RNA id: XR_006253188.1


Basic Information

Item Value
RNA id XR_006253188.1
length 199
lncRNA type intronic
GC content 0.46
exon number 2
gene id LOC122363071
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22387599 ~ 22388615 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGCAGCGGGACTGAGGTCTTGAGGAGCTGCCCTAAGAAAACCATTCTCCTTTCTTCTTCCTCACCCTCATCTTCTTCATTCTCTTCATCGTTTCTTCCACACACACAGCATAATGTTAACCAGTCAGAGATAAACAAGTGTAATGGTGCTGGTGATGAAGAGAATGAGATCCAGGACCCTTCAATCTATTACAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189419 lncRNA upstream 277141 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 318646 22033671 ~ 22068953 (+) True G128318
XR_006246944.1 lncRNA upstream 552578 21694446 ~ 21835021 (+) True LOC122323089
TU189310 lncRNA upstream 745970 21638410 ~ 21641629 (+) True G128251
TU189266 lncRNA upstream 919046 21466778 ~ 21468553 (+) True G128216
TU189448 lncRNA downstream 20872 22409487 ~ 22411951 (+) False LOC122363143
TU189506 lncRNA downstream 145851 22534466 ~ 22535424 (+) True G128377
TU189508 lncRNA downstream 148160 22536775 ~ 22543533 (+) True G128379
XR_006253163.1 lncRNA downstream 149767 22538382 ~ 22539282 (+) False LOC122362809
TU189509 lncRNA downstream 150414 22539029 ~ 22539895 (+) True LOC122362809
XM_043264962.1 mRNA upstream 547 22374588 ~ 22387052 (+) False LOC122363070
XM_043264963.1 mRNA upstream 547 22374589 ~ 22387052 (+) False LOC122363070
XM_043264010.1 mRNA upstream 125630 22241472 ~ 22261969 (+) True LOC122362522
XM_043216571.1 mRNA upstream 361142 22016312 ~ 22026457 (+) True ttc38
XM_043216572.1 mRNA upstream 361142 22016376 ~ 22026457 (+) False ttc38
XM_043265105.1 mRNA downstream 12329 22400944 ~ 22411957 (+) False LOC122363143
XM_043264327.1 mRNA downstream 28167 22416782 ~ 22421246 (+) True LOC122362770
XM_043264382.1 mRNA downstream 63831 22452446 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264380.1 mRNA downstream 63832 22452447 ~ 22467259 (+) True si:ch211-260p9.3
XM_043264381.1 mRNA downstream 63832 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XR_006246928.1 other upstream 1830972 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1838281 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2300018 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 2373813 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 3605440 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 12359 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 46191 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1068485 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1336021 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2061150 24449765 ~ 24457560 (+) True G128858