RNA id: XR_006253152.1


Basic Information

Item Value
RNA id XR_006253152.1
length 606
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC122362700
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19330322 ~ 19348479 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCCCTCAGCTACTCTATCTTCCTCCATCTTCTTGATTCTCTCACAGTACACCTGTTTATTCTCTAACCATCTTCActctttttcccttttcctcGGGCTAAACTCAAACATCATTGcgagagaagaaaacaaacccGGCGTCTGACTGCTGCATGGTGCTCTCGAATTGGACTGGTGGTCTACAGCTGTCCTTTTTGTCATTTCGGTATGGAAATCAGCCCATGCAGCAAATGCAAACTTGGAACAAGTGACGTTAATCCACCTTGTGCCGTCATGACTGATACtaaccagccaatcagaaaaggCCTCTAGGTGGGGCTTTATGTTGCATGCGTCAGTGCATTGTGAAAGAATAAAGGTATCCTGTCGTCGACCCTGCCCACGCGCAGAGCTAGATTGCCCGCTGCAGGCAGAGCGCGGGAAGACAAGGCGCGGGAAGCGCGCGCGGTAGAATTCTCCTCAGCCGTCTTCGCTGCAGATAAAACCAAACTAAATTTATACAGAGGAAAAGTAAATAGACTTATTAGATTGTTTCGTTTGTGATTTCGCCGCGTTAAGCCGAGGAACCGCGGACTCGCATTTCAACGAACGAAGTGACATTTTC

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188406 lncRNA upstream 41776 19269663 ~ 19288546 (+) False LOC122323181
TU188269 lncRNA upstream 548618 18730690 ~ 18781704 (+) False G127500
TU188255 lncRNA upstream 637091 18690565 ~ 18693231 (+) True G127492
TU188242 lncRNA upstream 683486 18646556 ~ 18646836 (+) False LOC122323076
TU188216 lncRNA upstream 755968 18573819 ~ 18574354 (+) True G127460
XR_006246957.1 lncRNA downstream 104051 19452530 ~ 19480221 (+) True LOC122323165
XR_006246958.1 lncRNA downstream 139091 19487570 ~ 19568485 (+) True LOC122323166
TU188450 lncRNA downstream 227410 19575889 ~ 19576159 (+) True G127617
TU188463 lncRNA downstream 274534 19623013 ~ 19623282 (+) True G127630
TU188465 lncRNA downstream 277674 19626153 ~ 19626521 (+) True G127632
XM_043216868.1 mRNA upstream 41766 19269611 ~ 19288556 (+) True LOC122323181
XM_043216867.1 mRNA upstream 41766 19275350 ~ 19288556 (+) False LOC122323181
XM_043216730.1 mRNA upstream 671582 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA upstream 671582 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA upstream 671582 18654621 ~ 18658740 (+) False LOC122323077
XM_043216913.1 mRNA downstream 31556 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA downstream 34070 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA downstream 34459 19382938 ~ 19388663 (+) False slitrk3a
XM_043216816.1 mRNA downstream 55842 19404321 ~ 19451211 (+) True LOC122323148
XM_043264320.1 mRNA downstream 251533 19600012 ~ 19603818 (+) True LOC122362761
TU188266 other upstream 488787 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 548163 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 768712 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 768712 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1190069 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 654525 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 738216 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1199348 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 1202669 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 3052495 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile