RNA id: XR_006253170.1


Basic Information

Item Value
RNA id XR_006253170.1
length 1635
RNA type transcript
GC content 0.50
exon number 12
gene id kiaa0513
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25294743 ~ 25309740 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgctaaGATATATTTACCTATATTAATGCTGATTTAATTACACATgcaatttatgttatttaaaattttgatgcaataatacaaagaaaaaagaatgcGAACGTGTTGGAAACTGACAGCATCAAACGTGAACAGTAAAAAATACGCAGTGTGCAGTCACGTGTCATTTGGGCTACGTCACTGGATTCCCCTGTCCGCTACTGATAACATTGCGCATGCGCACACTCAGACTAGTTCAGAGCAGCCCGTACATCTCTCACGCGCTGGGAAGACGGAGCTCCAGCTGGAACATCCAGGgtcCAGCTACTGTGACACAGTTGTGGAACTACAGACAGTGCTTCCCTCCCTGAGCATTTTTTAGCGGGCATCTTCACATCTCACCTAGGGACTGAATTACCCCCATAACAAAGTATGGAGGGGGCCGTGGTGAACAACCTCATAGACTTTGACTCGCCTCCAGAAGGGACAGCTCCCTCGGTTCTCGGACCTCCCAGTGGGGTGGGATTTTTCTCATCCGAGCCTCTCTTCCCTGAGTCTGCGAGCGAGGCCACGATGGAGCCCATTCTACCAGAGCCAATGGCCCCCACACACACTCCCCACAGAGAAGACGACAGTGATGCCACCGAATCTGCCGACAGCGACAACGAAGACACAGAGTCCCCGTCGCACCCATCGAGCACGCGGCGGTCCTCGTCCTGCTCCAGTCACAGCGCTGAGGACGCAGAGGAGACCGAGATAAGAGCGTTCATGAAAACCTACGTGGCAAAGCTCTTCCATGGAAGGGAGGACTTTGATCAGGAGGAGAAGGCTCGCTTTGGAGAGCTGTGCACTGGAGAGAACGGCAAAGGCAGGGAGTGGTTTTCCAAATATGTCAGTGCACAGCGCTGCCACTCCAAATGTGTGAGTGAACAGACGTTCTACAGGCTGGTGCAGTcctttgctgttgttttgtttgagtgTCACCAGGTGGATGATTATGGGCCAGCCAAACACCTCATGACCATGTGCTTCACATATTACTACATGGgtaAGTCCCAGCTGTCTCCCACAGAGCTGCTGGAGAGGCCCAGCGGGGGGATCGACTCGTACCTGCGCAGTGGAAAGGTCTGGCTCTCTGGAAAGAAAGATATCGCAGAGCGACTGCTCAAAAACACTTCCACTAAGACTGATGTCAAAGGATTCTTTGGCGGTCTGGAGAGCAAACTGAGAGGACCCTTGGGCCGAAAGAATGAAGACACGGACAAACCTGCTGAACAGAAAACTAAAACTCCAGtttctccccctctctcccCGGAtagaaaagaagaggagaaaatCTACCTGTACACACACCTAAAACAGCAGCCCATTTGGCACACTCTGAGGTTTTGGAACGCAGCATTTTTCGATGCCGTCCACTGTGAGAGAAATAAAAGATCCCCACCACAAGGCGGACGGCTGAGGAAGAGAAAGATGAAAGAGAGAAGTGGTGTCACATGACCCAGGAAGAGAAAGATGATAGCTCCAGATTTAATGAGAACATCACTTTCGGTCAGCTGGGAACATTCACCCATAACATGGTGGCTTTCGGATTGAGCAAGAAACTCTGCAATGACTTCCTGAAGAAACAGGCAGTCATCGGAAATCTTAATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190813 lncRNA upstream 6206 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 152884 25063454 ~ 25141859 (+) True G129135
XR_006253142.1 lncRNA upstream 245138 25034118 ~ 25049605 (+) False LOC122362644
TU190635 lncRNA upstream 250923 25043088 ~ 25043820 (+) True G129134
XR_006253141.1 lncRNA upstream 252559 25034118 ~ 25042184 (+) True LOC122362644
TU190829 lncRNA downstream 38340 25346405 ~ 25347280 (+) False mt2
TU190833 lncRNA downstream 40691 25348756 ~ 25349038 (+) True G129262
TU190852 lncRNA downstream 131983 25440048 ~ 25442441 (+) True G129270
TU191004 lncRNA downstream 354432 25662497 ~ 25663585 (+) True G129360
TU191012 lncRNA downstream 367006 25675071 ~ 25675310 (+) True G129368
XM_043264614.1 mRNA upstream 128 25290002 ~ 25294615 (+) True LOC122362888
XM_043264600.1 mRNA upstream 106999 25176932 ~ 25187744 (+) True trhr2
XM_043264006.1 mRNA upstream 169954 25123321 ~ 25124789 (+) False chtf8
XM_043264005.1 mRNA upstream 169954 25123327 ~ 25124789 (+) True chtf8
XM_043264158.1 mRNA upstream 185808 25107115 ~ 25108935 (+) True si:ch211-218c6.8
XM_043264601.1 mRNA downstream 14591 25322656 ~ 25334005 (+) True phaf1
XM_043264604.1 mRNA downstream 14591 25322656 ~ 25334005 (+) False phaf1
XM_043264603.1 mRNA downstream 14591 25322656 ~ 25334005 (+) False phaf1
XM_043265145.1 mRNA downstream 38327 25346392 ~ 25347187 (+) False mt2
XM_043216548.1 mRNA downstream 41416 25349481 ~ 25371467 (+) True nup93
XR_006246977.1 other upstream 298793 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 706698 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 837183 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1557897 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1714941 23457100 ~ 23579802 (+) False cdh13
TU190830 other downstream 38340 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 589358 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 613202 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 644333 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 921029 26229094 ~ 26332010 (+) False G129454

Expression Profile