RNA id: XM_043264819.1


Basic Information

Item Value
RNA id XM_043264819.1
length 5138
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC122362983
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22623124 ~ 22636865 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCATATTGAACCGGCTGAGTGCGGAGAACGCTGACGAGTTCAACTTTGTCCGCTCATACGAGTGTTTCCAGCACAAAGGCCACACGTGTTTGGTGTTTGAAATGCTCGAGCAGAACCTTTACGATTTCCTGAAGCACAGTAAGTTCAGCCCACTGCCCCTGAGGCACATCCGGCCCATCCTGCAGCAGGTGGCCACGGCCCTGATGAAGCTGAAGAGCCTGGGTCTCATCCACGCTGATCTGAAGCCTGAGAACATCATGCTGGTGGACCCCATCCGACAGCCCTACAGGGTGAAGGTCATCGACTTCGGGTCAGCCAGTCACGTCTCCAAAGCCGTCTGCTCCACTTACCTCCAGTCCCGCTACTACAGAGCCCCTGAGATCATCTTGGGTCTGCCTTTCTGTGAAGCCATTGACATGTGGTCATTGGGTTGTGTGATAGCAGAGCTCTTTCTGGGCTGGCCGTTATATCCAGGAGCTTCAGAATATGACCAGATTCGGTACATTTCTCAGACGCAGGGATTGCCTCCTGAGTACCTCTTGAGTGCTGGCACAAAGACGAGCCGCTTCTTCAACAGAGGACCAGACTCCAGCTACCCACTGTGGAGGTTAAAAaccCCATCGGAGCATGAGGCAGAAATGGGCGTCAAGTCAAAAGAAGCGAGAAAATACATCTTCAATTGTTTGGATGACATGATGCAGGTCAATCTGCCGACTCATTTAGAAGGAACTGACATGTTGGCGGAGAAGGCGGACCGTCGGGAGTTAATTGACCTGCTGAAGAGGATGTTGAGGCTGGATGCTGATAAAAGAATTACACCCACTAAGACCCTGGCACATCCGTTTGTGACCATGAGCCACCTGCTGAACTTCCCACACAGCTCACATGTGAAGTCGTGCTTCCAGAACATGGACATCTGCAAGAGAAGGAACAGTAGCTTTGACAGTGGGAAAGCCCTGTTTGCTGCTAACGCTGTTCCTGGAGCTGCAGGAAACCTGACTGTGACCTTCAGCAGCCAGCTGAACCAGCACAGCCAGGTTCCATCTGCTGGTGGAGCTGTTCCTCTCCTCAACTACCAACCAGCACTTTACCAGCAGGCCACCATAAACATCCCAGGCCTGGCCCAGCCCAGCATCCCTCTGCAGACCCGTCCTACTCAGCTGTGTGCTCAGCCTGAACCTTTCCAGCAAACCCTCATCGTCTGCCCCCCCACCACAATCCAAGGGCTTCCATCTTCTAATAAAACCTCTAGCTATCCTGTCCGGGTGGAGAACGGTGTTCCTGTTGTCCAGCAGAACCAGTCCACTCAGCCTCTTCAGATTCAACCCAGCATGCTGACGCAGCAGGCCTGGCCGTCTGGTACTCAACAGATTCTCCTTCCGCCGGCTTGGCAgcagctcacacacacctccattCAACACGCCACCGTCATCCCCGACTCCATGACCAGCTCGCAGCCTCTGGCCAACTGGAGGAATTCACATCCCCATGGCAGCCATTACAATCCCATTATGCAACAGCCAGCCTTACTGGCAGGTCACGTCGCCCTGCCATCCCAGCAACCTCTCAATGTGGGTGTTGCTCATGTCATGAGACAGCCATCAAGCTCCTCCTCCAAAAAGAACAAGCAGCACCAGATGAACAACAGGAACCTGTCAGCATACGACGTGTCCTCCACCCAGCCGGTGACGTCACCTCAACGCTCCAAACGGGTGAAGGAGAATACCCCTCCTCGGTGCGCCGTGGTTCAAAACGGCTCGTCCTCAACCTCCGGCCCATCACAGACCTGcggaggtggtggaggaggagggtgGGGAGGCGAGCAGGCATGTAGCACCACTCGAGACCACCACGGTCAACACAACCCACCGCGCCAAACCATCGTCATCCCTGACACCCCCAGCCCAGCCGTCAGCATCATCACCATCAGCAGCGACACGGATGAAGAGGACGACCTGAAACAGCCCAGTAACACCAGTACGTCATCCAAACAGAGGAAGaatgtcatcagctgtgtgacGGTCCATGACTCCCCTGACTCTGACTCCAGCAATACCAGCCCGTACGCTGTGGAGTCCCGACCTAATGGCCCCAATGCCAACGGCTACGACTCCAAAGGCGCTGTCCTGGACAACTACAGCAACGGAAACCCCCGCACCATCATCATCCCACCACTAAAGAGCCAGGCCAGCGAGAATCTGGGAGAGTGTGACAGACTCCTGCCTGACATGGTGAACCACCAGAACGCCACCTACAAGTTCAAAACCTCCAATGGGGGCTTGTCTGGCAACAACCACTCTTTGGGAGGCGTGGCTGGAGGTGTGTCATACAGGCAGCAACGCACAGGGCCACACCCCTTTCAGCAGCAGCCTCTAAATCTTAGCCAGGCCCAGCAGCACATGGCAGTTGAGCGCAGCGGAGGTCACCGGCGCCAGCAGGCTTACATCACCCCCACTATGGCCACCCAAGCTCAGTACTCCTTCCACAACAGCCCCACCCACACAGCTAACGTTCATCCCCACCTGGCTGCTCCTCATCTGCCCGGGCAGCCACACCTCTATACCTACACTGCCCCCACGGCCCTGGGCTCCACCGGTACGGTGGCCCACCTGGTCGGGTCGCAGGGTTCGGCCCGTCACGCGGTCCAGCACGCTAGCTACCCGCCAGGCATCGTCCACCAGGTGCCTGTTAGCATGGGCCACCGTGTGCTGCCCTCGCCCACTCTGCACCACGGCCAGTACCAGGCCCAATTCGCGCACCAGACCTACATCAGTGCTTCTCCTGCCTCCACTGTCTACACTGGATACCCGCTGAGCCCCACCAAGATGAACCAGTACCCTTACCTCTAAAGCTGAAACACTGGAGCCCAGCCAATCGCTGCTTACTATTTCTACCCTTATCCCAcctagagacagagagacatgcTGAAGCCTATCGACCCTTAACCCCATCCCCTTGTTCCTTTCATGCTTAAACTTGAAGACAATGAAGACGCCGATGGATAGAGGAAGTGTACACTCGGAGGGAACGGAAGGGTACTGAggagtctttttttgtttttgttttttttttttaagatgagttCGCCTTCTCAAAAGGGCCAGTTaacgttttattttgtgatctggaggttttgtttcttttataacAGAAGAAGGAGATTTTGCTTTCGTAGTTTCTTTTACAACAAGGTCTCATCAACAGGCCGTTTGGGAGAGACAGAGTTTAATTCAAGGGagattttatttgcttttccCTTTCTTGAATTCATTCACCGACTGTTGAGCCGAGGTCACGACCTGGATGTTTTAAATTCTtaggagaatttttttttggataaggTGAAATACGGATATCTGCTGctcttcaaagaaaaaaaaacataacgaTGGCCTTGAACTGTCTTAAACGTTTCCAAATTACATGCGGCGAGCGGTATCGTGCATATTCCGCCGCGATCTCCGACAAAAAACACCTGGAGGAATCTTCTGGAAATAGGACGACAAAACTTTCTAGTGTATTTATagacttttctttgtttgtgttcacatttagaaaagaaaatgcgTTTGTCATACCGTAGAACATTAGCTGGGCCCCTCTTTGTAGAATGTAGCAGTCTGCACCCGTTGATttcatgaagaacctttctgaTACCAATAGAttcttgtttttcctcttttaatGTGATTGCACAAAGTGGTTACAATAACATAGGCATGTTCAACACGGTAGTCGGTTGTGCGTTTGCGTGCATGTGTGCGCTCAGCGCATCTGTGCGACATATTCCTCCACAGTCTTAGGTTTATCATTGTTACCTCGTAGTGCCTTACATATATTACGACAGTTTACTTGGCTGGAAACCCTCTAGAACCAGATGCTAGTCAGAGAGTTGGCTCCTAGGTTGAACATCTTCATTCGAGCtgtttcgtgtttttttttaatttccaggTATAAGCGTTAGCCCTAAACGTTATTTAAATGCTTCTCGTTTAGTGTGCATGAAGTCTTCTACATTTAAAGATAAAGATACTTGCCTGGGGTAACGAACCAAAGTCGTCATTTAAAGATAAGTAACTTTTGTTCTAGATAGtggatataattatatatagcGTATTTACTGTACATATGCATTTTAGTACTTGCAATCAATGCAACATCACTGATTTAGGCTACATATTTCATAAAAGGGAGATTAAATGTATATCTGATGGGAAAAGCCAAGTATCGTTCAATTGGTTTGAGATCGGGCCGCACTATTTGTCTAAAATTCAAAtaccaggtaaaaaaaaaaaataccaggTTTGAGGAGGTTGTCTGTTTACGGAAGGCTTGACTTGGTTTAGAAACCTGGGAGGGTTTGAGAAGGAGAGTCTTGTTAGGAGTAGGAGGTGCTTGTGGATTTTGATAGGAACTGCTGGGAAAGCAAGAGGGCAAATTCCACATTTTTATGAGAATAGCATGTTGGCTTTGAGCACGTTGGTAGATGCCGAAGGAAGCCGTGCAGTACGACTGCACACCATACTCTGATTTAAGCGCTCGTTCGAGGTTCTACGAAGATCTGTGGGGTTTTTATTCTCACGTACACTCCGGGGTTCGAACTGCCCCTGGTTGCATGAGGATGTCTGCAACAACATGCACCGGAAAACAATACTGGCTTTGTATTTTTCACTATTTGTCTTACCGTAGGAATCACTTATGCTACAGGTGTCAGTCAGTACAGAGATAACAAAAGTGTAGAAAACTGTGGGCCAATGCTTGtctttttttgctgcttatttaaCATTGATATGCTAGCCAATCATTTACACAGTGTCCTAACCATGTGCTCTGCAATAacgctattaaaaaaaaaacaagaaaaatttaTATCAGATacctttcaaatgttttgggtaaattaaatgtttctttttgtaaagaaatgaatacttttgttaagtaaagatgcattaaattgaccaaaagtggCAATAAAGACACACAGAGATCATGATGAAAGACATTtgtatttcagataaatgctgttcttttgaacattctatttatcaaagaatctcggataaaaaagtttttttcagtttccacaaaaatattaagcagaaataataaattaatgtttcttaagcaccaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0045634 regulation of melanocyte differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253164.1 lncRNA upstream 59920 22560391 ~ 22563204 (+) True LOC122362810
TU189515 lncRNA upstream 71510 22550445 ~ 22551614 (+) True G128385
TU189508 lncRNA upstream 79591 22536775 ~ 22543533 (+) True G128379
TU189576 lncRNA downstream 304717 22941582 ~ 22944126 (+) True G128431
TU189596 lncRNA downstream 357233 22994098 ~ 22994341 (+) True G128451
TU189598 lncRNA downstream 358886 22995751 ~ 22996031 (+) True G128453
TU189600 lncRNA downstream 360899 22997764 ~ 23001633 (+) True G128454
TU189604 lncRNA downstream 365570 23002435 ~ 23002655 (+) True G128458
XM_043264390.1 mRNA upstream 936 22583917 ~ 22622188 (+) True LOC122362807
XM_043264389.1 mRNA upstream 98952 22498257 ~ 22524172 (+) True LOC122362804
XM_043264387.1 mRNA upstream 155865 22452696 ~ 22467259 (+) False si:ch211-260p9.3
XM_043216753.1 mRNA downstream 31332 22668197 ~ 22762542 (+) True tmtc2b
XM_043265061.1 mRNA downstream 180492 22817357 ~ 22849043 (+) True bicd1a
XM_043265063.1 mRNA downstream 180492 22817357 ~ 22849043 (+) False bicd1a
XM_043265062.1 mRNA downstream 180492 22817357 ~ 22847451 (+) False bicd1a
XM_043263892.1 mRNA downstream 213061 22849926 ~ 22889500 (+) False fgd4a
TU189495 other upstream 184445 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 216142 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2066497 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2073806 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2535543 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 820235 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1087771 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1812900 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1946980 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 2358906 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile