RNA id: XM_043264985.1


Basic Information

Item Value
RNA id XM_043264985.1
length 1868
RNA type mRNA
GC content 0.54
exon number 15
gene id pepd
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18277364 ~ 18334482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCTCCCGGTCACGTGACTCGCTCTCTCAGccgagcagcagcagcagcagcaagcaGCATGGCATCTTCGAAGCAGAAGGCGGTGTATTGGCTGGGAAACGATACTCTGAGGGTCTCGGCCGCCCTGTTTGCAGAAAACCGAGAGCGTTTGTGTCGAGGCCTGAAAGCTGAGAAGGGGTTTCAGCCTGGATCTGTGGTGCTTCTTCAAGGAGGAGAACAGAAGCAGAGATACTGCACCGACACCGACATGCTCTTCAGACAGGAGTCGTTTTTCCACTGGACCTTCGGCGTGACGGAGGCCGACTGCTACGGCGCCATCGACGTCAACTCCAAGAAATCCATCCTGTTTGTTCCCAAGCTGCCGGAGAGCTACGCCACGTGGATGGGCGAGATATACTCTCGTGAACACTTCAAGGAGAAGTACGCCATCAATGAGGTGCATCACACCACCGACATTGCTGATGTGCTGACTAAAATGAAGCCCAGCGTCCTGCTCACACTGCGGGGAGTGAACACCGATAGCGGCAGCACCTGTCGTGAAGCGTCCTTTGAAGGCATCAGCCAGTTTCAGGTGAATAATTCCCTCCTGCACCCGGTGATCGTGGAGTGtCGTTTGCTGAAGACCGACATGGAGCTGGAAGTTCTGCGCTACACCAACCGCATTTCCAGCGAAGCCCACAAAGAGGTGATGAAACGCGTGAAGGCAGGCGTGAAAGAGTATGAGATGGAGAGtctgTTCCAGCATTACTGTTATGCTCGTGGAGGGATGCGACACACTTCATACACCTGCATCTGTGGAAGTGGGAATAACTCCTCCGTCCTGCATTACGGACACGCCGGGGCTCCCAATGACAAAACCATCCAGGATGGAGACATGTGTCTGTTTGACATGGGCGGTGAGTATTACTGTTATTCCTCCGACATCACCTGCTCTTTCCCGGCCAACGGCAAGTTCACCGCAGACCAGAAAGCCATTTATGAAGCCGTGCTGAAGTCCTCCAGAGCCGTGATGGCCGCCATTAAACCAGGTGTGAAGTGGACAGACATGCATCGTCTGGCCGACCGGGTTCACCTGGAGGAGCTGGTGAAGATGGGGATCCTGCAGGGGAGCGTGGAGGAGATGCTGAAGGTGCACCTGGGCGCTGTGTTCATGCCGCACGGTCTGGGTCACCTGCTGGGCATCGACGTCCACGACGTGGGAGGATATCCAGAGGGCATCGAGCGCGTCGACGAGCCGGGGCTGAAGAGTCTGAGGATGGGCCGTGTGGTGCAGGAGCGCATGGTCCTCACGGTGGAGCCGGGAATCTATTTCATCAACCACCTGCTGGATAAAGCTCTGGGCTCCCCGGAGCAGTGCAGCTTCATCAATAACCACGTCCTGACGCGCTTCCGAGGCTTCGGCGGGGTGCGTATCGAGGATGATATCGCCGTGACGGCTGACGGCGTGGAGCTGCTGACCTGTGTTCCTCGAACCGTGGAGGAAATCGAGGCCTTCATGGCAGATGAAACATCCAAAGCCTTCAGCGCCGTCAGCAGCCAGAAACTCTGAAGAGACGACCACGACCACGACGATGATGACGACACTCCTTTTCTTCACCATATCAGATTAACCCTGTATCCTAATAAAGGAATATCTTTGATTTTTGACTCTATGAAGGGAAAGCAATCACATGACAGCCGTCGTTTGATCGTAAGCCAGCAAATAAAAGTACAGGATCGTTTATGCTTCTCATGTAGCGGCCGAGTTCAGCTCTGAACTTTGTTTGGCCTGAATTGCTCATTCATTTGCGTTATATACCGTACGCTTTTTGCAAATTTGCTTTGTgcaatgcttatttttaataaaggtcTGATTTTTCTAGCATCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
K14213 PEPD; Xaa-Pro dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187939 lncRNA upstream 296023 17977675 ~ 17981341 (+) True G127268
TU187928 lncRNA upstream 302862 17972550 ~ 17974502 (+) True G127263
TU187874 lncRNA upstream 343545 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA upstream 343545 17929468 ~ 17933819 (+) False G127233
TU187898 lncRNA upstream 419215 17857012 ~ 17858149 (+) True G127243
TU188151 lncRNA downstream 17258 18351740 ~ 18352103 (+) True G127413
TU188170 lncRNA downstream 151375 18485857 ~ 18487271 (+) True G127431
TU188173 lncRNA downstream 157515 18491997 ~ 18518461 (+) True G127434
TU188180 lncRNA downstream 167959 18502441 ~ 18546723 (+) True G127439
TU188185 lncRNA downstream 192647 18527129 ~ 18528132 (+) True G127443
XM_043264208.1 mRNA upstream 206783 17983478 ~ 18070581 (+) True LOC122362666
XM_043264339.1 mRNA upstream 307903 17937030 ~ 17969461 (+) False LOC122362789
XM_043264342.1 mRNA upstream 307903 17937084 ~ 17969461 (+) False LOC122362789
XM_043264340.1 mRNA upstream 307903 17943052 ~ 17969461 (+) False LOC122362789
XM_043264341.1 mRNA upstream 307903 17945308 ~ 17969461 (+) True LOC122362789
XM_043264104.1 mRNA downstream 4661 18339143 ~ 18343857 (+) True ugt5f1
XM_043264106.1 mRNA downstream 4717 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA downstream 4718 18339200 ~ 18386930 (+) False LOC122362573
XM_043264105.1 mRNA downstream 14185 18348667 ~ 18386930 (+) False LOC122362573
XM_043264031.1 mRNA downstream 59121 18393603 ~ 18460809 (+) True hcn4
TU187968 other upstream 137111 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 349199 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 349199 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 390153 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 465197 17808674 ~ 17812167 (+) False G127239
TU188207 other downstream 225884 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 225884 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 443286 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 443286 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1668522 20003004 ~ 20013786 (+) False wdr59

Expression Profile