RNA id: XM_043265063.1


Basic Information

Item Value
RNA id XM_043265063.1
length 4554
RNA type mRNA
GC content 0.47
exon number 8
gene id bicd1a
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22817357 ~ 22849043 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCAAGAGACAGGATCAACTTCTGCCCACTTTGCATTCCGGATAGATGGCGCCGCTTTTCccccaaaacattttaagttgaaCGCGAAAGAAATGTCTCTGATGGGTGGAACGCTAGCGCGGTTTATCACAGCACTGTTTCCGACGAAGAAATCGAGTCTAGCTCAGATGCCGCTCGTGTAAACATCATTTAAGCATCGGCGAGCGTCAGCGCATCGGGCGGACTGCAGCATCCACCTGAATCTCCTCAGCCTCCGCCTCCCTGAGAGATTACTCCCGACCGGAGACCGGGGGCTATGGCTGCCGATGGAGGATGCGGGGAATCGGTGGAACATTACCGGGCCGAGGTGGAGAGGCTGACCCGAGAGCTCGCAGAGGCGAACCGGGAGAAGATCCGGGCTGCGGAATGCGGTCTGGTGGTGCTGGAGGAGAACCAGACGCTCAAGCAGCAGTACGCCGAGCTCGAGACCGAGCAGGAGGCTCTCAAACAGGAGCTGGAGCAGCTGCAGGAGGCATTTGGCCAGGCGTACACCAACCAGCGTAAAGTCGCCGAGGATGGCGAGACGAACGAAGAGACGCTGCTGCAAGAATCTGCCTCCAAAGAGGCCTATTACACGGGACGTCTGGTGGACCTTCAAAGCCAGCTCAACGTGAGCAGCTCAGTGGCCTCCAACGCCCAAGCAGAGGCCGAACGCCTCAACGCTCTTGTGCAGGAACTCAGAGAGAATAATGAGATGTTAGAGCTGCAGAGGAACAGGATGAGAGAGGAAATCCGAGAGTATAAGTTCAGAGAGACCAGACTGCTGCAGGACTACACTGAACTGGAGGAGGAGAACATCACCCTACAGAAACTAGTGTCAACACTCAAACAGAATcagGTGGAATATGAGGGTCTAAAGCATGAAATCAAAGTCCTTGAGGAAGAGACAGTGCTGCTCAACAGCCAGCTGGAAGACGCTTTGCGTTTGAAAGACATTTCTGAAGGCCAGTTAGAAGAGGCGCTGGATGCTCtgaagagtgagagagagcagaagaaCAATCTGAGAAAGGAGCTGGCCCATCAGCTCAGCCTGACGGACAGCGTGTACGGAGCCAGCACTCACCTGGCCATCTCTGCCGTAGAGGGTTTGAAGTTCGCAGAGGAGGCGGCGACCAATGGCACATCCGCGGCTGGGTCCAGTCCAAACAACGAGGACCGTAACCGCTGTAATGAGTGCAATGGGCATGGCCCAAAGGTTAATGGAGAATATCACAGACCGGGAGGCAGGAAGGGAGAGGTGCTTCACCCAGTGTCTGATCTCTTCAGCGAACTCAACCTGTCTGAGATACAGAAGCTCAAACAACAGCTCCTACAGGTTGAACGAGAGAAGGCGATTCTACTTTCCAACCTGCAGGAGTCTCAAACTCAACTGCAGCACACGCAGGGCGCTTTAACTGAGCAGCACAAACGCGTTCACCGCCTTACGGAGCGCTTCAATGCTATGAAGCGCCTCTACAGTGACAAGGAGTTTGACACCGAGGAGTCTGAGAAGAACGAAGTGCCCATTAACGGTTGCTGCGATTATGAGGCAGACATCAATGGAATGGAGCTTCTGGAGTGCAAATACAGAGTTGCCGTGACTGAGGTCATTGACTTGAAGGCGGAGCTCAAGGTATTGAAGGAAAAATACAACCAGTCTGTGGAgaaccaatcagaagagagcAACCACGGCGAAGGGAAGATCCAGGCTCTCGAAGAGCAGGTGAAACGGTTGGAGAAAGCCTGCCGTGAGGGCCGCGAGCGGGTTAGCAGCCTGGAGGTGGAGCTCCGGTGTGCTTCAGTTATGGCTAGCGAAAGTAACGGCATGCTGAACACAGCTCAGGACGAGCTGGTTACGTTTAGTGAGGAACTTGCTCAGCTTTACCACCACGTCTGCTTGTGCAACAACGAAACGCCGAACCGAGTCATGCTGGACTACTACCGTCAGAGCCGGGTTACGCGTAGCGGCAGTCTCAAAGGCCCTGAGGACCCCAGAGCACTGCTTTCTCCACGTTTAGCTCGCCGTATCGCTGCTGCTAACTCAGACGTGTCCAAAAGTCCTCAAGACTCTCCATCAAAGGAACCCCTTGGAGAAGGAACTAAAGGGGAAGGAGGAAGTCCCAACAAAACCCCCTTTGGTTCACCAATCAATGGTTCATCTCTCTCAACATCCACAGTTCCGGAAACAGGTGATCTCCGCAGGGAACCCATGAACATCTATAACCTCAACGCCATTATCCGTGACCAGATCAAGCACCTGCAGAAGGCTGTGGACCGCTCGCTGCAGCTCTCCAGGCAGAGGGCTGCGGCACGGGAGTTGGCACCCATCCTAGATAAGGACAAAGAAGTCTGCATGGAGGAGATCCTGAAACTCAAATCTCTCTTGAGCACCAAGAGAGAGCAGATCGCCACATTACGTCTAGTCCTGAAAGCCAATAAACAGACTGCCGAGGTGGCCCTTGCCAACCTGAAgagcaaatatgaaaatgagaaatgcatgGTGACGGAGACAATGATGAAGCTTAGAAATGAACTAAAGGCCCTCAAAGAAGACGCAGCCACCTTCTCCTCACTGAGGGCAATGTTTGCCACAAGATGTGATGAGTACGTAACTCAGCTGGATGAGATGCAGAGGCAGCTGGCTGCCGCAGAAGATGAAAAGAAGACTCTGAACTCCCTCTTGCGAATGGCCATTCAGCAGAAACTGGCCCTCACCCAGCGCCTCGAGGACCTAGAGTTCGACCACGAGCAGTCGCACTGTGGCCGTGGGGGGAAAGTGCCAAAAATTAAGAGCAGCCCTCAAAAATCCTAAAGTGTTGTTAGCTCTTCAAGAGGACCAGATGACTGCGGCCAACTCCAGACTTCCATGTGATCCTTTCAACTGTCTGGCCCATCATTCTCATCTTTTTGGCCCTTAGCCTCCTGTCGTTGGACTCTTAACAGTGACCAGTCCTCACAGAGACGGGGCACATCAGTCAATCACGAcctccagccaatcagacgcTCCTCTCTATACGAAGGACCCACCCTAATTTCCCGCCCGGTTACAGAAATTGgataaatgattcagtgatgcCTATTGTGAATGCACTAATTATCATTCTGAGTGAGATGAGAGCAAATAGAATTGGACTgatgtattcatatttattgatctatttattactttatttatttgtgttttgtttgtttatttttaaaatatgacgTGTGTTGtgtctgattattttaatacaaatatgatttttgataTGAATGCAGTTTTTCCTAAAAATTGCCACAAAATTAGTATTACATCAACCCAGGAGTAGTATTTTGGTGTAAGGTGACTTTCTAtcagtaaaaactaataatttggAAAAAAGTGTGACATGATAGAAAGCTGAAGAGGGGCAAATGGATTATTAAGAGACGTGTACAAATCATTTTCAATAAGTAGAAACAATTTTCAGCATAACATTTGAGTGACTTTGATTTTGACCTTCAAGCTCCCGAGGTGATGTTTGCGTTACACTGATGCTACGGTTGAGTTTTGCAAATCTCAGCTTCTCTAACGTCATTGCACGTGGAATTTGTttctttgtcctttttttaacagtttattgcAATGCAtaaagattatattttataccTGAATTCTCTTTTTTAATGCCGAAATGATGTCAGATAAGTCTGAGGACTGAGTGGACATGTAGTCCTAGTAGGGCAAAAAATCATGTTAGAGGGAGTAGATTTAGAGCTTGAGTGAGGCTTGATCCCAGCGCGCTGCTAAATTTGAACATGGGTTTGTTATTCTCAGATCTGCTCCAAAAACAGCACACAAGCCCTATTTACTGTACCCCACATGCACTACAGAATCTCTCgatttcattttaactttatatttaagtCATATCTGACCTTTGCCCCGTATAAAGCACAAACTTATTCATCTATGCATTTTGAAACAGGCACAGGATGGTTTTCATGTCATTAGGTCATCTGTCCTCCAATCGCGCCGTGATTTGTACCAGCAGGGCGAGGAGAAATATTAGATGCCGTTGTTTTTATACGGCAGcaaaccacaaaaacacattttctctttttctcagttTCACTGATTGACTGAAAGGTCGTTGATGGGTCTAGACGAAGAATCCATCAGACTCTTCTCAATGCATAACTGTATTCATTGTGGAAGCAGAACAAAGCTCAGTCTGTTTAATGACATGCAAAGAAGGATATAAGATCAATGGTTGCATTCACAATCTCTTTAAGGTCCCAGTTCTCAGtttctgttcagtttaaccCATTCATTTGGCATTTTTTGACTATATTCATTTCTTATTGAGTATTTTCAATGAGACATGAgcagtttcagttttattaactACACATTGTGGTATATTTGTTGCCTCTGAAGTGAAATTTACTAAACACCCACAACATCACATGGTGTGTACTGGTGAAAGCATGATCTTGCCGCAggatatttttatgtgtataacAGTCATAAGCCACAtacttttttgtgaaataaaagttaaaaaaaggtt

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253164.1 lncRNA upstream 254153 22560391 ~ 22563204 (+) True LOC122362810
TU189515 lncRNA upstream 265743 22550445 ~ 22551614 (+) True G128385
TU189508 lncRNA upstream 273824 22536775 ~ 22543533 (+) True G128379
TU189576 lncRNA downstream 92539 22941582 ~ 22944126 (+) True G128431
TU189596 lncRNA downstream 145055 22994098 ~ 22994341 (+) True G128451
TU189598 lncRNA downstream 146708 22995751 ~ 22996031 (+) True G128453
TU189600 lncRNA downstream 148721 22997764 ~ 23001633 (+) True G128454
TU189604 lncRNA downstream 153392 23002435 ~ 23002655 (+) True G128458
XM_043216753.1 mRNA upstream 54815 22668197 ~ 22762542 (+) True tmtc2b
XM_043264819.1 mRNA upstream 180492 22623124 ~ 22636865 (+) True LOC122362983
XM_043264390.1 mRNA upstream 195169 22583917 ~ 22622188 (+) True LOC122362807
XM_043264389.1 mRNA upstream 293185 22498257 ~ 22524172 (+) True LOC122362804
XM_043264388.1 mRNA upstream 350098 22456090 ~ 22467259 (+) False si:ch211-260p9.3
XM_043263892.1 mRNA downstream 883 22849926 ~ 22889500 (+) False fgd4a
XM_043263895.1 mRNA downstream 4896 22853939 ~ 22889500 (+) True fgd4a
XM_043263894.1 mRNA downstream 5461 22854504 ~ 22889500 (+) False fgd4a
XM_043263896.1 mRNA downstream 11584 22860627 ~ 22889500 (+) False fgd4a
XM_043263893.1 mRNA downstream 14415 22863458 ~ 22889500 (+) False fgd4a
TU189495 other upstream 378678 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 410375 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2260730 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2268039 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2729776 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 608057 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 875593 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1600722 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1734802 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 2146728 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile