RNA id: XM_043264798.1


Basic Information

Item Value
RNA id XM_043264798.1
length 4276
RNA type mRNA
GC content 0.44
exon number 15
gene id arih1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25906919 ~ 25920975 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTAAGCGAGCctaacaactttattttaaaacacgtCTTGTTTTTTGTGTCACGCACATGACGTCACCCAGCGTCGGCCCGTGACGCTGCGTCTCTTTGTTGGCCCAGCAGCGGCGTCGCtccttctgttgttgttttctcagcTCCTAGAAAAACTGGAATGCTAGCAAGCTAAagtgttctgtttttttgttttgctccatctgccaaataatacacattaaacTTGTACCACTTGGCGCGTCACTACATTGAACGCAACCCAGTCATGGACTCAGACGAGGGTTACAATTACGAATTCGACGACGAGGAAGAGGAATGCAGCGAAGACAGCGGCGAAGAGGAGACCGCCGACGACACCCTGGAGCTCGGCGAGGTGGAGTTGGTTGATCCCGTTGTGGCCGGCGGAGAGCGAGACGACTGCGGGGAGACGGGAGGCAGCGGCCTCGGGCCTGGGCAGGATGAGGAAGACTACCGCTTTGAAGTGCTAACTGCCGAACAGATTCTGCAGCATATGGTGGAGTGTAAGGAGGTCAACGAGGTCATCCAGAATCCTGCTACAATCACTAGAATATTACTTAGTCATTTCAACTGGGACAAAGAAAAGCTGATGGAAAGGTACTTTGATGGTAACCTGGACAAGCTATTTTCAGAATGTCATGTTATAAACCCCAGCAAGAAGTCTCGGACACGCCTCATGAACACAAGATCGTCGGCACAGGACATGCCATGTCAGATCTGCTATCTCAACTATCCTAACTCGTACTTCACTGGTCTGGAATGTGGGCACAAGTTCTGCATGCAGTGCTGGGGTGATTATTTAACCACCAAAATCATAGAGGAAGGAATGGGACAGACCATTTCTTGTCCTGCTCATAGCTGTGATATTTTGGTGGATGACAACACAGTCATGCGACTGATTACAGATTCAAAAGTGAAGTTGAAGTACCAGCATTTAATAACCAATAGTTTTGTAGAGTGTAACCGACTGTTAAAATGGTGTCCAGCACCTGACTGTCATCATGTTGTCAAAGTACAGTACCCAGATGCCAAACCTGTACGGTGCAAGTGTGGTCGGCAGTTTTGcttCAACTGTGGAGAAAACTGGCACGATCCAGTGAAGTGTAAGTGGCTAAGGAAATGGATAAAGAAATGTGATGATGACAGTGAGACATCAAACTGGATTGCAGCAAATACAAAGGAATGTCCAAAATGCCACGTCACCATTGAGAAAGATGGTGGCTGCAACCACATGGTGTGCCGGAACCAGAACTGTAAAGCAGAATTCTGCTGGGTTTGCCTGGGGCCCTGGGAGCCACATGGTTCTGCTTGGTACAACTGTAATCGTTACAACGAGGATGATGCCAAGGCAGCCCGGGATGCTCAAGAGCGCTCCAGAGCAGCTCTGCAGAGGTACCTGTTCTACTGCAACCGCTACATGAACCACATGCAGAGCCTGCGCTTCGAGCACAAGCTGTACGCCCAGGTCAAACAGAAGATGGAGGAGATGCAGCAGCACAACATGTCATGGATCGAGGTGCAGTTTCTGAAGAAGGCCGTGGATGTGCTGTGCCAGTGCCGCTCCACGCTCATGTTCACCTACGTCTTTGCGTTCTACCTCAAGAAGAACAACCAGTCTATCATCTTCGAGAATAACCAGGCAGATCTGGAGAATGCTACAGAGGTTCTGTCTGGATACCTGGAACGAGACATCTCCCAAGATTCTCTGCAGGACATTAAGCAGAAAGTACAAGATAAATACAGATACTGTGAGAGCAGACGGAGAGTGCTGCTGCAACACGTACATGAAGGCTATGACAAAGACCTGTGGGAGTACATCGAGGATTGAGGCTACATCTCCACACCACAGACTCTCGGAGACAAACTCCACCCACTAGAGCGCTGATGCAATGACAACAGAGCAGCACAGACCTCTGCTGCCTCCTCCCTGGCAAACCGCCCTgcattgcataatttttttttccagatttttgtTTCAAGAAAAGCATAagagtaaattatatttaaatgaaaaagttagaatattaaaaataaaatattacatgttcAACAGTATTGTTAGCAGCGTGAAGCGCAAGACTGAGAAATCCAACAAAAAGGCGAAATATCTTTCTTTTGCTTGCATTGTGAGATCTTGCCCTCGGAAATCTTTTCCCtccttatcagttatgtttgtGGACGTGTTctgtttgactttattttatatactctttttttttttgtgtgtgtgtggaaaatgaactttgttttcaaaatggCTTTAATCATTTTGAACGTGTCTGGCGAGATCCGTGTGTGGGTTGCCGAATGTCGATTGGATGATTGTAAGGAGGCGACTTTTTGGCTTACAGACGTTAgtggaatagaaaaaaaaaacaccaaaaaaagagagagagagagagagagataaaatcggtatttttcaatttgtaaatatgcatatgcatggAAGTTAAAGAGTAAGAGTGGCATGtgtttgcatcatttttaaaagatatttatctttacagatattaaaaaaaaaaatgtatatttgctgTGTAGATTGAGTGTCTTTCCCTATCTTGGATCGCCCCTCTGAAGAGGTTTGGACTTGACACATGCTTGACGTAAACCGGCAGTCCGTGTCTCTCCCTCCGCTCCTCCCCTTTGCTCCACAAGGCTACATTCTGCCAAATCGAGCAGATCATGCCAAGGTGGCGCTTTTCTGCCTGCTAGGAGTCTTGTGAGAGCTTCTGGCTTTACGATTGGAGGAAATGGGGGTGGTTTAACGTTCGCTGCTTTTTTCCAAGAGttcaaacttttaaaacagCAGCGGTTTCCTCTGCTCTGCCTCCTTTGCTGTTATTCTGCTCCCTCCTCCTAGGTAGATTTAGTAACGTAATATGATTTTAAGAGTTATATGAATAATTTCTGAGAGCCAAACTGAGTGACATTCACTCATataacctttttatattttttctttttgtctctctgAAGTTCATTCTTCGACCCCGACCCCGGCTCGAGGTTCTTTCTCCGCCCGCCCAACATGCTTGTTGATGACATTGCAGCGATGGGCCTGTTGAGCTGCTTTCTTGACATCCGTTGTCAAGCGTTCCGACTGAGCCATTGACAAACAGGGTTAGGCATTTTCCACATGATCGATTCTTTTGCACACCGCAGAACTAGTAGTCGGAAGCCACCGTTATCTCTGCTGCGAGGTTCCATGCcgctttaattaattttgtgtaaaataatcaCGTTTGCACCTGGGATGGTTTCCAAAGGGCCGTTTTGAGTCATGATATAGTTTGCAGGGAATATGTGATGTAACCTTCGTACTGTGATGTTGCATTTGTGTACACTTTGTTCATGCAGAATTGTACAAATTGTGTGTGGACGCACCACGACCATCGTTGAAGCACTGAGACCCTGTCATCGGGGGTACAGGGGCGGGGGTTCTGGGATAGACACAGATGGGACAGTGGCGTTGCAGATCAAGTTGGCCTATTCAGACAACACCAAAGTGTCAATCTCAAACTGATGATTTCTTAACCCCCCCCCTCCTCACTTTCTGTTGGAAGTGTGACTCATTGtggcttttcatttttgattttcttttctacTTCAGATGTGCTCCATGAAAATAAATGTCCTGAAATGCAttcttcatttaattaatagtaTTCTCTTGTGTTTTTGCCTGTTAATCCTTTTGCTTTGTGTGCTGGGAAtgattgcaatttttttttttttatgtaagtctTTGTAATATGCCATGGATGAGTGCTGAGATGGTCTTCCAGGTATAGACATACATGCTTTGACTATTAAATGGGAATTGGAAATTTCTGCAAGAACATGAAATAGGAAAGTCTGTTTTGTAGGTTCCCGTGGTTTCTGTTACAATGGGACACGGAATGATCTACAAAAACATGGAATGGTTCTACTGCCCCTGTATGCAGCATAGTGTGTGTTTAACTGTCTCCTTCAGGCCACTTTGCTTCTCAGTTACGCCTATTTGATCATGTCTGCTAGTTCATGAGCATCCAAATTTAACATTCACGGTAATAAAAAGCAGCTACTCTCATTTTGTTGAGACATCCAAAAACTTTTAATACTTTTCTACATGTATCCTTTCTTTATgcgattaaattttttttttttttttgatttcttaTATACATAGTGTACAAATGTGTAAGAAATTAGTTGTTCGttttgaagaaaacaaatattaaagtgcAAAATGTTGCAAACATTGCTTTA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11968 ARIH1; ariadne-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191014 lncRNA upstream 230058 25676557 ~ 25676861 (+) True G129370
TU191012 lncRNA upstream 231609 25675071 ~ 25675310 (+) True G129368
TU191004 lncRNA upstream 243334 25662497 ~ 25663585 (+) True G129360
TU190852 lncRNA upstream 464478 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 557881 25348756 ~ 25349038 (+) True G129262
TU191118 lncRNA downstream 46041 25967016 ~ 26221023 (+) True G129435
TU191132 lncRNA downstream 235932 26156907 ~ 26158502 (+) True G129438
TU191110 lncRNA downstream 239050 26160025 ~ 26160419 (+) True G129427
TU191140 lncRNA downstream 291955 26212930 ~ 26213344 (+) True G129446
TU191154 lncRNA downstream 308119 26229094 ~ 26284050 (+) True G129454
XM_043216558.1 mRNA upstream 4004 25897542 ~ 25902915 (+) False LOC122322950
XM_043216559.1 mRNA upstream 4004 25897551 ~ 25902915 (+) True LOC122322950
XM_043264348.1 mRNA upstream 31187 25854441 ~ 25875732 (+) True st3gal2
XM_043264347.1 mRNA upstream 31187 25854441 ~ 25875732 (+) False st3gal2
XM_043264349.1 mRNA upstream 31187 25863125 ~ 25875732 (+) False st3gal2
XM_043264335.1 mRNA downstream 19754 25940729 ~ 25943948 (+) True hacd3
XM_043264898.1 mRNA downstream 31355 25952330 ~ 25962581 (+) True slc24a1
XM_043264163.1 mRNA downstream 270029 26191004 ~ 26196388 (+) True LOC122362626
XM_043264250.1 mRNA downstream 379941 26300916 ~ 26303177 (+) True LOC122362692
XM_043264251.1 mRNA downstream 379941 26300916 ~ 26303177 (+) False LOC122362692
unassigned_transcript_2193 other upstream 9414 25897423 ~ 25897505 (+) True trnal-cag_32
TU190830 other upstream 558325 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 598854 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 598854 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 910969 24995771 ~ 24995950 (+) True LOC122323238
TU191105 other downstream 292 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 31423 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 308119 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 382912 26303887 ~ 26306806 (+) True G129468
TU191155 other downstream 409497 26330472 ~ 26332010 (+) False G129454

Expression Profile