RNA id: XM_043264956.1


Basic Information

Item Value
RNA id XM_043264956.1
length 2164
RNA type mRNA
GC content 0.50
exon number 9
gene id dnaja2b
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20364731 ~ 20371597 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCGCCGACTCGGCGGCGCGCACGTGACGTCACGCAGCCGGCTTTCCTCTCTCGCTCCCGCTCCTCCTCGCGCAGCTGCCGCACCGGTCTGCAGACATGGCGAACGTCGCAGACACCAAACTCTACGACATCCTCGGAGTGTCTCCGTCGGCCACCGAAAACGAGCTCAAAAAGgCATACCGGAAATTAGCAAAAGAGTACCACCCTGATAAAAACCCAAATGCAGGTGACAAGTTTAAGGAGATCAGTTTTGCCTACGAGGTGCTGACCAACCCGGAGAAGAAGGACTTGTATGATCGGTATGGGGAGCAGGGCTTGCGTGAGGGTGGCGGCGGCGGAGCAGGAATGGAGGACATCTTCTCTCACATCTTCGGCGGAGGTCTGTTCGGCTTTATGGGCGGCCAGAGCAGCAGGAGCCGGAACGGTGGCCGGCGGAGAGGAGAGGACATGATACATCCATTGAAAGTGTCTTTGGAAGATCTGTACAATGGAAAAACAACCAAGCTGCAGCTAAGCAAGAACGTACTCTGCAGTGCCTGCAacggTCAAGGGGGTAAAACGGGGGCCGTTCAGAAGTGTGCCACGTGTCGGGGCCGCGGCATGAGGATCATGATCAGACAGCTGGCCCCGGGGATGGTACAGCAGATGCAATCCGTCTGCACTGACTGCAACGGAGAGGGGGAAGTGATTCATGAGAAGGATCGCTGTAAAGAGTGTGAGGGCCGTAAGGTGTGTAAAGAGGTGAAGGTCTTGGAGGTGCACGTCGATAAAGGAATGAGACACGGACAGAAGATCACATTCAGCGGAGAGGCGGACCAGTCGCCCAACACGGAGCCTGGAGACATTATACTGGTGCTGCAGGAGAAAGATCAtgagGAGTTCCGTCGTGATGGAAACGACCTGCACTTGTGCCACAGGATTGGCCTGGTGGAGGCTCTGTGTGGGTTTCAGTTCATGCTCACGCACCTCGACGGGCGACACCTCGTCATCAAATACCCCCCTGGCAAAGTCATAGAGCCCGGTTCTATAAGGGTCGTCCGAGGGGAAGGAATGCCTCAGTACAGAAACCCGTTTGAGAAAGGGGATCTGTACATCAAGTTCGAAGTTCAGTTTCCCGAGAACGGCTGGATCAGCACAGAGAAACTAACTGAGTTGGAGGATCTGTTGCCGTCACGTACAGAGGTTCCCGTCATCGCAGCTGATGCGGAGGAAGTTGATCTGCAGGACTTTGACATGAGTCAGGGATCGTCCGGTGGTCACCGCCGTGAGGCGTACAACGACAGCTCCGACGAGGAAGGTGGTCCGCATGGTCCGGGGGTGCAGTGCGCCCACCAATAGTCCCAGAATTCTTTGCAAGTTCTTTTTGGGGGAAGTATTAAAATTCCCATTTTGTCGGACAGATTCAATCCCCACCTCCACGTTCATCATATAGtgaaccaaacacacacacacacacacacacacacttgcagtACATATAGACATACACTTACACTTATTTACTGCAATCTTACCTACAAGTACACTCATTCACGCACTgttcaaaaagaaaagacaagcaTAACTAAAGGCAAAGcgaaataatttattcatcacCACTTCATTTCCATTGTAGTTCCACGTTCACAGTATATATGCTCTCTGAATATCTAAAACTCAGTGTCTGTGAGGAGACAGACTGTGTTGTTCAAGTTATAATTAACACGCACGCACAAATTTGTTAAAGACCGAGGCATTGTGGAGATTCCTGGAGTTCAATAAAATGTTCAGACGTGTTTCATTACATACTTGCCAGTTATTCAGGCACTGTCAGTCATCTCGTACTGGTTTATATTCGGCAGGACAGAATAGCATGCATGTGGGCGACACACTCTTAACTGAGATTAATAAGAAGCAAACCAAACCCAGAAGTGTTTTAATGTGCTTACTGTCTATGATAAAGGTATACGAGTCATGCAACTTCTTATTTGCCAAAGAAACACCGCAGTCTTCTTAAAAGATCAGCAGCCAGTGTGTGCATGCATCGTAAGCACTATTATACACCTGTAGGGGGCGGCATTCATCGTTGGCAATTAGGAAAGTGTTTGAACCGTGAATACAAGTTGCTGTCGTTCAAACACAATTACTTTTGTGCTCATACATCAATAAAGTGGATGAATGTTT

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09503 DNAJA2; DnaJ homolog subfamily A member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188698 lncRNA upstream 83436 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 140147 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 149500 20202748 ~ 20215231 (+) False G127766
TU188679 lncRNA upstream 153314 20202748 ~ 20211417 (+) True G127766
TU188509 lncRNA upstream 373095 19985741 ~ 19991636 (+) True G127663
TU188734 lncRNA downstream 2257 20373854 ~ 20375835 (+) True G127800
TU188810 lncRNA downstream 190486 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 214454 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 225610 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 268419 20640016 ~ 20641059 (+) False LOC122362661
XM_043265078.1 mRNA upstream 43531 20311779 ~ 20321200 (+) True lmf2a
XM_043264576.1 mRNA upstream 53598 20286465 ~ 20311133 (+) False c2cd5
XM_043264958.1 mRNA downstream 42419 20414016 ~ 20422329 (+) True LOC122363067
XM_043264111.1 mRNA downstream 68547 20440144 ~ 20445367 (+) True si:dkey-88e18.2
XM_043264827.1 mRNA downstream 99504 20471101 ~ 20504374 (+) False vwf
XM_043264825.1 mRNA downstream 99505 20471102 ~ 20504374 (+) True vwf
XM_043264826.1 mRNA downstream 99557 20471154 ~ 20504374 (+) False vwf
TU188630 other upstream 277150 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 350945 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1523196 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1582572 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1803121 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 176230 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 179551 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2029377 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2063209 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 3085503 23457100 ~ 23579802 (+) False cdh13

Expression Profile