RNA id: XM_043264601.1


Basic Information

Item Value
RNA id XM_043264601.1
length 5147
RNA type mRNA
GC content 0.42
exon number 16
gene id phaf1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25322656 ~ 25334005 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATCAGCTGATCATGGTGTTTTGGATGGAAGTTGCTTTTGGCACGGAGGGGCTCTTTCTTTATCATCTTAAGCAAATCTTAAACGCCAGAGACGCCGGAAAATAAAGCTGCATGTAACAGCGCGCTGTCTCCAACAACGGAAACGGGGGCACCCGGAGAAATCCGCGTTATTATGAACAGATGATGGTCATAAGTGGTGATCTGTTTGCTTGCTGTTGAATCAtcggaaagaaagaaaacaacgtCAGGCGAGGCTCGTGCGAGTCACTGATAGTCTGATGTGTGTATCTTGACTTATCTCGGCCTGTGATCGCTGCCATAAATAGCATAAATGCATGTCATTTAACTGGCTGGACACGACATTTCCTTTGTTCGATGTAATAATTAGTAGATTGTGCTTTGTGTGATTCAAGAGTAAGTCAAAGGTCAGATcaaagtgttgttgttgttgttttttttacgaCAGCAGTTATATGATCGCTTTGTTCGCCTGCATATTGGTTAGAAGATAAAATACGTCTCGAATTAATTCATGCTTATAGAAGTTGACAAAAGAGCAGCAACCTGTAAGCAGTTATTCATTCTCGCTGTGACCGACGTACAGTTTACccgtttaatttatttaagctTTGTCACTGGCCTTTTTATAAGTGTGCTTGTAAGTGTGTGTCTGTTATTCGTTGAATGGTGTTATTTATAAGCATGGTGACGGTGGAATGCGTCGATAGCTGGATTGCATCACTTGTGTTTTGACATATCTGACGTCAGGGCTGTCGCGTGTCACTCAAACTGTATTTAAAGTGTGcgggagcttttttttttaaacatactacTTTGTCATATTTTGGACCGATTTGGCGATTTAACGGTGGATTATTCAAGATATTTCGAGAGGAAAGACTCAGATCTGGCACAGTCAGAGATCCTCGTTGATATTCCCAATTTCTCCCCGCCAATGCTGGATCTGGAGGTCGTTCCTGAGCGATCTTTGGGAAATGAACAATGGGAATTCGCATTAGGGATGCCATTGGCCCAGGCCATTTCAATATTGCAGAAACACTGCCGAATCATCAAAAATGTCCAGGTGCTCTACAGCGAACAAATGCCACTCAGCCACGACCTCATTCTCAACTTGACTCAGGATGGAATTAAACTGCTGTTTGACGCCTGCAACCAGAGACTGaagGTGATTGAAGTGTACGATTTGAGCAAAGTGAAACTGAAATACTGTGGAGTACATTTTAACTCTCAGGCAATAGCACCTACTATTGAGCAGATTGATCAGTCTTTTGGTGCTACTCATCCAGGAGTCTACAATGCTGCCGAGCAGCTCTTCCACCTGAACTTCCGAGGGCTTTCCTTCTCTTTCCAGCTAGACTCGTGGAGTGAAGCTCCTAAATATGAGCCTAACTTTGCCCATGGCTTGGCCTCCCTGCAGATTCCCCATGGGGCCACTGTCAAACGGATGTACATTTACTCTGGAAACAACCTTCAAGAAACCAAGGCTCCGGTGATGCCTCTGGCCTGTTACCTTGGTAATGTGTATGCAGAAAGTGTGGAGGTGTTGAGAGATGGGGCGGGGCCACTGGGTCTCAAACTACGCCTGCTCACTGCAGGATGTGGCCCAGGAGTGTTGGCTGATACGAAAGTGCGAGCCGTTGAGAGAAACATCTACTTTGGAGATTCCTGTCAGGATGTTTTGAGTGCTCTTGGCTCTCCACATAAGGTCTTCTACAAGTCGGAGGATAAGATGAAGATCCATTCACCCTCCCCTCACAAGCAAGTCCCGTCCAAGTGTAATGACTACTTCTTTAACTATTATATTCTGGGAGTGGATATACTGTTTGATTCTACAACCCACCTGGTCAAAAAATTTGTCCTTCACACCAACTATCCCGGCCATTACAATTTCAACATATATCATCGGTGTGATTTCAAGATTCCTCTCATCATTAAAAAAGATGGGGCAGATGCACAGAGTGAGGACTGCATTCTGACCACCTACAGCAAATGGGATCAGATTCAGGAGCTGCTAGGACACCCCATGGAAAAACCAGTTGTGCTACACAGGTCTTCTTCTGCAAACAACACCAACCCTTTTGGTTCCACATTTTGCTTTGGACTACAGCGGATGATATTTGAGgtcatgcagaataaccACATagcttctgtgactctttatggAGCGCCTCGTCCAAGTAGCCTGGCCCGGGCCGAGCCGAGCGCCCACTGAGGAAGCCCCCATACCCATGGTGCCCGTCCAGCCCTGCAGAGCCTCTGAACTGACCAGCAGAGTGTGCCTTCACTCACTGCTGCCATCACACAAGCTAAAGCGAGACATGCTGGGAGTTACTCTGGAGTCAAACTCGCCCCGCCCCCAACCCTTCACATTTTAATAGAGGCCCCGATTCGGTCTCCTCCTCCAGTAATAGCATGGAGGCTGCCTTCAGCCTGCTAATGATCCCAGATAACCGTGCAAACCTGGCTTCGCCCCCAAAGCTTTAACCCAGACATGCATCAACGTTAGCATCGGTATAATACTTGTGGATGCACAGTGATCCATTTACACACAAgcatattgtgttttgttttttgcctaACCTAAAAATTTCCATACCAGATGCACCAAGGGCAAACAGCGAATCGATTTCTCCTCTGCACGCTAAACACTTTAACAAAAACGCACATGAATTCAACTTCATTTGCTTTCCGACGAGCAGAGGATGAGAGCAAAGTCAAATGAGGACAAACTTTTTCGCAAGCAAAAGTCAATGACGAGTGTGTTTTGTATGCATTTACGCGAGGTTCCAAGCACAAACTAGCACAGTATGGATCCAgtgctgtgaaaatgtttttgtggcACATGAGCAGGCTCCCATACACACGTAACGATTCATAAACTCATTAACTCATACCAAGTCAGCGGCACAGAATACCTCCCATTTTAATAGCGTACATCCGCTTGGTTGattctgttattgttttgttgttcgtGAGCGCATTCGTTTTGAACATTTGCACTAAGATACACCTAATTTACTTGATAATTGTCTCCTGTCCACTGAGGAACGCTTTAATTGCCGAGTCTCGGAGAGAAAGGACGGCGGGGGAGGGAACGACGACGTGCAATCTGGATTTCAAAGCTAGTTGCGACCCTGACTGGCGAGAAAAGCCATCCACCCATCGCTGTTTCTCTTTACCGCTTAAAGCCGTCAATTCTGTTgccgtctttctttctttttttttgtccacagTACAAAGATGTGAAGTTCTTTTACCTTATTCAGTATCTTAAAGTCTTAACTGCAGAATTGTCTTCTGTCGCCTGATTGCCAAAACGTTAGCCAAAGAAGAAACAACAGTTAGCtctctgtcattttaaatttacatcGTAAGAACATTCCCGTTTGATTTAATCCATCCAGTCCCTgaatagtttttaatgttttaaagctttttgaTCTCCGGATTTGTTGCCGTTGTTTGCGTAGTAAGTAGACGTGATGTTTTCTGTAGCCATGTCCATGTCTGTACAGATCTGTAAATAACGTACACTGTTCTCATGATTTCATTGGCCTAATGGTACCCTTTTTAGATCAGCTGACATCTGGAACTTCCCTACACTGCTAACATATCGAgagtttttggttttctttgacAGCCCTTGAGGGAGACAGCATCCATTGTTGTCCTGCTGGCCTACATTTGATCACTTCAAGGTGGATTTAACAGTGATGACTAGAACGTTTTAACTGTAGTAAATGGTTTGTTCACCTCAAACCGTTCGTTGGAGTGCTGCCTGACAGCTTAGCCACCCAAAGCCGTCAAGTTCCAGTTCTCTGATGTCGTTTCCACCTCCCTCCAGGCTCCTGCAGTGTGTGGTTCAGGCTAATTCGGGCATTTTTAGCTTTCTGTTACATTAACTGTGCTGGAAGGCCATCAGtggtgtttttaatatattttacccTTAGCTTTTGGTCATTTAAAAGGAAGATGCTATTAACATTGTGCCTCATCTCCCACCGAGCCTGTCTTGACTTTTTTCCTCTGTAAATGAAATTGTTTGAAAAAACGCTTTGTCTATGTCTGAGCATGTAAAGCTAAATTGATAGTtttagtctttttgtttttttaaaatcgtACCTGAATAttaaaggaaaaggaaaaacgGACTCGTTGAGTATTGAAGTCTTGTCAAGAAAGACTAGTACTATGCAAGCCTATTTCCGCCAtggaaacacaacaaaaaatgtgaaaaggtCAATTGAGAAATGtaaactcagaattgtgagGAAAAAGTCAATTGTTAGATtacaattgttaaaaatttACAATTGTGGGAGATAAACAATtactttttgatttgatttttaattcatGGTGGAAATAAGCTTCCAGTTTACTCTGTTCAAAATGCagcatatgaaaaaaatgatgttatgggtcaaaaaaatatataaaaacatgtagaTGGCCCTTCATGAGTTGGGGTTCACTAAGTGGTTGTGGTGtttctattaaaatacaacCAGTACTTTTTGAAAACAGCGTGAAGTTCCACTTTAAtaagtttaaagtaaaatatgtttaGATTAAAACATGTTTAGGGCTAAGGAtcagatttaaaatgcacaattgGAACCTCTGTTATCAATAAGGAATAACACAACTGCTGTTTTAGTGTCATTTAGAGTGTTTTACTACAGGAGAAATATGGTCTGATGGCCTGATTGCCTGCACAATCTcaggtggatttttttttttttaatgccaggAGCAAGCGAATGCTTAGTTTTCATCAAATGGGTTTTGGCCGTATTGTTTTCTCTTCAGACTTTATCCTATTTTTGCAtcggaatgaatgaatgaatgatcgTCCTGAGGATTGTAATTAGAAATGGACAACCTCCATACAGTGTAATGCGCATATTAATGCTATGTATTGTATCCCTCTATATTGTATGTTCTTCCCCATCCTCCAAAGTGATTATTTTTTGTGGATTCAGTACATTTAACCCATTTCTGGAAATGGGATTTAtcctcaattaaaaaaaaaaaagtgtgtatctAAATTGATTGCAATGTGGTGTTTTGTATCTCAGATATTTTTACTTCTGTAGATTTAAGAAACATGTACGCGGAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190813 lncRNA upstream 34119 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 180797 25063454 ~ 25141859 (+) True G129135
XR_006253142.1 lncRNA upstream 273051 25034118 ~ 25049605 (+) False LOC122362644
TU190829 lncRNA downstream 12400 25346405 ~ 25347280 (+) False mt2
TU190833 lncRNA downstream 14751 25348756 ~ 25349038 (+) True G129262
TU190852 lncRNA downstream 106043 25440048 ~ 25442441 (+) True G129270
TU191004 lncRNA downstream 328492 25662497 ~ 25663585 (+) True G129360
TU191012 lncRNA downstream 341066 25675071 ~ 25675310 (+) True G129368
XM_043264615.1 mRNA upstream 12916 25294743 ~ 25309740 (+) True kiaa0513
XM_043264614.1 mRNA upstream 28041 25290002 ~ 25294615 (+) True LOC122362888
XM_043264600.1 mRNA upstream 134912 25176932 ~ 25187744 (+) True trhr2
XM_043264006.1 mRNA upstream 197867 25123321 ~ 25124789 (+) False chtf8
XM_043264005.1 mRNA upstream 197867 25123327 ~ 25124789 (+) True chtf8
XM_043265145.1 mRNA downstream 12387 25346392 ~ 25347187 (+) False mt2
XM_043216548.1 mRNA downstream 15476 25349481 ~ 25371467 (+) True nup93
XM_043216549.1 mRNA downstream 22116 25356121 ~ 25371467 (+) False nup93
XM_043216766.1 mRNA downstream 37700 25371705 ~ 25381143 (+) True slc12a3
XM_043216767.1 mRNA downstream 37700 25371705 ~ 25381143 (+) False slc12a3
XR_006253170.1 other upstream 14591 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 14591 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 326706 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 734611 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 865096 24449765 ~ 24457560 (+) True G128858
TU190830 other downstream 12400 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 563418 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 587262 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 618393 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 895089 26229094 ~ 26332010 (+) False G129454

Expression Profile