RNA id: XR_006246944.1


Basic Information

Item Value
RNA id XR_006246944.1
length 234
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122323089
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21694446 ~ 21835021 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAGGAACGAAACGGAGCGCGCGGAGATGCACATCGTTCAGTTTTTTGCGGCTTTGTGGAGCTATTTAAAGTGCCGGGGAAACACAACTGACAGTACTGTATTTGACAATaaacATCTTCAATGGGGAAAAGTAACACGTGATGGATCACCGAACAGGTCATTTTAAGCGTCCTGTAGGTGTGGATTTTCGCTTGCCAGGACAACACCAACTCAAACTCCTCCACAGAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189310 lncRNA upstream 52817 21638410 ~ 21641629 (+) True G128251
TU189266 lncRNA upstream 225893 21466778 ~ 21468553 (+) True G128216
TU189193 lncRNA upstream 528373 21165272 ~ 21166073 (+) True G128158
TU189192 lncRNA upstream 531695 21161886 ~ 21162751 (+) True G128157
TU189180 lncRNA upstream 565413 21128553 ~ 21129033 (+) True G128149
TU189407 lncRNA downstream 198650 22033671 ~ 22068953 (+) True G128318
TU189419 lncRNA downstream 274452 22109473 ~ 22110458 (+) True G128329
XR_006253188.1 lncRNA downstream 552578 22387599 ~ 22388615 (+) True LOC122363071
TU189448 lncRNA downstream 574466 22409487 ~ 22411951 (+) False LOC122363143
TU189506 lncRNA downstream 699445 22534466 ~ 22535424 (+) True G128377
XM_043216790.1 mRNA upstream 12611 21656321 ~ 21681835 (+) True LOC122323126
XM_043265037.1 mRNA upstream 56124 21550145 ~ 21638322 (+) True LOC122363109
XM_043265038.1 mRNA upstream 56124 21550145 ~ 21638322 (+) False LOC122363109
XM_043264292.1 mRNA upstream 148312 21477328 ~ 21546134 (+) True pclob
XM_043263922.1 mRNA upstream 227853 21428727 ~ 21466593 (+) False sema3e
XM_043265069.1 mRNA downstream 85086 21920107 ~ 21922673 (+) True lepa
XM_043265071.1 mRNA downstream 85089 21920110 ~ 21922234 (+) False lepa
XM_043265070.1 mRNA downstream 85195 21920216 ~ 21922673 (+) False lepa
XM_043216627.1 mRNA downstream 119282 21954303 ~ 22015456 (+) True mical3a
XM_043216571.1 mRNA downstream 181291 22016312 ~ 22026457 (+) True ttc38
XR_006246928.1 other upstream 1137819 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1145128 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 1606865 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 1680660 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 2912287 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 565953 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 599785 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1622079 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1889615 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2614744 24449765 ~ 24457560 (+) True G128858

Expression Profile