RNA id: XM_043264571.1


Basic Information

Item Value
RNA id XM_043264571.1
length 4354
RNA type mRNA
GC content 0.48
exon number 28
gene id c2cd5
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20286465 ~ 20311133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCCCACCTGCGCGAGCGATGCGATGCGCCTGATCCTGCGCGAGCCGTTTCATCTGACAGAcgaatttgtttttgaaattagCCGCATAAACGTCAAAATTTTGATGTGATTGCGGCCAAGATGGCTCACAGAATCGACGATGCGCCTTCCTGAGATCTAATTATGACTGAAGACGAGTTTTAATCGGCTCGAGGATCGATGGAGAGACTTTAACGTCAGATTGAACCGCTAAGGTGAAACTCTGATGAATAATGCCTGGGAAGTTAAAGGCGAAGATTGTTGCCGGGCGGCACTTGCCCGTCATGGATCGTGCCAGCGATCTCACAGACGCCTTTGTGGAGGTCAAGTTTGGAAACACAACGTTTAAAACGGACGTGTACCCCAAATCCCTGAATCCTCAGTGGAATTCGGAGTGGTTCAAATTTGAGGTGGATGATGAGGATTTGCAAGATGAGCCGTTGCAGATAACCGTTCTTGACCACGACACATACAGTGCTAATGATGCCATAGGAAAGGTGTACATCGACATTGATCCACTGCTCTGCAGTGAAGCTGCTACCGTCATCTCTGGCTGGCTCCCTATCTACGACACCATTCACGGTATACGAGGGGAAATcaatgtgctggtgaaagtggATCTCTTCAATGACCTGAACCGCTTTAGACAGTCTTCATGTGGGGTTAAATTCTTCTGTAcaacCTCCATTCCCAGATGTTACCGGGCCGTTATGGTACATGGCTTTGTGGAAGAGCTTGTGGTAAACGAGGATCCAGAATACCAGTGGATCGACCGTATCAGAACCCCTCGAGCTTCAAATGAGGCCAGACAGAGACTCATCTTTCTCATGTCAGGTGAATTGCAGAGGAAGATAGGTCTGAAGGTGCTGGAGATGGGAGGGAATGCAGTAGTGGGGTACCTACAGTGTTTTGACCTAGAAGGAGAATCAGGCCTTGTGGTTCGTGCCATCGGGACAGGCTGCACACTTGAGAAAATCAGCACACTCCCTGCCACAGCCACACACCCCAGCAACTCCTCTCCTTCAAAAGACATGAAAGACTCTCCGCAGGCTGCTCCGTCCACTCTCGGATGTCGTTCCACACACAGCAGTCCAGTTCACAGTGCGAGCAGTCGTCTTTCTCAGGGCTTCTCCGTTTCCGTGCCAACACTGCTGTTCGCCGGAATGGGAAGTGGTGGCAGTGCAGGGAAGGAGGCGGGCCCTCTTAAAGCTCTTCTGAGGCAGCAGACCCAATCAGCACTGGAGCAGAGAgaatACCCTTTCTTCACGTTGACCGCCTTCCCTCCCGGATTTCTCCTTCATGTGGGAGGCGTGGTCAGTGCGCGCTCAGTAAAGCTTCTGGATCGAATACACAACCCAGCCTTGGGTAACACCAGATCATACAAACTGCTAGACTGGAATAGTTTCACTGCAGaTGAGCCGGAGACACGCGATGCATGGTGGGAGGAGATTCGTCAGGAAATAAAGTCTCATGCCAAAGCTCTCGGCTGCCACGCTGTGGTGGGGTACAGCGAGTCCACCAGCATCTGTGAGGAGGTGTGTATTCTGTCAGCTTCAGGCACCGCGGCAATCCTTAGCTCCCGGTTCATGCAGGACGGCCCGCTGGACACCGAACACAGGTTGTCACGGCAACCGCTTTGTGTCTTTTCTACAGGGTCAGAGAGGGTCGAGGGGGATATGGGTAGTTCAGCCTCGCTAGGATTTGAGGAGGTCGTGTCCCCTGGCTGCGGGTTTTGTCACATACCATACGATGAGTTGAATATACCATTTCCTGCTCAACTCACCTATTGCTACTGTTGTCGCCGCTACAAAGTGCCCGATGTCCTCTTCACCACGATTGACTTGCCTAATGAAGCCAACGTCACCGGGAAGGGCTGCCTGATTCAGGCCAGGCTGTGCCGGACTAAAAAGAAGGCGCAAGGAGAAGGGAACGCCACATCGATTAGCAATCTTCTGCCATTTTTAGAGTACGAACTCCACACGCAGCTGATGAACAAACTGAAGCTACGAGGCATGAATGCTTTGTTTGGTCTGCGTATCCAAATAAGTGTTGGAGAGACCATGCTGCTAGGATTAGCGTCTGCAACAGGAGTTTATCTGACAGCTTTGCCCAGTCCTGGAGGAATCCAGATTGCAGGAAAAACTCCCAGTGACATCACATACGAGCAGCATATCTCTAATATGCAGAAGAAAATCAATGACACCATCACTAAAAACAAAGAACTGTACGAAATCAACCCTCCTGAGGTTGTCGAAGAGATCATTGGTTCGCCGATCCCTGAGCCCCGTCAGAGGTCTCGCCTCTTTCGTTCTCATTCAGAGAGTTCAGATGAGGTTTCAGAACTAGACCTATCCCATGGGAAAAAGGATGCCTTTGTATTGGAGattgATGACACTGATGCTGTGGAAGATATACATGCCCTTCTGACGGATTCCCCCACCCCAGCAGGATTCTACAGCTGCAACACTGAAATAATGCCTGGGATTCAGAACTGGACTTCAGCTATACAGATGTTTACCTCTGTGAGGGTCTTCCGCCTTAACAACGCCAACTTAACCAATCAGGGACTGAATAAAATTTTCAGTGACCTCTGTGAGAATCTGCTGAAGAGTTTGTACTTCAAACTACGGTCAATGGTCCCCTGTTGTCTTTGTCACTTGAACTTCACCGTAGCCATACCTGAAGATGAGCTCATTCAGGTGGCGGTGACAGCTGTGGCAATGAGCTTTGACAAAGAGCAACCTTTGGAGAATGGCAGACAAAGTGGGGAAAAGACACTGATAAAGGCCATAACAGAAAATGATGAGCAGCTTCAGTTCAATCTGGAGCTCAATGCTGAAACTACTTCTCCCAATCCTCTCAGTTCCCCCAAAGgtCTATCAGAGGTTGGCAGCCATCCGTCAGCCAGAGcccCCTCAGTTGATTACAGTTCCTTTGCAGACAGATGCAGCTCCTGGATAGAGCAGCTTAAACTGAAAGCTCACACCATAAGACGCGGATCGGTTAAAACAACATCATCTCTGGAGAAGGCCAGCCCGTTGCCTGAAGGTCGCTCTCGTTCTCTTCGTTCAAATCGTTCCTACTCAGGCAGTTCTGTCGCAGTCGTCAAAATGACCCCACTCTCTTTCATTCCTGGAGCAAAGATCATCAAATACCTAGGCATCATCAACATGTTCTTCATTAGAGAGACCACCTCACTCAGAGAGGAGGGAGGTGTGAGTGGGTTTCTGCATACGTTTATTGCTGAAGTGTTTGCGATGGTTCGTGCCCACGTCGCTGCTCTTGGAGGAAATGCTGTCGTCTCCTACAGCATGAAggagtgtgtgttcatggaGAACCCCAACAAGaaccaggcgCAGTGCCTAATCAATGTCAGTGGGGatgctgttatttttgtcaGAGAATCTGAACTCGAGTCGACTTCAGTACAGCCACAGTCAGCCACCACAAACACCTCCAACGGCGGGGAAGGAACGTGAactcgcatacacacacacacactgacaaacTCTCAAGTAAACGAGTCTTAACATGAACCATGCCATCTAACGCAGTGTCAGGCTTAATCTACCAACCAAATCtccaaaaacaagcaaaaatctAAGTTGGTTAGTTCTCCAAAGTGTCATATTCTAGACTggccaatattttatttcaggataATGTGTTAAAATCCCCTCCGTCAGACGCCTTTCAGAAAGGTCATCTGccatgtttttatatgttggCCGTTGTTGTTCACATTCCATTTTGTCCAAGTGTGGCGGAGGCAGCTACCAAATTCAAAAGGTCTATaaaatttgtctttgtgttcGCAAAGAGTGTGTAAATGTGTCAACAGCTCTTTAAATGGccatgttttgtatttaaataaaggaataaacTACTGATGCACTCTCATGGACATCCAGTTCAGGATTTTAAATACTGGTTTTAAATAAGACACTTCCTGTCACGTCCTACTGATCTCTTTAAAATCATGTCAAATGCTGGAAACGTTTGTTTGCTTTCATGTGCCAcaatgtatgcttttttttttcttttcttttttttaaatcatgtttggGTCGGACTTCTGCAAGGCCGATCCGGTTCTCTTGCATGTGCAATGCCAGTTAATCATTTCGAGAAAGAGAGGTTATTTTAGGGCAGAGTTGTGTTCACCGTGGACTGACACTTGAATGTACATATGACGGGTCTGGATATGAGGTTGGCGGCTCTGTTCATGTGTTGACTGACTTTTAAtgctattattttgtatatgtgtttgCCTGAAGACAAATCAAAATTGCAcattaatatgatataattgaataaaactattattgcTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188698 lncRNA upstream 5170 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 61881 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 71234 20202748 ~ 20215231 (+) False G127766
TU188679 lncRNA upstream 75048 20202748 ~ 20211417 (+) True G127766
TU188509 lncRNA upstream 294829 19985741 ~ 19991636 (+) True G127663
TU188708 lncRNA downstream 14197 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA downstream 62721 20373854 ~ 20375835 (+) True G127800
TU188810 lncRNA downstream 250950 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 274918 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 286074 20597207 ~ 20600519 (+) False terb1
XM_043216543.1 mRNA upstream 7969 20259769 ~ 20278496 (+) True b4galnt3b
XM_043264422.1 mRNA upstream 30018 20250402 ~ 20256447 (+) False fkbp4
XM_043264421.1 mRNA upstream 30018 20250403 ~ 20256447 (+) True fkbp4
XM_043264419.1 mRNA upstream 47664 20230154 ~ 20238801 (+) True wash1
XM_043263955.1 mRNA upstream 88650 20160121 ~ 20197815 (+) True ptprq
XM_043265078.1 mRNA downstream 646 20311779 ~ 20321200 (+) True lmf2a
XM_043264956.1 mRNA downstream 53598 20364731 ~ 20371597 (+) True dnaja2b
XM_043264958.1 mRNA downstream 102883 20414016 ~ 20422329 (+) True LOC122363067
XM_043264111.1 mRNA downstream 129011 20440144 ~ 20445367 (+) True si:dkey-88e18.2
XM_043264827.1 mRNA downstream 159968 20471101 ~ 20504374 (+) False vwf
TU188630 other upstream 198884 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 272679 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1444930 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1504306 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1724855 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 236694 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 240015 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2089841 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2123673 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 3145967 23457100 ~ 23579802 (+) False cdh13

Expression Profile