RNA id: XM_043264600.1


Basic Information

Item Value
RNA id XM_043264600.1
length 3644
RNA type mRNA
GC content 0.43
exon number 4
gene id trhr2
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25176932 ~ 25187744 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAAGAGTGCAGTTACTAGCGCTTCTGTACAAGATCACATTTTTTGCTCGTCATGTCAAATACTTCATATcagtgcattttgtttttcatctggGGTTTACAGCCGACACCGCACGAGAGCTGTTTCGGTTCCAAACTACAAGAATGATGTCTGAGTGATCAATTGGACGGACGCTTGCATTAacgtgggaaaaaaaattagcCTCTGGATTTGAATGCGATGCTTTTAATGGAAGGATACTGTTACAGAAGAAATAATGGGCTACGGTCAGCAGATGAACATCATTATGCTGTTGAAGCCAAGAAAATTAAACAACATACTTAATAAGAGAAAAGCACATCAATAAAAGCTGGAACTGAACGGgcagattttgttttcatattaaatCTTTTGAATATCAAACAGACTACGTTCAGCTTTTTTTCTTCGCCACCAATTTTGTTTCTGCCTGTTGCTTCACATCTTATATGTAAATACTCACATCGAGAGGATTAATCATGCAGGAAAATGTGAGTTCCAGAATGGACACCCCCACCAATATCTCCCTGGTGGGTTCTGGGGACGCTGTGTCCGAGTCCCTGGAGTATAAGACCGTATCTGTGTTCCTGGTGCTGCTGGTGTGTGGCGTGGGCATAGTGGGAAACATCATGGTCGTGCTGGTGGTTCTTACCACACGCCACATGCGTACACCCACTAACTGCTATCTGGTGAGCTTGGCCGTGGCGGACCTGATGGTTCTGGTGGCTGCGGGTTTGCCGAATATCTCAGAGAGCTTGATGGCCACCTGGGTGTATGGGCATGCTGGGTGCCTAGGCATCACCTACTTCCAGTACCTTGGTATTAATGCGTCTTCCTGTTCGATAACAGCCTTCACTGTTGAGAGATACATCGCTATATGTCACCCAATGAGGGCTCAAACGGTCTGTACGGTATCCCGAGCCAAGCGCATTATTGCTGGGGTGTGGGCTTTCACCTGTGTTTACTGCATGCTCTGGCTGTTCCTGGTGGATATCCAGGTGAACCCTGACGGCCGCGTTCAGTGCGGCTACCGTGTGTCTCGAGACCTCTACCTGCCCATCTACCTGATTGACTTCACCATCTTCTACGTGATCCCTCTGCTCCTGGCCATTGCTCTTTATGGTCTCATCGCCCGAATCCTTTACCTGAATCCTCTGCCCCACCCACCAGACTCAGGTACCATTACCGCCCCCACTCTCAGGAGGAGCTGCAAAGAACCAGCGGATGGCGGAAAAGCAGGTCGTCAAGGACGTCCAAAGAGTGCGCTTTCTTCACGGAAACAGGTCACTAAGATGCTCGCAGTGGTGGTTGTGCTCTTCGCCCTGTTGTGGATGCCGTACAGGACCCTGGTTCTCATTAACTCCTTCGTGAGCACGCCGTACCTGGATGCCTGGTTCCTGCTCTTCTGCAGAACCTGCATTTACGCAAACAGCGCAATCAACCCTGTCGTTTACAACCTGATGTCCCAGAAGTTTCGCTCGGCCTTCCGTGGGCTGTATCGCTGCCATAGAGAAGACATACACCAGCGGACGCTCTCTATGTTTCAGAGCGGATACAGCCTTGGAAGGGAACCCCGGCTTTGCAGCAACACCAACGGCACACCTAAGAAAATCGGTTCAGTCACTCCCGAGCAGAAACCAAACAAAGGCATGGAGCACAGCAAGGAAAATATAAACAAGCTAATTAGCGATGGCGTAAAAAATGAGATTGAGAAAAGCATCAAGAAAAACGTAGATGAATTGAAAAGCTCAGTTGACAAGGAGATGCCTACAGTGGAGAACGTGGACATGAGCAAGATTAATGATAATGGGAAAATAATGGAGGAAAGCGATAATACCACTCAGGATATTATCGCTGACACGAGCAACACAGAGCAGACACAGCTAGCCGCCGATGAACCCAAATCTACAGTGGGGGGAGACAAACAGTTAAATCACAGCATTGTATAGATTGCTCCactgcatactgtatatatttcattgAAGTGGCAGGGTTGATCGCTAGAGCTAGTTGTTCATTTTGAAGCCAGGTCTTGGAATTCAAAATTTGTATTTACAGGTGTCATCGTCACTCTTTAGTGGAGGTGGCAAGACTGGAGCCACTTTCTCCTCATAATTTACAAGTGGAACCATTTGGCTGTCAGCACCAGCATCACATGCCTCATAGAGCTAGAGCTTCAGCTAGGGCTGACTAATttgttacaaaacattattttgaagaaacatTTAACATCTCTTATTGTTGCTGCTTAAAATATAGACACTGAAACATCACctacacaattttaaaatccaaactcatttaaaaacaggCATCAAACACTTGCTGACTTTGTAAAGGGTTACTGAGGGAAAAACCTGGACAACATGAACTGAACAACTGAGGATCACACACCACCAGACtttcaagacattttgaagaaaacatttagaaacataTTTCTCATTGCTAGGAGATCAGCGAAATGAAAGCAATGCATGCTCTAAAATCAactcaaaatatcaaacatgatATGTTTGACATCCCTCGACAGAACTATTGATAATTCTCCAGACAGCAAAATCtgggaaattttttttgtgtattctaGCAAGttgtacaaattagccacccTGTAATATATGTATGATGTCTTATTCCAATGAAAAGCcttacaatgaaagtcaataggATCCAAAACAAAATTAGACCCAGCAGAATTTCATTTCAATATACAAGggagaaaaaaatctgcttccatataaataattacagatacaatgtaaattaattaattatttttaattgtatttattttacctcATATTTTTTCACCAAAATGTGAAACTCGATCTTCCAGTGACAAGACAAGCTTCTACAATCATTTAGTCCGCTTAAGCTCCGgttatttgttctgttttcatCCAATCAACAACTGATGGGTTTTCTGTTTTTCGATAAGCTGTTTCATTTAGATATACATCAAAATATGGATGAAAATATCTGTTATTACTTCCGTAACATTCCATATAGTCATACTTGAGCCTTCTCTAAAAGAAGCAAATTCTTtcagttgacccaaaaatgaactcCAGTCAAGTCAAAAAAGACATACACAAAACCGCAGGACTCCTTCACTGTCAAACCgctaactaaatatttaattaaaatctcaGCCTTTTAATAACCACGCAAGGCTATATCAGAATTTCGACTTGGATTTAATTAATTGTGCAGACTTAGCTCCAGGATGTGTCTTCTCTCAACACAAAACTTTTTTACCCACTTTGTGTCTTCAAACTCAGCGGAATGAGAAACAAACAAGCCTCATCCTGCTTTTAAAGCACAGACAAAGTTATCCcttaaaaacattcagaacacTACGGGGCATAAGatccatttaaaatgcttttgtcCGACAATAAGGCCCGCAGAATCATGACACACTTGTGTTTTTCCACAGCCAACATTTGCCATCACTGGATGAATTCCATAGTACGTGGAGATCTAATGCCTCACCATTTGTTCCAGCACAAATAAACAGAACCCGTTCTGTGTGCCCAGAGGTATGTCTGAGCTTTTTAGACCCCATTTACAATCAGTGGAAGATGAGCGAAGCCAGGCATCCATTTGTCAGGTGtagtt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190642 lncRNA upstream 35073 25063454 ~ 25141859 (+) True G129135
XR_006253142.1 lncRNA upstream 127327 25034118 ~ 25049605 (+) False LOC122362644
TU190635 lncRNA upstream 133112 25043088 ~ 25043820 (+) True G129134
XR_006253141.1 lncRNA upstream 134748 25034118 ~ 25042184 (+) True LOC122362644
TU190626 lncRNA upstream 159948 25013750 ~ 25016984 (+) True G129125
TU190813 lncRNA downstream 100399 25288143 ~ 25288537 (+) True G129246
TU190829 lncRNA downstream 158661 25346405 ~ 25347280 (+) False mt2
TU190833 lncRNA downstream 161012 25348756 ~ 25349038 (+) True G129262
TU190852 lncRNA downstream 252304 25440048 ~ 25442441 (+) True G129270
TU191004 lncRNA downstream 474753 25662497 ~ 25663585 (+) True G129360
XM_043264006.1 mRNA upstream 52143 25123321 ~ 25124789 (+) False chtf8
XM_043264005.1 mRNA upstream 52143 25123327 ~ 25124789 (+) True chtf8
XM_043264158.1 mRNA upstream 67997 25107115 ~ 25108935 (+) True si:ch211-218c6.8
XM_043264159.1 mRNA upstream 67997 25107115 ~ 25108935 (+) False si:ch211-218c6.8
XM_043264256.1 mRNA upstream 73181 25099382 ~ 25103751 (+) True si:ch211-242e8.1
XM_043264614.1 mRNA downstream 102258 25290002 ~ 25294615 (+) True LOC122362888
XM_043264615.1 mRNA downstream 106999 25294743 ~ 25309740 (+) True kiaa0513
XM_043264601.1 mRNA downstream 134912 25322656 ~ 25334005 (+) True phaf1
XM_043264604.1 mRNA downstream 134912 25322656 ~ 25334005 (+) False phaf1
XM_043264603.1 mRNA downstream 134912 25322656 ~ 25334005 (+) False phaf1
XR_006246977.1 other upstream 180982 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 588887 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 719372 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1440086 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1597130 23457100 ~ 23579802 (+) False cdh13
XR_006253170.1 other downstream 106999 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 106999 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 158661 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 709679 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 733523 25921267 ~ 26174156 (+) True G129424

Expression Profile