RNA id: XM_043264491.1


Basic Information

Item Value
RNA id XM_043264491.1
length 1933
RNA type mRNA
GC content 0.52
exon number 10
gene id si:ch211-216l23.2
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25457998 ~ 25464103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAGAAATACACTTGTTCTTTGAAAGGAAGTCAGATCGAGTGTGTTGCAAGTGTTTTGCAGGCATCTTTGAGCGTAAATCGCTATTATCCATAATTGTTTAAATCTGAACGAGTCTCAGTATGCACTGATCTCGCCAGAAATGAAATAACGTATCAGCAAATTCATCACGATTCACAGAGCAGCAGGACTGCAACCGAGCATCTGCGCAGAAGAAACACGATGTCGTCGTGGTCGAAGAAAGCTGGGGGCAGACGACCACCACCAAAACACAGCGGAGGAAGTGTCTCAAAGCCTCCCAGACCTTTTCGAAGAACGCCCTATCCGATGAGGGAGGACAGAAAAGATGATCATCCAGAATCTGAGAGCTTTGAGAGCTTAGATGAAGGGATTGACTACTCTGGCACTGCAGACTATGAGCTTTCCCCTCATCAGTCAGCCGCCGTTTCACCTGAAGAATACGAGGCAACGGTTCAACGCAATGCTGTATACGAGAGGTTCTTCCAGCAACTGCACGGAGACGCTGCTCGACAGCCCGCGGACTGTGTTGTCCTGTCAGTGAACAACCAGAACGTGGATTACCCCAAATCGATAGGCCAGTGTTTGCAGGAACGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGGTGGAATCAGGCCTGACGCGGGCCCTCCAAGATGTCCGCTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACACTCTCCTCGTGCACAGTAATCATATTTTCAGAGTCCCTCAAAATTCATCGAAATATGCCCAAAGAACAGGCCATGGAGTTTGTGTTGGTGGAGTTCAGGCGCTTGAGCGGTTCGCGGCGGGTGCTGGACCCCACGGAGGCTGCGGCACGGGCGGCTGAGCTGACGGAGGACTACCTGGAGCGTAGCAAGCTGGAGCGCCACACTGTTCCCTCTGCCACCCGCCACCTGCTCTTTCTCCTGGCCGAAGGTTTGCACCTGTACCCAGAGGAACTCAACACACTGACAGAGTATCTTCAAAACCGCCAAGACCATCTGCAAGTAACTTCTGTAGAGGTGGGCACTGATGTTGCTCCTGTGATAAACAGCCTCCCTCCAGGGTTAGGAAAACCCCCACCACTTCTGCCTGCTGGTTCTGGACCACCACCAAGAGAGCAGACAAACCCACCCTCAGGGTCTGGAGATGCACCCCCAGGACATCACAGGGGATTGcaagGTTCATATCCCAAGACGAAACCACCTCCTTTGCTTTCGATGCAAAATCTAAAGCCACCTTCCCACAGATCAACTGCCCCCCATAGTCTTCTACCCTCTCGGGCCTCTACGGTGTCACATGGTTCTTCATTTAGTCCCCCATCCAGAGGGCCAGCAACCCCTCATagtgttgacaagccacaaccTCTGCTAGGCTCAGCACCTACACATGGGCCATCCTCCACCCGTACCCCTCTGCTCGATCGTGGCCCTCTTCTTGACCGTGCCCCTCTGCTTGAAACGCCTCTTGGTTTCCCGTCCCCTAGAGGACTGTTGCAGCATCCGGGGTCTCATTCGTTACGAGGGCCACCGTTGATATGTGGACCACCTCCGCAGAATGGACCCCGGGGTCCTAGAGCACCACCACCTTCACTCAGGAGCCTTCATATGGGAGCCCCAACAGGTCCTCGCCCCCCACCACGACGCCTGCTCCCTTGATTCTCTCGGGACACCTGATTAAATCATAAGCCAGAATTGCCATGTGGGACACTTGTTAACATTTTGgactgttttatgtttttatatttgatataaatttgacttctgtgttttctttcagGATCCTGAGATGTTTAAAGATGTACTGGTGTGGAAAAAGCCTCAGTTGTGTTCTCTTTATTTCCACAGGTGTAAGCtaattttaagaataaatatGGACATTGTCAGTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190852 lncRNA upstream 15557 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 108960 25348756 ~ 25349038 (+) True G129262
TU190829 lncRNA upstream 110718 25346405 ~ 25347280 (+) False mt2
TU190813 lncRNA upstream 169461 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 316139 25063454 ~ 25141859 (+) True G129135
TU191004 lncRNA downstream 198394 25662497 ~ 25663585 (+) True G129360
TU191012 lncRNA downstream 210968 25675071 ~ 25675310 (+) True G129368
TU191014 lncRNA downstream 212454 25676557 ~ 25676861 (+) True G129370
TU191118 lncRNA downstream 502913 25967016 ~ 26221023 (+) True G129435
TU191132 lncRNA downstream 692804 26156907 ~ 26158502 (+) True G129438
XM_043264489.1 mRNA upstream 711 25445589 ~ 25457287 (+) True rspry1
XM_043264490.1 mRNA upstream 711 25446379 ~ 25457287 (+) False rspry1
XM_043264351.1 mRNA upstream 21225 25417863 ~ 25436773 (+) True cpne2
XM_043264787.1 mRNA upstream 44741 25398117 ~ 25413257 (+) False nlrc5
XM_043264895.1 mRNA downstream 6971 25471074 ~ 25612128 (+) True znf423
XM_043264896.1 mRNA downstream 6971 25471074 ~ 25612128 (+) False znf423
XM_043264897.1 mRNA downstream 6971 25471074 ~ 25612128 (+) False znf423
XM_043216491.1 mRNA downstream 150110 25614213 ~ 25639371 (+) True si:ch211-212o1.2
XM_043216492.1 mRNA downstream 150340 25614443 ~ 25639371 (+) False si:ch211-212o1.2
TU190830 other upstream 109404 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 149933 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 149933 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 462048 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 869953 24583845 ~ 24588045 (+) False LOC122323037
unassigned_transcript_2193 other downstream 433320 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 457164 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 488295 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 764991 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 839784 26303887 ~ 26306806 (+) True G129468

Expression Profile