RNA id: XM_043265069.1


Basic Information

Item Value
RNA id XM_043265069.1
length 1181
RNA type mRNA
GC content 0.44
exon number 4
gene id lepa
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21920107 ~ 21922673 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTTGTTCTGCATGGGGAGAATCGGGGTAGGAAAGGCTGAGGTGATTCACACATGAGTCAACAGCTATCAGCTATATAAGCCTGACCACTCATGGAGCCCGGGCATCACACAGACATCAGATTGCAAAGGTGTTGAAGACCGCTCAACGCAAGAAGCATGCATTTTCCAGCTCTTCACTTCTCCTGCATTTTGGGCGCGCTGAGTCTGGTGCACGCCATCCCCGTTCATCAGGACATCCTAATAAAAAACTTGGTCAAACTGCAGGCAGACACCATCGTCCTCAGAATCAAGGATCACAATGAGAAGCTGAAACTATCCCCAAAGCTCCTCATTGGCGATCCAGACCTTTACCCTGAAGTTCCTGCTGATAAACCTATCCAAGGTCTCGGGTCTATTGTGGACACCGTAACTACCTTCCAGAAGGTTCTTCAAAAGCTGCCCAAGGGGCATGTGAGCCAGATACGGAATGATTTGTCCACACTTCTGGGTTACCTAAAGGATAGAATGACATCTATGCGATGCACACTTAAGGAGCCAGCTAACGAGAGGTCGCTAGACGCTTTCTTGGAGGACAACGCCACCCACCACGTTACTTTTGGGAAGCTAAAAATCCCGCCGCGACGTCATGGCATGCCAAACAATCTGTCCTTACTACGTAAGATACGTACAATCCGATACCTGCACACATTGCCATGTCATGTTTCATGCCGTCTGCAGGATGATGTAAGCATTTGCTGAGCATGCTCGATGATGTCACTGTGTTTACCAGAAACGAGGTCAGACTCTGCTGGGAAGCTGGAATCATGTTCCCGTTTTACTTCTTGCTGCAACACCAGCATTGTACACTCTCAGGCAAAAAGATACAAAAGCGGTTACCGAGGCAGTACATTTTCGAAAGTAATATACATCATTAGTTCAGGTTCTGTACCTTTAAGGTTCTTATATGCACCCTTTAGTGGTAAATAAGGTATATCCGTACCATTTGAAAGTGTACTGCTTCAGTGATGGTttctgtacctttttttctgcaaGCATGGGAGGGGATAACTCATATTTTCCTACACAGTATATGAATCTATGCACTTTGAATATCCCGACTATTgttagttttgtattttgtgtattgATGCCATtgatcttttttaataaaatgttaccaataaAAGAAATTCTAAATTA

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246944.1 lncRNA upstream 85086 21694446 ~ 21835021 (+) True LOC122323089
TU189310 lncRNA upstream 278478 21638410 ~ 21641629 (+) True G128251
TU189266 lncRNA upstream 451554 21466778 ~ 21468553 (+) True G128216
TU189193 lncRNA upstream 754034 21165272 ~ 21166073 (+) True G128158
TU189192 lncRNA upstream 757356 21161886 ~ 21162751 (+) True G128157
TU189407 lncRNA downstream 110998 22033671 ~ 22068953 (+) True G128318
TU189419 lncRNA downstream 186800 22109473 ~ 22110458 (+) True G128329
XR_006253188.1 lncRNA downstream 464926 22387599 ~ 22388615 (+) True LOC122363071
TU189448 lncRNA downstream 486814 22409487 ~ 22411951 (+) False LOC122363143
TU189506 lncRNA downstream 611793 22534466 ~ 22535424 (+) True G128377
XM_043216790.1 mRNA upstream 238272 21656321 ~ 21681835 (+) True LOC122323126
XM_043265037.1 mRNA upstream 281785 21550145 ~ 21638322 (+) True LOC122363109
XM_043265038.1 mRNA upstream 281785 21550145 ~ 21638322 (+) False LOC122363109
XM_043264292.1 mRNA upstream 373973 21477328 ~ 21546134 (+) True pclob
XM_043263922.1 mRNA upstream 453514 21428727 ~ 21466593 (+) False sema3e
XM_043216627.1 mRNA downstream 31630 21954303 ~ 22015456 (+) True mical3a
XM_043216571.1 mRNA downstream 93639 22016312 ~ 22026457 (+) True ttc38
XM_043216572.1 mRNA downstream 93703 22016376 ~ 22026457 (+) False ttc38
XM_043264010.1 mRNA downstream 318799 22241472 ~ 22261969 (+) True LOC122362522
XM_043264964.1 mRNA downstream 451915 22374588 ~ 22399236 (+) True LOC122363070
XR_006246928.1 other upstream 1363480 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1370789 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 1832526 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 1906321 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 3137948 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 478301 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 512133 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1534427 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1801963 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2527092 24449765 ~ 24457560 (+) True G128858

Expression Profile