RNA id: XM_043265109.1


Basic Information

Item Value
RNA id XM_043265109.1
length 1378
RNA type mRNA
GC content 0.47
exon number 7
gene id odf3b
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20654532 ~ 20657823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAAAAGAGTCGCAGCAGCTGAGAGATTGATTAGAGCTCTTCGCGAgctacatttatacatttattttaccgTTCTATGTCAATAACGTCGTTTTCGTGCAGACATCGTAAGTGACGTCGTTTTAATTTATCCAAGTCATCATCAACGCGCTCGATACAATCCACGCGATAATATATTAAAGTGGCTTTGAACGagtatttctttcaaaaacagaacTTGTATTAAATTCACGAATTTGTAACATCTTGCTCTTAAGACATGTCGCCTGTGGAAGTATGGGCTGGCCCTTGGAAGCCCCACAGGCCAAGGGGCCCCATCGCTGCAATGTATAACAGTCCAGGGCCAACATATGCTCTGCCAGGGGCAactgGGATGAACAATCACGACCCGCGGATGCAGAAAGGCCCAGCGTTTAGCTTCGGCACACGTCACCGTAACTCACAGGCCAACTCGTCCCCCGGTCCTGGATACCTCGTTCCCTCCAACATCACCAGGGTGGGTCGGGATGGGACCCCTGCGTTCTCCGTCTACGGCCGACCAAAAGACATTCGGCCGTTTAAAACCCCAGGCCCAGgCAGTTACTCTCCAGAAAACGCGACAAAAACCACCTTTTACTCTGCCCCTGCGTTCTCTCTGTCTGCGAGGACTAAATTGTTCCGTAACGATCAAACACCAGGTCCAGCGGCATACATGCTTCCCCCGGTGTTAGGGTCGGGAGTTGTGAATAAAGCATCTGCCCCAAACGTCTTCTTCGGCGGTCGTAGTGCAATCGGCAGCTTCCACGAAGATCTACGAAAGACTCCAGGCCCAGGGACCTATCAAGTGGTGGATTCTGGAGTGTACAAGAACAAGGCCCCTGAGTACAGCATGACCGGACGCAACTTCTCACCTGGAGACACTACAAAGAAACCAGGACCTGGAGCCCACCATCCAGAGAGGGTTACTTTCACAGGAACCAAAGCTCCCAGCTTTTCCTTTGGAATTCGCCATTCTGAGTACACCGCTCCTTTAATTGTGGATGGGGCTGATTAAACAGGTCAATTCTGTTAAACAAGCTAGTCTGTCGTATCAGGTCTTAATATGGCCAAAATATACAACTTGAAATAATGGTGTTTCAGTGAAAAAGGGTCCCGGATGCAATAATTGTGCTGTTGCCACAATATAAGAAAAAGGTCCAAAACCAAGTCTACCTACTACCACTTTACCACATCACAGACTAAATCTATTAGTGCTGGGTCTGATTCATCCTTGTTAAATCCGAGTCAAGTCCAAATGCTTAGATGTTTGAGTTGGTGCTTGTTTATAATTGCAGTCTGAGTCCAAATTCCCCATCTCTACATGCAGAGGTTGTTTCACAAtatcaaatcaataaaaac

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188847 lncRNA upstream 6824 20641806 ~ 20647708 (+) False LOC122363025
XR_006253183.1 lncRNA upstream 6893 20641765 ~ 20647639 (+) True LOC122363025
TU188846 lncRNA upstream 10247 20641806 ~ 20644285 (+) False LOC122363025
TU188764 lncRNA upstream 13473 20640016 ~ 20641059 (+) False LOC122362661
TU188827 lncRNA upstream 54013 20597207 ~ 20600519 (+) False terb1
XR_006253167.1 lncRNA downstream 212052 20869875 ~ 20887115 (+) True LOC122362840
TU188900 lncRNA downstream 236954 20894777 ~ 20937442 (+) True G127935
TU189179 lncRNA downstream 422946 21080769 ~ 21081291 (+) True G128148
TU189180 lncRNA downstream 470730 21128553 ~ 21129033 (+) True G128149
TU189192 lncRNA downstream 504063 21161886 ~ 21162751 (+) True G128157
XM_043264894.1 mRNA upstream 862 20648300 ~ 20653670 (+) True zgc:77752
XM_043264202.1 mRNA upstream 13521 20634845 ~ 20641011 (+) True LOC122362661
XM_043264203.1 mRNA upstream 13521 20634845 ~ 20641011 (+) False LOC122362661
XM_043264204.1 mRNA upstream 20896 20629743 ~ 20633636 (+) True arf5
XM_043264178.1 mRNA upstream 36352 20609937 ~ 20618180 (+) True neto2b
XM_043263952.1 mRNA downstream 8930 20666753 ~ 20671837 (+) False rabl2
XM_043263951.1 mRNA downstream 9511 20667334 ~ 20671837 (+) True rabl2
XM_043263953.1 mRNA downstream 9521 20667344 ~ 20671837 (+) False rabl2
XM_043264880.1 mRNA downstream 270692 20928515 ~ 20933433 (+) True arsa
XM_043265030.1 mRNA downstream 305305 20963128 ~ 20969701 (+) True chkb
XR_006246928.1 other upstream 97905 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 105214 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 566951 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 640746 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 1872373 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 1743151 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1776983 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2799277 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 3066813 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 3791942 24449765 ~ 24457560 (+) True G128858

Expression Profile