACCACAGCCGCTCCACTGAATCAGTCAAGTCCACCGTGTCGGAAACCTACCTCAGCAAGCCGAGCATTGCCAAGAGACGCGCCAACCAACAGGAGACGGAGCAGTTCTATTTCATGAAGTTTCGCGAATATCTGGAGGGCAGCAATCTTATCACTAAGCTTCAGGCAAAGCATGATCTGCTGAAGAGGACCCTCGGTGATGGTTACCGGCCTGAGTATGCAActacaagCCGTGGACGACGGAACTCACACACAAGGCACCAGGactCTGGACAAGCAATACCGAGAGTTGTTGAGAGCTGTATTCGATTCATCAATCTGTATGgCCTTCAGCATCAAGGAATATTCAGAGTGTCTGGATCTCAAGTTGAAGTCAATGATATCAAGAACTCTTTTGAGAgaggtAATGATCCTCTGACAGATGAAGAGAATAACCACGATATCAACTCTGTCGCGGGAGTTTTGAAACTCTACTTTCGAGGTTTGGAGAACCCTCTGTTTCCAAAGGAAAGGTTTAGTGATCTCATCTCTTGTGTCAagaTGGAAAATATGACAGAAAAAGTAGCGCAGATAAAGATCATAATCTCGTCCTTCCCCAGACCAGTCATCATAGTGATGCGGTATCTCTTCGCCTTCCTTCATCATGTCTCTCAGTACAGTGATGAGAACATGATGCAGCCATATAACCTGGCCGTGTGCTTCGGACCCAGTCTGCTCAGAGGGGTGGAGATGGGTGGTGATGAAGTGACACTGGCACCTCAGATCAATGACCTTGTTAAGACAATGATCATCCATCATGAGAGCATTTTCCCTGGGCCTTCAGAACTCCCGGGCCCTGTCTATGAGAAATGCATGACTCTAGAGCAGGAGTACTGTGAACCTATAACAGAAGAGGGCGAGGGAGACACTGAACATCTCCCCAGTGAAGATGAGTGGGAGGCTGTGGCCATGTTTGATTATGTTGCACGCTCTGCAGCCGAGCTGTCGTTCAAGCAGGGTGACCACCTCCTACTACACAGCAAGGCCTCTGCTGATTGGTGGAGAGGGGAAGTAGGAGGAGTAAAAGGCCTGATCCCCCATAAATACATCAGTGTGGTAGAAGGGTGAGAAATAACTTCACTATAAACTGGATGAACTTCCTTCAAACATTTCGTGGATATTACTATTAGAGTAGCTCTGTTTTAAAACTTAGTGAAGGTTTTCTTCACacaatgtttatgtatatatttttatatatgtatacacacacacacacacacactgggtgAAATAATCTGTTACACTCAATATACTCAGTAATGAATTTTGCCTCTATGGACAACTCATTAGGTTTTGCAACAGAGCTAATGAGTACAATTTGCTAACCAAAACAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253164.1 lncRNA upstream 20713 22560391 ~ 22563204 (+) True LOC122362810
TU189515 lncRNA upstream 32303 22550445 ~ 22551614 (+) True G128385
TU189508 lncRNA upstream 40384 22536775 ~ 22543533 (+) True G128379
TU189509 lncRNA upstream 44022 22539029 ~ 22539895 (+) True LOC122362809
XR_006253163.1 lncRNA upstream 44635 22538382 ~ 22539282 (+) False LOC122362809
TU189576 lncRNA downstream 319394 22941582 ~ 22944126 (+) True G128431
TU189596 lncRNA downstream 371910 22994098 ~ 22994341 (+) True G128451
TU189598 lncRNA downstream 373563 22995751 ~ 22996031 (+) True G128453
TU189600 lncRNA downstream 375576 22997764 ~ 23001633 (+) True G128454
TU189604 lncRNA downstream 380247 23002435 ~ 23002655 (+) True G128458
XM_043264389.1 mRNA upstream 59745 22498257 ~ 22524172 (+) True LOC122362804
XM_043264386.1 mRNA upstream 116658 22452691 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264819.1 mRNA downstream 936 22623124 ~ 22636865 (+) True LOC122362983
XM_043216753.1 mRNA downstream 46009 22668197 ~ 22762542 (+) True tmtc2b
XM_043265061.1 mRNA downstream 195169 22817357 ~ 22849043 (+) True bicd1a
XM_043265063.1 mRNA downstream 195169 22817357 ~ 22849043 (+) False bicd1a
XM_043265062.1 mRNA downstream 195169 22817357 ~ 22847451 (+) False bicd1a
TU189495 other upstream 145238 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 176935 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2027290 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2034599 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2496336 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 834912 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1102448 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1827577 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1961657 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 2373583 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile