RNA id: XM_043264711.1


Basic Information

Item Value
RNA id XM_043264711.1
length 6955
RNA type mRNA
GC content 0.46
exon number 30
gene id eea1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24550432 ~ 24570221 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGAAAAACGGGTGGGCTTGTACAGAAGCAGCAGTGTGAGTCTGCAGGtgtcaacaacaaaataataaaacacaccctCATTAGCACAAAACTTTTAAGATTTGATTTTTCATAGTTCTAACCAGAGAAAGGACCAGAATGTTAAGACGAATATTACAGATGACTCCTGGGAAAGGAGGCTCCCAGAGCTCAGAGTCTGAGCAGCCGTCTGCTGATATGAATAATGAGTCCTCAGAGGGCTTCATTTGTCCCCAGTGTATGAAGTCACATAACTCTGCTGAAGAGCTCTTCAAACATTATGAGGTGTTCCATGAGCCAGGAGACCAGCCGTCCCCCTTCACCCCTGGCAGGGAGGATCTAGCCCTTCTTCGACAGGAAGTCCAAGATTTACAGGCTTCACTGAAGgaggAACGCTGGTTTTCTGAAGAATTGAAAAAAGAATTAGACAAAGTACAAGGACAGATAACAACTAACAAAGGCCCACAGAGTGATGGTACTAGTGAAGAATCAGAGCTCGAGTTGAGGCTTAATGAATCTGAGACAGAGAAGTTCAACATCAAACAAATGAAAGACTTGTTTGAACAAAAAGCTGCTCAGCTCTTAACTGAGATAGTTGACATCAAATCTCGTTATGATGAGGAGAAAAGCATGAGAGAAGCACTGGAGCAAAGGCTGACCAAATTAAACCAAGATCTGCAGAAAGAGAAACAGGAGAAAGAGAAACTGGCGGCAGAACTGCTCCAGAGGCCCGGAGTGGAAGACGTGGAGGTGTTGAAGAAAGAGCTGGTGCAGGTGCAGACGCTCATGGACAACATGACCCGTGAGAGGGAGGAGGAGTCAGAGCGCCTCAAGAGCCAATACGAACAGCTGCAGGCCAACTTCACTACCTCAGAGATTCATAAACTGGAGAAAACGATTGCTCAGTTGAAGGCAGAACTGGAGAAGGGTCCTCAGGAGGCAGCGGTCTACACCCAACAAATCCACCAATTACAGAGCAGCCTCAACAACTACCAGCAGCAGACCCAGCTTTTGACAGATAAGTTATCTCGTAAGGAGAAGGAGAATCAGGAACTTGATGAGCGTCTGAGTCAGGAGCAGGCCTCTAAAAAGAGTCTTCAGGCTAGTCTGCACCAGAAAGACCTGGAGCTCCAGGAGAGCCAAGCCCGGGTGTCATCGGGAGAGTCAGCTCTTAGTCGGGTGCAGGCTGAATTGACCGAACGTGGGGAGGAGGCTACACGACTAAGACGGGAACTCGGTGAGCTGGAGAAGAACCACCAGGAGGTGAAGGCAGAGAGGAAGCAACTTCAACAGCAGAGAGAAGATAAAGAAACCCAGGGTCTGCAGCAGCAAAGTGAGATCAGCCAGCTGCATGCGAAGCTGCTGGAAACCGAGCGTCAGTTGGGGGAGCTGCAGGGACGACTGAAAGAGCAGAGACAGCTGTCAGGAGAGAAACTCAAAGATCGGGAACAGCAGGTGGCAGACCTGCAGCTTAAACTCTCCCGCTCGGACGAGCAGTTAAAGGAGAGCTCTACCAAGTCTACTGACCTGCAGCATCAGCTGGACAAATCCAAACAGCAGCACCAAGAACTGCAAACACTTCAACAGAGCACTAATGGGAAACTTAGGGAAGCACAGAATGACCTGGAGCAGGTGTTGCGTCAGATCGGGGACAAGGACCAGAAGATCCAGAACCTTGAAGCTCTGCTGCAGAAGAGCAAGGACAGCGTGAGCCAGctggaggcagagagagaggatCTGTGTGCTAAGATCCAGGCCGGTGAAGGAGAGGCAGCTGTGCTGAATCAgctgaaagagaaaaatcacTCACTACAGGAACAGATTACGCAGCTGACCGACAAGCTCAAGAACCAGTCAGAGAGCCACAAACAGGCTCAGGACAACCTTCACGAGCAGGTGCAGGAGCAGAAAACCCATCTGCGCTCAGCACAAGACCGCTGCCAGAGTCTAGAGACCACCATCTCTGAGCTTACCACACAGCTCACAGAGAGCAAAGAGAAGATTGCCCAGCTAGACACACAGCTAAAGGCCAAGACTGAGATGCTGTTGTCTGCTGAAGCAGCAAAAAATGCCCAGAGAGCTGACTTGGAGAACCACCTAGAGACtgcccagaatgcattgcaagaTAAGCAACAAgagTTGAGTAAAGTGCAGGCTCAGCTGGAGGAGCAGGGCCGCAGGCTGCAGGAGAAGCAGGAGCAGTGCTCTCAGCTGGAGACCAGTCTGAAGGATAGCCGAGACAAACTGCTGACTGCAGAGCAGAGGATAGAGACACTGGAGACCCAGACCAAGAAAGTAGAGGTAGAATTAACTGAACTCCGCTCTGGAAGAGAACAGGCTCAGAAGGAGCAGCAGATGCGGAAGAAGCAGATCAGTGAGCTGGAGATGAAGACAAAGGAGCTGAACCGTCTTTTAGACTCTGAGAAACAAGGTGCTGCCACCCAGCAAGAGGAGTTGAAGAAGAAAACATCAGCCCTctctgaaacaaaacaacagctggAGAAAGCAGAGCAGGAGCGAGTAACCCTGCAGGCCAGCCTGGATAAACTGACTCAGGAGGGTCAGAAGCGGCAAGCAGAGCTGGATAAGAAAGTTCAGGGACTGAGTGCAGATCTTAAGAAAGCTCAGGAGGAGAAGGAAGCTCTGACTAAAGAAATGGCAACGGTGAAAGAGGCTCTGAGCACAGCTTCTAAAGCTCTCAAAGAGAGCCAGACTCAATTAGAGGCAGAGAAGAGAACCAGCAAGGCCACTTTGGAGGAGAAGGAGAAGTTTTATCAGAAAACACAGCAAGAGcttcagaaaaacacagagacCGCTTCTAAAGAGCTCAGCCATGTCAAAGGTCAGCTGGAGAAATCGATAGAGGCAGAAAAGGGGTTTCAATCTCAGTTTATCGCACTGAACACTCAACTGAAACAGTCTCAAGATAcgctgaaagagaaagaaaacagtgtACAGCAGCTAAAGACAGAGCTGAAGACAACACAGGGTTCTTTAGGCCAGGAGGTGAAGAAGTTTAAGGCACAAGTGTCCGAGCTGCAGACTTCACTCACTAAAAAGACTGAAGAGGAGGCAAAGCTGAAGGAGCAGGTGACGACATTGTCTAAAGATCTCCACTCTGAGAAGAATCGCTGTGCAGAGCTGCAGAAGACCAGTGACAGCACCAAAGAAAGTCTTGCCGCTCTTCAGTCTGATTACTACGGCAAAGAGTCTGAGCTCTCTGCTGTACGCCAGGACCTCAAGGTGTGTGAGGAGAAGCTGGTTCTAGCTCAGGAGGAGCTGGTGGCTAACAGAAACCAGCTTAGTGCTCATGAAACCCAGATCCAGGAGCTACAGACGGCCCGCACAGAGATGGAAAAAGGCCTCAGCAAGAGAGACGAGAAAATCAAACAACAGGTGGAGGCTCTACAGAAGCTCCAACAACAACAGgaacAAACTGAGGAGCAGCTGAAGAAGGAGAAGGCTCAGTGCAAAGAGCTCAAAGAGTGCCAGAGCGTTCTGGAgaaggacaaaaacaaactgtcTGCTGATCTTAAAGCCCTGACTGAGAAGAATGAGAAGGAGCTGAAGGAGCTCCAGGCGGCGAAGCAGCTGCTGATCCAGCAGAAGGTGGAGATGCAGGGGAAGGTGGAGGCGGCTCAGGCATCTCTGGAGAAGGAACAAAGAGAGCATCAGAAGACCAGAGACTCcatcaaacacaaacagcagcaGCTCAAAGCTGAGACAGATAAATTACAACAGCAACTGGCATCAGAAATGAAGGCTAAAGAGGAGGTGGAGAAGCAGAGGGAAGAGGCGGAGGTGAAGATGTCTATGCAGGTGGCGGCACTGAACGAGAACGTGGCGACACTGAAGCGAGAGTGGCAGAGCAGCCAGAGGAGGGTGGGTGAGCTGGAGAAACAGATGGATGAGCTGAGAGGGGAGATTGCCGTGCTGGAGGCCACCGTCCAGAACAACCAGGATGAGAGAAGAGCACTGCTGGAGAGGTGTGTTCAGGGGGAAGGTGAGATTGAAAAGCTTCAGGCTAAGATGTTGGAGATGCGCAGGAAGTTGGATGACACTACAGCCGCCATGCAGGAGCTTGGCAGGGAGAACCAGTCTTTACAGATAAAACAGTCGCAGTCTCTCACGCGAAAGTGGGCAGAAGATCATGAGGTGCAGAATTGTATGGCTTGCGGGAAAGGCTTctctgtcactgtcagaaagCACCACTGTCGACACTGCGGTAACATCTTCTGTGCGGAGTGCTCCGCCCACTGCGCCCTGACGCCCTCCTCCAAGAAGGCTGTCCGAGTGTGCGACAGTTGCTTCGAGGAGCTCCAGGGCTGATCTCCCCTCCCTCCCAAACCCCCGTCCCCCGCAGCCCTCTCTGCACCCGCTCGCCCTGACCTCTCCCGAGGGAACACGAGCAACCAGGAGaggccagcagagggcagaCGCAGAAGCCGCGGGGAGCGCTGAGGAACAGCACGTCACGGTGGTCACTCGATGCTGCCAATCAGATAGAGGGAACACTAAATTAACCCGGCCAGAGCGGCTGTCCTCATCTGTCCAGTGCCTTTGCCACTTATGGGGCCACTTTGAGACCCAGAGGAATCAAAAGGGAGGAACCTCTTGAGCAGATGtaaaatttgtaatataaaaatcagttttgtgcTAAAGCACAGCAGCTTTGGCACTCGGGATTGAGTTTTGCGTTAAAAGATTTGAGTGTAAGAGACGGGGGATCGGAGCGAATCTGTGTAGAACCAAAGCAGGGTCCTTATTTGATATATCATATTTGTAAGTAAATGTACAGACAAAAGAGGCACATGTGAATAATTCAGATATAACTGTCACTCGATGGAGACTTTATCATTGTTCATTCAGTGTGGGCATGTTAACAAGGTATGTGGGTGTTACGTACATGCTTGCTTTGCTGCTCTTATGTCTGTTGAAATGAAACACttgatgtttgttttgcattcatAATCTCACCAGTACAAGTTGGTGATTCTTTTAAAGATTTACGCACacaaatatgtcttttttttgttttcttttatcaatTTGTACATGTTGGATGTACATGTTGCCCTGCTTTTAAGCAATAACCGTGCATTGGGTTTGATTGTGTGATAGTgtattgaaaatgaatgacGGACCGCTGATTGTGTTTGAAATATCAGCTGCTACAATTCTCTTCAACTTGAGAGGTTTCTCTCATTTCCCGCGAGCCAACACTTTATACTAAATGGcgtagttcacctaaaaaagtTCCGTTGTCATTTATTCCCCTTCATGttattctaaacctgtatgagaTTTTCTGTGAGGAATATAAAGGTAGACATTTTGAAGAGTGTTTAGATCCAaacattgacttccattgtatgtTTGACCTTACGATGAAAGTCAATAGGcaatatcatattattttttaagttgaaaAAATAACGTCCATACAATGAAACTCATTGGGAACCAAAACTATTTTacaactttacaaaaaaataagtattttgttgtatgtcttttatgtttagttaccaaaatgcattttttaaaacgtatattttaaagaatgttgagAAGCAAACGGTACCTTGGATGCTTGTCAAATCAAAGTCAGTAGGAACTGAAACTCAGAACattgtcttttttctgtttgttttgcagaacacaaaagaagatatttaaaaaaagataataactAAGAAAAAGTCGACTgcttaccagcattcttcaaagcATCTTATTGTATgccttgtttgtgttttagttaCCAGCATTCTGTTTTGTGGGttaaaaaagaagatattttgaagaatgttgagAATCAAACTTAAACATTATCcgtacaatgaaagtcaatgggagCTGAAACTCTTTAATTCACAATATCTCATAAAACTCAAAGTgcaaaatttaatattttttggtgaactgttcctttattAGAAGCTGAAAGTGTTGTGAGCGTCCTTGTAAGCGCTTGGCGTAGAACTAAATGTGAGCGAGTGCGCTGTAAAGTATGCTTCACCGCATGTGGTTTATGCCATTGCCACATTCTGATGTTTTTGCTTTGCCGAATAGATTGTACGCGGCTTGCGGCGTCGGTGCCACTGTTTGCTGTCGGGTATTGATTGCTTCCTGTTTGTATCGGTAGATGGATTCAGGAGCGTAACGCATAGTGATTCATATGTATCCCAGGATGAATCAAAAGTGTCTCAGGATGTTTCGCGCTCATCACCAGCTCAGTCATGTGACCTGATTTCAGAAAATCGAATAGTTATGAATAACAGCCCTTTAATTGATGTGTGCTGCAGTCGACGACAGTACGATAGAAGCCACTCGGTGCCATGTAACTGGTCAAAACCCTTCAtctgacatcacttcctgttttctcTGACCGTTAACAATGCTGTAATTATTAGCAAAGTGTTTGAAGAAAAACAGGTTGTGCAGCTTGCAAATAAAGCTAATTTGTGACCGCATATGCAAAGTGCATCACTTGTAGGTTTTTGGATCAGCACTACTCACTAACAGTATCTGTTATATGGTTGTCACGCATTATTATTATGGATTGATTCATATATTTTGATGTGCTGAACAGCAGGGTGTTCACGTTCATGTTGTggtaatgtgtttgtgtgccttATATCAAGGTTCGTTTCTGTCACGTgtgcatttttgaaagaagacaGGCACTGGAAGAAAAATCTATCGGAGTATAGTAAATgagttaaaaagttttaataaatattgcatcaTAGTGAATGTGATTTCAGGTTAATTGGTTTGTTTGCCTGAAGGTTCTGACTCAAACGAAAAGCATCTGAACTACGTCACCACCCAAGATTTTttgttgaggaaaaaaaaaaattgttcaatggtattgttttctaaattttcatcatgtttaaaagtaaataataaactagCTGTTTCTATTTTC

Function

GO: NA

KEGG:

id description
K12478 EEA1; early endosome antigen 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190188 lncRNA upstream 25378 24524527 ~ 24525054 (+) True G128863
TU190172 lncRNA upstream 91498 24458719 ~ 24458934 (+) True G128859
TU190169 lncRNA upstream 105233 24444502 ~ 24445199 (+) True G128857
TU190168 lncRNA upstream 107273 24442373 ~ 24443159 (+) True G128856
TU190152 lncRNA upstream 109900 24436038 ~ 24440532 (+) True G128841
TU190464 lncRNA downstream 94230 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA downstream 97263 24667484 ~ 24669844 (+) True LOC122362653
XR_006253144.1 lncRNA downstream 164966 24735187 ~ 24737012 (+) True LOC122362654
TU190615 lncRNA downstream 268841 24839062 ~ 24856231 (+) True G129115
TU190628 lncRNA downstream 430509 25000730 ~ 25000930 (+) True G129127
XM_043264775.1 mRNA upstream 1052 24535296 ~ 24549380 (+) False nudt4a
XM_043264774.1 mRNA upstream 1052 24535298 ~ 24549380 (+) True nudt4a
XM_043264987.1 mRNA upstream 15924 24527211 ~ 24534508 (+) False ube2na
XM_043264986.1 mRNA upstream 15924 24527212 ~ 24534508 (+) True ube2na
XM_043216515.1 mRNA upstream 27945 24512132 ~ 24522487 (+) True LOC122322916
XM_043216669.1 mRNA downstream 13807 24584028 ~ 24588337 (+) False LOC122323037
XM_043216668.1 mRNA downstream 16724 24586945 ~ 24588337 (+) True LOC122323037
XM_043264189.1 mRNA downstream 20682 24590903 ~ 24659950 (+) True LOC122362645
XM_043264194.1 mRNA downstream 101581 24671802 ~ 24675849 (+) True LOC122362651
XM_043264191.1 mRNA downstream 107439 24677660 ~ 24683938 (+) True LOC122362647
TU190171 other upstream 92872 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 813586 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 970630 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2111753 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2143450 22400974 ~ 22406982 (+) True LOC122363143
TU190455 other downstream 13624 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 425550 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 724522 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 724522 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 776184 25346405 ~ 25348594 (+) True mt2

Expression Profile