RNA id: XM_043264896.1


Basic Information

Item Value
RNA id XM_043264896.1
length 5947
RNA type mRNA
GC content 0.49
exon number 8
gene id znf423
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25471074 ~ 25612128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAACCCGAGACGATGGCACCAGAACAAGGAGCGCAAAAATCGAATCCAGTCCGTCTTTTTTCTTGCGCGCTGCAGAGTTTCCTCGAAGCTCCGTGTTTTGGCCCCGATCCGTGCTCCAAGTTAAGCTGTAGTTTCCATGGCTGACCATGGTTTGGTGCTGTTggctctctctgtctgctcaACCCAGGCTGTGCGGAGCTCCCTGCGGGATCAGAGCGCTCCCCCGCCGGGACCCTACTCTCACATCCTCCTGCTGGGACACGGCTACATTTCCAGCCAAGCCTGGCTTTATTATGTGTGTCTGCGCTGCAGCCCCGCCAGCAGTCGGATCGGGAGGCGGAGGGAAGACCAGAGTCAGGACAAagaaaaagggagagagaggctAGCGACTAGAAATATTTACGGCTTTTAGGACgataaacaacaacaagaagaaAAATTCCCCCAGGTAAAAATGCTGCGTAAAATGCCATTGAGAGTGGCACCTTCGGAAAAATAACAGCGAAGGAGGGCGGTTCGGCGGGATCTCAACGAAAAGAGACAGTTGCGACAACTGCGAAAAGGAGGAGAAACATTGCGAATCAATTCCGAAACACCGTCGAAGTGGCTTTAGCACGTTATCGGCAAGTATTGGCACCTCTCGCCACTGATCAGGTGTAATTTGGGCACGCTCCGCTTCTTCAAACTCTGAGCGCGCGTGCCCGCTCCGCCGTCAGCGTCTGCCGTTACGGAGGAACAAAAGAGCGTTCGCTTCTCGAGCACGGGAAAAGCCGCAAGTTATTCGTTAAATCTACAGGTTGGAGAAGTTCAATCGTTGGAATATCAGTTTCCATCGCCGTGCTCTCTCTTCCTTTGAACGCTTCTGGACTAGCGAGACCGAAGTTGCCGCATTGCAACAGGCAAAGTGAAGAAATCTCCCAAGTATCGGCGCGTGACCTGTCAATATTTCTCGGGGAGGACAAGATACCTgttaaagaaagtaaaatattGTTGTTAACACGGAGATGTCTAGACGCAAGCAGGCCAAACCGCGCTCCGTTAAAGCGGTGGAAGAGGCTGAATCTACAGAGTGCGCCAGTGGTTGGGACTCCTCTGTTCAGACAGaTGCAGCAGTATCAGAGCGAGACTCTGATAGAAAGGAGAGCCGGGCGGCGGGTGAGGACGGAGAACAGAGTGTGACCAGTCATGACGAGAGGGTGGGAGAGGAGGATTTAGATGACGACTCCATCTTCACCTGTGACAACTGCCAACAGGACTTTGAGTGCCTGGCAGACCTGACAGAGCACCGTACCAACCACTGCCCAGCAGATGGTGATGATGACCCGGGGCTCTCCTGGGTGGCGTCCTCTCCCTCTAGCAAAGACGTGGCATCGCCGTCACAGATGCTAGGGGATGGCTGCTGCGATATGGGCATGGGCACAGGGGAGGAAGAAGGGGGCTCTGGCCTGCCTTATCCCTGCCAGTTCTGCGACAAGTCCTTCAGTCGCCTCAGCTACCTGAAGCGCCACGAGCAGATCCACAGTGACAAGCTGCCCTTCAAATGCACCTTCTGCAGTCGTTTGTTCAAACACAAGCGCAGCCGTGATCGTCACGTCAAGCTGCACACTGGTGACAAGAAGTACAGTTGCCAGGAGTGCGAGGCAGCATTTTCTCGCAGCGATCATCTCAAGATCCATCTCAAGACACACAGTTCCAGCAAACCATTCAAGTGCAGCATTTGCAAACGTGGCTTCTCTTCCACCTCCTCTCTCCAGAGCCATATGCAAGCTCATCGGAAGAACAAGGAACACCTGGCAAAGAAAGACCAGGGTAAGCGAGATGGATCCAGCAGTGATGTAGCTGACCAGGACCAGGACCTGTACATGTGCGATTACTGCGAGGAGACGTTCAGTCAGACAGATGAACTTGAGAAACACGTGCTGACTCAGCATCCCCAGCTCTCAGACCGTGCAGAGCTTCAATGCATCCACTGCCCTGAAATCTTCAGTGATGAAGGCACTCTACTCACTCATATTGACAGAACGCATGCCAACAAGAAACACAAGTGCCCCATGTGCGCTGAGCAGTTTCCATCTGTAGAGGAAGTCTATTGCCATCTTGACAGCCACCGGCAGCCAGACTCCAGCAACCACAGTGCCAGTCCTGATCCAGTCTTGGGAAGTGTGGCATCAATGAGCAGCGCTACCCCTGATTCCAGTGCCTCCCTTGAGAGAGGATCAACCCCAGACTCCACCCTTAAGCCTGGACAGGGCAGACGAAAGCTTGCACCTTCTTCTGATCATGACGATGGAAGCTGGTCTGGCAAAGTGACCTACAGTTGTCCATATTGCTCCAAGAGAGATTTCAACAGCCTGGCTGTCCTGGAGATTCATCTGAAGACTATCCATGCAGACAAACCTCAACAGAACCACACTTGCCAGTTATGTCTGGAAACCCTGCCTACTCTCTATAACCTTAATGAACATGTGCGCAAAGCACACAGATCCAGTGGGAGCTCTGCATCAAACTTTCCACTTCTGCAGTTCAGTAATGTTTCGGCCTTTCATTGCAACTACTGTCCTGACATGTTTGCAGACATCAACAGCCTGCAAGAACACATTCGCGTTTCTCACTGCTTATCTGGTAGTAGTGTTGTTGCAGGATCCACCACGTTGGAGGGCAACCATGCTTTCTTCTGCAACCAGTGCTCCATGGGTTTCCTTACAGAGTCTTCACTCACTGAGCACATCCAGCAGACCCACTGCAGCAGTGGGGGAGGTGTGACCAAGATGGAGTCCCCAGTCTTGCAGCCCTCACAGTCCTTCATGGAAGTGTATTCTTGCCCTTACTGCACCAACTCTCCCATCTTCGGTTCCCTCCTCAAACTCACTAAACACATTAAAGAGAATCACAAGAACATCCCCCTTGCCAACAACAAGCGCAAAGTCAAAGTAGCAGACTTGAGCCCAGCCTCATCTGACGTCGAAATATCCTCTCCCAAACGCCATAGGGTAACCGGTGACAGCACTCCAGCAGTGGCTAATGGAGACTATCCCTGCAATCAGTGTGACCTTCGATTCACCAGCTTTGAGGGCTTCCAGGCCCATCTCAAATCCCACCTGGAACTGTTACTGAGGAGGCAGTCCTGCCCACAGTGCAACAAAGAAGACTTTGATTCTCAGGAGGCACTGCTTCAGCACTTGACTATTCACTACACCACCACTTCCACCCAGTATGTCTGTGAGAGCTGTGACAAACAGTTCTCTTCTGTAGACGATCTGCAAAAGCACTTGCTAGACATGCATACCTTTGTGCTGTACCACTGCACACTGTGTCAGGAGGTCTTTGATTCAAAGGTGTCCATACAAGTTCACCTGGCTGTTAAGCACAGCAATGAGAAGAAAATGTATCGCTGTACGGCCTGTGCTTGGGACTTCCGCAAAGAAAGTGACCTGCAGTTACATGTGAAGCACAGTCATTTGGGTCACCCTACCAGTACTGGGACAACTGGAAAAGCACGCAAATGCATATTCTGTGGGGAGACCTTTGGCACAGAAGTAGAGCTCCAGTGTCACATCACTACTCACAGTAAAAAGTATAACTGTCGGCTCTGTGGGAAGGCCTTCCATGCCATTGTCCTTTTGGAAAGACATCTCAGAGAGAAACATTGCATTTTTGATGGAGGAAATGGCAATGGAAATGGAGGAAGCCAAAATGGAACGCCCAATGGGGTGACTCAAAGCTCTAAGCGTTCCACAGCAGGATCAACTGCAGCTGCTGAGCAAGCAGATTTGCAGAACATGCTATTAAAAGGAGGAAATCAGGAAACAGTGAACAGCCATGAAGCTAGCGGTGGAGAAGAGGAGCTTGATGCCTCAGAGCCAATGTATGCCTGCGACATCTGTGGTGCGGCCTACACCATGGAGTCTCTGCTTCAAAATCACCGCCTTCGAGATCACAATATCAGGCCTGGTGAGGATGATGCAGGCTCAAGAAAAAAGAAGGCCGACTTCATCAAGGGTAACCACAAGTGCAATGTTTGCTCACGGACCTTCTTTTCTGAGAATGGCTTGAGGGAACATGCTCAGACACACCGTGGTCCAGCAAAACACTACATGTGTCCCATCTGTGGTGAACGCTTCCCTTCACTGCTTACTCTCACTGAGCACAAGGTCACCCACAGCAAGAGCCTGGACACAGGCACCTGCCGTATCTGTAAGATGCCCCTGCAGAGTGAGGAAGAGTTCATTGAGCACTGCCAGATGCACCCTGACCTGAGGAACTCCCTCACAGGCTTCCGCTGTGTAGTTTGCATGCAAACAGTCACTTCAACGCTCGAACTGAAGATTCATGGAACTTTTCACATGCAGAAGCTCTCATCTTCTGGGGTCAGTGGTGGAGGGGGAGGATCAGCCTCATCATCTCCCAATGGCCAGCTACAGGCCCACAAACTCTATAAATGTGCTCTGTGTCTCAAAGACTTCAAGAATAAGCAAGAACTGGTCAAGATAGATGTGAACGGCCTACCTTACGGTCTTTGTGCTGGTTGCATGAGTCGGGGTACAAATGGCCAGTCCCCAACTGTTGTTGTCACTCCACAAGAGGCTGGGGAGAAGGGCACCACTGGACTGCGCTGCCCAGAGTGTGCTGTTAAATTTGAAACCCTGGAAGACCTGGAAAGCCACGTTCAGGTGGACCATCCTGAGATGAGCCCTGAGACCAGTGGAGCTAAGAAGGTTACTGATGCTTCACCTGTCCCTAAAAAGAAGACCTATCAGTGCATCAAATGCCAAATGACCTTTGAGACAGAACGAGAGATCCAGATCCATGTTGCCAATCATATGATCGAGGAAGGCATCAATCATGAGTGCAAGCTGTGTAACCAGATGTTTGACTCTCCGGCCAAGCTCCTGTGTCACCTGATCGAGCACAGCTTCGAGGGCATGGGAGGCACCTTCAAGTGTCCCGTCTGCTTTACAGTGTTTGTTCAGGCCAATAAGCTGCAGCAGCACATCTTTGCCGTCCACGGACAGGAGGACAAGATATACGACTGCTCCCAGTGTCCGCAGAAGTTCTTCTTCCAAACTGAGCTCCAGAACCACACACTGAGCCAGCACGCACAGTGAGACCGGGCCCCGCAGGACTCCCGGTTCAGCCTAGAACCCCGACCCAGGCCCGGTGGGGGAGGAACATTTCAACATCACAGCCAATCAAAGTGTCATTTGCTACTCACATGTAAAACTCTAACGATTCCGCCACCAGGCGCAGCTATTACGAACGGTGGGGAATGAATATTAATGGGATATgctattaaaaaagaaaaggagagaaaaaaaggagatggagagaaaaaggtatTCTACGTGCAGTATTTTTTATCGTCCCTTCTTCCTGGTTGTGTGTTCCTTATTTTCTCCccgttttctttttgctttttcttgcttttttttttttttttttggggacaaaagatggaaaaaaaaaaaacaacggaTGGAAAAGACACCCTCTGCCTGATTTTAATCTCTAGAAATACATATCTTGTCCTTTGTTGCTTCATGTATCAAACTTCATACGTGccaattttgttctttttcaatGCATATATTCTCAGCccttttatttgttgatttatttgtaCCATTTATTTCTTGCAGTAAATAGGTACTTGTGCTGTGCTGTGATTGCTTGCCAGTCGTAATATTTTTCctttctattattattgttatatattttcttttttctaattacagtaaaaagacaaaaaacatataaagaaaaaagttaaaaacataaTGGTTTTGATTGGATTTTCCAGTACATGGGCCTTATGGATGTTGTAAAAATGAATATCATTGATTTCAGTGCAACTGGATGATgtctgctttttaaatgtgaattaacCAGATTGCAATAAACTAGTACagttgaaaataaacaaataaataaatcatgaataAAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190852 lncRNA upstream 28633 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 122036 25348756 ~ 25349038 (+) True G129262
TU190829 lncRNA upstream 123794 25346405 ~ 25347280 (+) False mt2
TU190813 lncRNA upstream 182537 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 329215 25063454 ~ 25141859 (+) True G129135
TU191004 lncRNA downstream 50369 25662497 ~ 25663585 (+) True G129360
TU191012 lncRNA downstream 62943 25675071 ~ 25675310 (+) True G129368
TU191014 lncRNA downstream 64429 25676557 ~ 25676861 (+) True G129370
TU191118 lncRNA downstream 354888 25967016 ~ 26221023 (+) True G129435
TU191132 lncRNA downstream 544779 26156907 ~ 26158502 (+) True G129438
XM_043264494.1 mRNA upstream 6971 25457998 ~ 25464103 (+) True si:ch211-216l23.2
XM_043264491.1 mRNA upstream 6971 25457998 ~ 25464103 (+) False si:ch211-216l23.2
XM_043264493.1 mRNA upstream 6971 25457998 ~ 25464103 (+) False si:ch211-216l23.2
XM_043264495.1 mRNA upstream 6971 25458425 ~ 25464103 (+) False si:ch211-216l23.2
XM_043264490.1 mRNA upstream 13787 25446379 ~ 25457287 (+) False rspry1
XM_043216491.1 mRNA downstream 2085 25614213 ~ 25639371 (+) True si:ch211-212o1.2
XM_043216492.1 mRNA downstream 2315 25614443 ~ 25639371 (+) False si:ch211-212o1.2
XM_043264112.1 mRNA downstream 44516 25656644 ~ 25662430 (+) True cbln1
XM_043265011.1 mRNA downstream 160007 25772135 ~ 25782486 (+) True n4bp1
XM_043264933.1 mRNA downstream 175206 25787334 ~ 25803910 (+) False siah1
TU190830 other upstream 122480 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 163009 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 163009 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 475124 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 883029 24583845 ~ 24588045 (+) False LOC122323037
unassigned_transcript_2193 other downstream 285295 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 309139 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 340270 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 616966 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 691759 26303887 ~ 26306806 (+) True G129468

Expression Profile