RNA id: XM_043264963.1


Basic Information

Item Value
RNA id XM_043264963.1
length 2625
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC122363070
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22374588 ~ 22399236 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CcatatctctcttttttcattCAGGGTGAAAATGACCTATGGCGGAAGTTGAAGCGCAAACAAAGAGACTCTGAGTAAGCTGGACGGGGCCTGTCCCATAATCCCCGCTTGTCGGGTCAAGGGACCATGGGAGATGGAGGCGTCAATGCGGTGGGAGAAGGGGTGAATCAGTCCCACATGCTCTTTGACCGCTTCGTTCAGGCCACCACCTGCAAAGGCACTCTCAAGGCTTTTCAAGAGCTTTGTGACTTCCTGGAACTCAAGCCCAATGAATACCGTGTGTTCTACCACAAACTCAAGTCCAAGCTCAACTACTGGAAAGCCAAAGCTCTCTGGGCCAAGTTAGACAAGCGCGCCAGCcacaaagaatacaaaaaagGAAGGGCCTGTGCCAACACCAAATGTCTGATCATTGGAGCTGGACCATGTGGTTTGCGTACAGCCATAGAGCTGGGCTTCCTTGGAGCCAAGGTGGTTTTGTTGGAGAAGAGAGATGCATTCTCCCGAAACAACGTGCTCCATCTTTGGCCTTTCACCATTCAGGATCTGAGGGGTCTTGGAGCCAAGAAGTTCTACGGCAAGTTTTGTGCTGGAGCCATCGACCATATCAGTATTCGTCAGTTGCAGCTGATGCTTTTGAAGGTAGCTCTTCTTCTTGGCATAGAGATTCATGTTAACGTGGAGTTCAAAGGCCTCATTGAACCACCAGAAGACCAAGAGAATGAGAGAATTGGGTGGAGAGCCGAGGTCCACCCCAGAACACATCCAGTCAATGAGCTAGAGTTCGACGTCATAATTGGGGCTGATGGGAGGAGAAACACGCTGTCAGGGTTCAGGAGGAAGGAGTTTAGGGGCAAATTAGCTATTGCTATCACAGCTAACTTCATTAACCGCAACACGACTGCAGAAGCAAAGGTGGAGGAGATCAGTGGAGTAGCATTCATCTTCAACCAGAAGTTCTTCCAGGACCTTAGAGAAGCCACAGGAATTGACCTGGAAAACATTGTCTACTATAAGGATGACACGCACTACTTTGTAATGACTGCCAAAAAGCAGAGCCTGCTGGAGAAGGGCGTCATTCTACATGACTATGCCGACACTGAAATGCTGCTCTCCAGGGCTAATGTTGACCAAAAGGCACTGCTGTCCTATGCCAGAGAAGCAGCAGATTTCTCTACCAACCATCAGCTTCCTAAGCTGGACTTTGCCATCAACCATTACGGCCAACCTGATGTCGCCATGTTTGACTTCACCTGTATGTACGCCTCAGAGAACGCTGCGCTTGTCCGTCAGCGCAACGGCCATAAGCTGCTAGTAGCCCTGGTCGGGGACAGCCTTCTAGAGCCATTCTGGCCGATGGGTACTGGAATAGCAAGAGGCTTCTTGGCAGCCATGGATGCAGCGTGGATGGTGCGGTGTTGGGCTCATGGAAGCTCTCCTTTGGAGGTTCTGGCTGAGCGGGAAAGTATCTATCGACTGCTGCCTCAGACGACACCAGAGAATGTGAGCAAGAACTTTAGCCAGTACAGTGTGGACCCGACTACACGGTACCCCAACATCAGCCTTCACCAAGTGAGACCCAACCAGGTACGGCATCTGTTAGACACCGGAGAAACCAGGGATTTGCGTGTGGACATGGAGAATGTAGTCAACTCTTCGACTCCTAAACTCACAAGAAATGAGTCCATCGTGCGCTCCAGTAAGCTGCTGAACTGGTGTCAAAGGCAGACGGAGGGATACAGAGGTGTCAGCGTGTCTGATCTCACCATGTCCTGGAAGAGCGGCTTGGCCCTGTGTGCGCTCATCCACCGATACAGACCAGACCTCATTGATTTTGACTCACTGGATGAGAAAGACATGGAGAAGAACAACCAGTTGGGTTTTGACGTGGCTGAAAAAGAGTTTGGAATTTCTCCCATCATGACCGGGAAGGAGATGTCTGTTGTGGTGGAGCCTGACAAGCTCTCCATGGTGATGTACCTCAGCCAGTTCTACGAGATGTTCAAGGACACTGTGCCCCCTGGTGaaaacCACAATCTGAGCCCGGAGGAGAAGGCTGCGTTGATTGCCAGCACCAAATCACCCATCTCCTTCCTGAGTAAACTGGGTCAAAGCATCGCCATCTCCCGCAAACGAAACCCCAAGgataaaaaagaaaaagaactggATGGGCTGGGGAAAAGACGAAAGACCAGCCAGGCTGGACAATCAGAGGATGAAGAGCTGCAGAGGGTTAATCGAGACGACAGGCCTTCTATAGCTACAGCTCTGGCAGAACGTAAAATTGATTCGGCTGCGGctgcaaacaacaacaacaaagtgaAGTCGATGGCCACACAGCTGCTAGCAAAGTTTGAGGAGAACGCCCCGACACAGTCCACAGGACTCAAAAGACAGGGGGACTCCATGCCTGATCTGGGGCTCATATTGACCCCCTCTCCGGCAGCTCCCTCTCTGAAAGAGTCGGTGCGGCTGGCTCCAGTCCCTGCATGGAGGAAGAGACGCACTCAGTTACAGGAGCAGATGAGTTTCCGCTATAAAGAAAGACTGAAGTGTCAAACTCTCCCCATCAAACAGGAGCAGGTACTCAGCCTTAGAAGAGACGCGTAGCTTTTACTGTTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189419 lncRNA upstream 264131 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 305636 22033671 ~ 22068953 (+) True G128318
XR_006246944.1 lncRNA upstream 539568 21694446 ~ 21835021 (+) True LOC122323089
TU189310 lncRNA upstream 732960 21638410 ~ 21641629 (+) True G128251
TU189266 lncRNA upstream 906036 21466778 ~ 21468553 (+) True G128216
XR_006253188.1 lncRNA downstream 547 22387599 ~ 22388615 (+) True LOC122363071
TU189448 lncRNA downstream 22435 22409487 ~ 22411951 (+) False LOC122363143
TU189506 lncRNA downstream 147414 22534466 ~ 22535424 (+) True G128377
TU189508 lncRNA downstream 149723 22536775 ~ 22543533 (+) True G128379
XR_006253163.1 lncRNA downstream 151330 22538382 ~ 22539282 (+) False LOC122362809
XM_043264010.1 mRNA upstream 112620 22241472 ~ 22261969 (+) True LOC122362522
XM_043216571.1 mRNA upstream 348132 22016312 ~ 22026457 (+) True ttc38
XM_043216572.1 mRNA upstream 348132 22016376 ~ 22026457 (+) False ttc38
XM_043216627.1 mRNA upstream 359133 21954303 ~ 22015456 (+) True mical3a
XM_043265070.1 mRNA upstream 451916 21920216 ~ 21922673 (+) False lepa
XM_043265105.1 mRNA downstream 13892 22400944 ~ 22411957 (+) False LOC122363143
XM_043264327.1 mRNA downstream 29730 22416782 ~ 22421246 (+) True LOC122362770
XM_043264382.1 mRNA downstream 65394 22452446 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264380.1 mRNA downstream 65395 22452447 ~ 22467259 (+) True si:ch211-260p9.3
XM_043264381.1 mRNA downstream 65395 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XR_006246928.1 other upstream 1817962 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1825271 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2287008 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 2360803 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 3592430 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 13922 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 47754 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1070048 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1337584 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2062713 24449765 ~ 24457560 (+) True G128858

Expression Profile