RNA id: XR_006253142.1


Basic Information

Item Value
RNA id XR_006253142.1
length 1267
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC122362644
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25034118 ~ 25049605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGTGTTCAGGAAGTAATCGGAGACAGCATTCCTAATATTTAGGGTTGTTTTGGGGTTACTTGAACATTTTCCAAACTACACAACCATAAATGACCTCAGACTGACCACTAAtactaatgttttaatgttacaaattatTGTCAATTAATCAATGACATAACTTGTGAATGGCACCTCATCAAAAAAGGATGGCACGTGTTCTAAGCACAAAAGTCTGAATAGATTCGCTGATGTTACACATGATGGGATTCCAGTTATCTGTGTTTTTGCTTGTAGTTTAAACTTCCTGAGAACATAGAAGGACTGCACACACGCATGTATAATGTTTAAACAAGTGTTACACGTTCCCTGGAGCTACACCCGCTTCGTCAGGCGTTCAATCAAATATAGTGACATTGCATTATGTGTGCTGGATCTTGAAGGGAATTATTAACCCAAAAAAATCAAAgttagctaaaaaaataaatcaaattagcCAGCCTCGGGCCATTAAAGATCTGATCTGAACTGATTTGTAGAAATGtatcattacatcacttgctcacaaatggatccactgcagtgaatggacattctgacggcacccattcacttcagaggatgCATAGCGAGCCAGCGATTTAAGCTACATCTCTCCAAATctgatctgatgaagaaacaaactcatctacgtcTCGGATAaactgaggACCCCACAGAGAACACCTGAACATCCATCTGCAAAGGGGCCGCGCTGGACATGCCGCACGGTCCAGGGACAGCTTCATCAGAGCTTCTCACAGAACAGATGGAGAAGTTTGGAGAAGAAAACCTTTGCTCCAATCTGTTGCCCCTGTCAATCCAATACTGGGCTGATCAGATAATACAACAGGGCTGGATCTTTTCACTGTTTATTAGGGGCGACTGAGAGCGTGTTCTTAAGCCAAGTTTCATGGAAAACGCTGCCGCTCAGGGGCAAAGCATGAACAAAGAGTGAGAGAGGGCAGGTTAATTTGGAGATCAGTGAAAAGAGATGAACAGAGTGCGAGTCGGCTGGTGAGGAGGGGAGGAAGCACCTGCATGTGGGTGGCGATCGCTGCAGCTTCTGTGAAGAAGGGAGGAGGGAAGCAGCGAACAGCTGACGGGCTCAAGGTGAAGTTCAGAAAAAAGAAGTGCCCCTTCACCTGATATGAGTTTCCCACTGCCTATTTTTATTGAGACAACCCAGAAATAATTTCTCATACacattttcagtcatttataTTAGGCTTATGATAAATTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190626 lncRNA upstream 17134 25013750 ~ 25016984 (+) True G129125
TU190628 lncRNA upstream 33188 25000730 ~ 25000930 (+) True G129127
TU190615 lncRNA upstream 177887 24839062 ~ 24856231 (+) True G129115
XR_006253144.1 lncRNA upstream 297106 24735187 ~ 24737012 (+) True LOC122362654
TU190464 lncRNA upstream 305139 24664451 ~ 24728979 (+) True G129038
TU190642 lncRNA downstream 13849 25063454 ~ 25141859 (+) True G129135
TU190813 lncRNA downstream 238538 25288143 ~ 25288537 (+) True G129246
TU190829 lncRNA downstream 296800 25346405 ~ 25347280 (+) False mt2
TU190833 lncRNA downstream 299151 25348756 ~ 25349038 (+) True G129262
TU190852 lncRNA downstream 390443 25440048 ~ 25442441 (+) True G129270
XM_043264439.1 mRNA upstream 20498 25009287 ~ 25013620 (+) True rnf141
XM_043264440.1 mRNA upstream 20498 25009340 ~ 25013620 (+) False rnf141
XM_043264198.1 mRNA upstream 25654 25006079 ~ 25008464 (+) True lyve1b
XM_043264199.1 mRNA upstream 25654 25006079 ~ 25008464 (+) False lyve1b
XM_043264616.1 mRNA upstream 34848 24990583 ~ 24999270 (+) True eif4g2b
XM_043216926.1 mRNA downstream 40590 25090195 ~ 25095673 (+) True c18h11orf16
XM_043264256.1 mRNA downstream 49777 25099382 ~ 25103751 (+) True si:ch211-242e8.1
XM_043264257.1 mRNA downstream 49777 25099382 ~ 25103751 (+) False si:ch211-242e8.1
XM_043264158.1 mRNA downstream 57510 25107115 ~ 25108935 (+) True si:ch211-218c6.8
XM_043264159.1 mRNA downstream 57510 25107115 ~ 25108935 (+) False si:ch211-218c6.8
XR_006246977.1 other upstream 38168 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 446073 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 576558 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1297272 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1454316 23457100 ~ 23579802 (+) False cdh13
XR_006253170.1 other downstream 245138 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 245138 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 296800 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 847818 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 871662 25921267 ~ 26174156 (+) True G129424

Expression Profile