RNA id: XM_043264715.1


Basic Information

Item Value
RNA id XM_043264715.1
length 683
RNA type mRNA
GC content 0.49
exon number 4
gene id aamdc
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18544363 ~ 18546307 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACGTCACTGAACGGCAGCCAATCAGCGTGAAGTGCCGAAGCGTACGCCGATTTGACGCTGGCCAGTGACGCGCTGGTGGGCGTGTCCCGCCGTCACGCGAAGAGAAACACAACAAGCGAGATTGAATTCCGGGCCGAGGAAAGCTGATCATGACTTCTCCAGAAATTGCTTCCTTATCCTGGGGCCACATGAAGGTCAAAGGTTGCACCGCATCCTACAAAGACTGTAAAGTGTGGCCAGGTGGCAGCCGAGCCTGGGACTGGCGTGAAACCGGTACAGATCATTATCCAGGCGTCCAGCCAGCCGACCTGGAAGAGGTCCTAAGGAAAGGGGTTCAGACTCTGGTCATAGGAAGAGGGATGAGTGAGGCTCTACAGGTGCCCCCGTCCACTCTAGATTACGTGAAGAAGCAGGGTGTTGATGTCAGGGTGTTTCAGACCGAGCAGGCCGTTAAAGAGTACAATGTTCTGGCAGGACAGGGAGCTAAAGTCGGCGGGGTCTTCCACTCCACCTGCTGATCACATCATTCATACAACGAGCtaattcatttgatttgtcGTCCAAAGTGCCTTACATTACAAATTAACATTGTTTTCTTAATTTGCACTCAAACTACTGGAGGACTATTTTCTTGgtgaaaatgttatttgctttataatcattaaatgattattttttgaa

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188186 lncRNA upstream 16021 18527129 ~ 18528342 (+) False G127443
TU188185 lncRNA upstream 16231 18527129 ~ 18528132 (+) True G127443
TU188173 lncRNA upstream 25902 18491997 ~ 18518461 (+) True G127434
TU188170 lncRNA upstream 57092 18485857 ~ 18487271 (+) True G127431
TU188151 lncRNA upstream 192260 18351740 ~ 18352103 (+) True G127413
TU188209 lncRNA downstream 13656 18559963 ~ 18563152 (+) True G127456
TU188216 lncRNA downstream 27512 18573819 ~ 18574354 (+) True G127460
TU188242 lncRNA downstream 100249 18646556 ~ 18646836 (+) False LOC122323076
TU188255 lncRNA downstream 144258 18690565 ~ 18693231 (+) True G127492
TU188269 lncRNA downstream 184383 18730690 ~ 18781704 (+) False G127500
XM_043216920.1 mRNA upstream 20799 18519991 ~ 18523564 (+) True aqp11
XM_043264031.1 mRNA upstream 83554 18393603 ~ 18460809 (+) True hcn4
XM_043264106.1 mRNA upstream 157433 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA upstream 157433 18339200 ~ 18386930 (+) False LOC122362573
XM_043264105.1 mRNA upstream 157433 18348667 ~ 18386930 (+) False LOC122362573
XM_043216726.1 mRNA downstream 100055 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA downstream 102265 18648572 ~ 18652164 (+) False LOC122323076
XM_043216730.1 mRNA downstream 108311 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA downstream 108312 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA downstream 108314 18654621 ~ 18658740 (+) False LOC122323077
TU187968 other upstream 404110 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 616198 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 616198 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 657152 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 732196 17808674 ~ 17812167 (+) False G127239
TU188207 other downstream 14059 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 14059 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 231461 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 231461 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1456697 20003004 ~ 20013786 (+) False wdr59

Expression Profile